genome.fa.s10.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  110  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36964692--36964757	16	4.1	16	94	0	114	28	0	36	34	1.58
36964738--36964847	45	2.6	41	78	9	116	32	5	29	32	1.80
36964861--36965172	167	1.9	167	96	2	583	44	5	6	44	1.51
36965139--36965190	15	3.6	15	80	12	56	53	1	0	44	1.11
36975145--36975559	48	8.7	48	79	1	348	28	18	29	23	1.98
36975144--36975559	191	2.2	190	83	3	505	28	18	29	23	1.98
36975144--36975553	143	2.9	143	84	2	421	28	18	29	23	1.98
36985668--36985810	71	2.0	71	97	0	268	41	13	14	29	1.85
36987798--36987962	47	3.5	48	87	2	226	26	16	29	27	1.97
36989509--36989584	40	1.9	40	89	5	118	17	13	32	36	1.88
36990880--36990921	21	2.0	21	85	0	57	40	4	30	23	1.75
36991930--36992021	30	3.0	30	73	9	87	38	4	0	57	1.19
36991930--36991977	10	4.8	10	76	19	55	37	0	0	62	0.95
36992385--36992425	18	2.2	19	86	4	57	41	0	0	58	0.98
36992385--36992427	17	2.4	18	81	14	54	41	0	0	58	0.98
36996132--36996243	56	2.0	56	98	0	215	26	16	16	40	1.90
36999901--36999935	16	2.2	16	100	0	70	45	14	0	40	1.45
37000791--37000848	22	2.8	22	77	15	70	48	0	3	48	1.18
37000828--37000886	32	1.9	30	86	6	82	47	3	3	45	1.36
37008536--37008569	17	2.0	17	88	0	50	47	0	0	52	1.00
37011572--37011610	19	2.1	19	85	9	53	56	2	0	41	1.13
37011579--37011611	17	1.9	17	88	11	50	60	3	0	36	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37025423--37025449	14	1.9	14	100	0	54	0	14	0	85	0.61
37025420--37025449	5	6.2	5	92	7	53	0	16	0	83	0.65
37025882--37025923	21	2.0	21	100	0	84	33	9	23	33	1.87
37030192--37030249	23	2.4	25	82	8	75	20	22	17	39	1.92
37033704--37033807	48	2.1	48	82	8	122	26	17	27	27	1.98
37038863--37039652	69	11.6	69	72	6	277	33	22	20	23	1.97
37038858--37039232	137	2.7	137	79	4	373	32	23	21	22	1.98
37039352--37039715	69	5.3	69	75	5	256	33	21	20	24	1.97
37038863--37039645	138	5.7	136	73	6	487	33	22	20	23	1.97
37039301--37039714	205	2.0	207	81	2	494	33	22	20	23	1.97
37039733--37039924	58	3.3	56	82	3	204	32	21	9	35	1.86
37043850--37043947	25	3.8	25	90	5	151	25	20	23	30	1.98
37048303--37048329	2	13.5	2	100	0	54	51	48	0	0	1.00
37048912--37048973	31	2.1	29	85	11	81	24	25	12	37	1.91
37050001--37050056	29	1.9	29	88	0	85	32	16	26	25	1.96
37050650--37050851	101	2.0	101	98	0	386	39	23	15	22	1.92
37051581--37051697	34	3.3	34	64	25	87	16	22	8	52	1.70
37051549--37051695	74	2.0	74	97	0	276	17	22	10	49	1.76
37051551--37051667	36	3.2	36	66	17	96	17	23	9	48	1.76
37052245--37052431	55	3.4	55	94	2	315	20	19	31	28	1.97
37055358--37055386	15	1.9	15	100	0	58	65	6	20	6	1.40
37055356--37055401	15	2.9	15	83	9	56	58	8	26	6	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37055767--37055807	23	1.9	21	85	14	57	53	0	21	24	1.46
37056124--37056161	15	2.5	15	95	0	67	39	0	10	50	1.37
37056538--37056623	21	3.9	23	80	10	90	15	22	25	37	1.93
37056785--37056825	19	2.2	19	87	12	59	46	0	24	29	1.53
37056912--37056944	17	1.9	17	93	0	57	48	3	21	27	1.64
37059136--37059179	21	2.0	22	86	4	63	50	2	13	34	1.55
37059952--37060098	61	2.4	61	79	3	154	19	5	25	49	1.69
37060126--37060163	19	2.0	19	100	0	76	31	21	5	42	1.75
37064145--37064298	81	1.9	81	93	0	263	24	1	45	28	1.61
37064335--37064373	20	1.9	20	84	5	51	28	5	35	30	1.79
37072306--37072413	26	4.2	26	92	0	180	37	24	6	32	1.81
37074632--37074679	21	2.3	22	85	7	64	62	4	2	31	1.26
37076671--37076783	32	3.6	29	74	15	82	65	7	0	26	1.24
37077635--37077680	15	2.9	15	90	6	65	26	6	0	67	1.15
37077647--37077713	21	3.0	23	72	21	63	28	5	1	64	1.26
37079380--37079410	15	2.0	16	93	6	55	45	0	3	51	1.17
37089638--37089717	39	2.1	39	97	0	151	42	22	17	17	1.89
37091857--37091943	43	2.0	43	90	0	138	25	18	26	29	1.98
37098508--37098764	46	5.6	46	100	0	514	29	28	21	21	1.98
37099597--37099718	62	2.0	62	98	0	235	42	17	16	23	1.88
37106302--37106558	46	5.6	46	100	0	514	29	28	21	21	1.98
37111051--37111154	27	3.9	27	77	8	104	18	26	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37117538--37117563	13	2.0	13	100	0	52	38	15	7	38	1.76
37119465--37119510	22	2.1	22	91	0	74	39	19	34	6	1.78
37120905--37121191	137	2.1	137	94	0	493	33	24	18	24	1.97
37122979--37123060	26	3.2	26	92	0	146	35	24	7	32	1.83
37128924--37128976	3	17.3	3	79	11	54	32	0	1	66	1.03
37137566--37137640	38	2.0	38	86	5	107	30	18	26	24	1.98
37137693--37138001	40	7.8	40	88	0	440	24	20	28	26	1.99
37143989--37144052	32	2.0	32	100	0	128	46	9	9	34	1.68
37146773--37146809	5	7.4	5	100	0	74	40	0	18	40	1.51
37147224--37147249	12	2.2	12	100	0	52	46	15	0	38	1.46
37148571--37148610	21	2.0	20	85	5	53	10	2	15	72	1.21
37148816--37148984	45	3.8	45	88	3	234	25	28	15	30	1.96
37148817--37148984	89	1.9	89	88	2	257	25	28	15	30	1.96
37148954--37149374	78	5.4	78	88	2	623	25	24	17	32	1.97
37148954--37149374	156	2.7	156	92	1	693	25	24	17	32	1.97
37149204--37149326	40	3.1	40	63	21	96	26	22	18	31	1.97
37149607--37149861	134	1.9	134	91	0	420	27	23	18	30	1.98
37150003--37150528	84	6.3	84	88	4	778	24	22	22	30	1.99
37150003--37150528	250	2.1	248	88	4	770	24	22	22	30	1.99
37151479--37151533	12	4.5	11	78	17	56	0	14	0	85	0.60
37151479--37151531	23	2.2	24	90	3	81	0	15	0	84	0.61
37157167--37157224	22	2.6	22	81	7	64	41	17	5	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37158449--37158547	29	3.0	34	76	22	120	40	21	15	23	1.90
37160379--37160406	8	3.5	8	100	0	56	0	21	21	57	1.41
37161581--37161690	26	4.2	26	94	2	177	37	24	4	33	1.76
37169884--37170012	46	2.8	46	85	4	179	20	20	27	31	1.98
37174231--37174319	44	2.0	44	91	0	142	31	12	16	39	1.86
37178665--37179180	258	2.0	258	99	0	1023	33	24	15	26	1.95
37179164--37179424	125	2.1	126	94	0	461	24	21	15	38	1.92
37186730--37186770	21	2.0	21	85	0	55	31	19	46	2	1.63
37186739--37186823	21	4.0	21	73	14	86	27	20	50	2	1.60
37187070--37187135	30	2.2	30	83	2	78	18	7	18	56	1.64
37187208--37187368	43	3.7	43	90	0	250	29	29	19	21	1.98
37188108--37188154	22	2.1	22	92	4	76	0	21	2	76	0.89
37188116--37188155	9	4.3	9	87	12	55	0	20	0	80	0.72
37188179--37188218	3	13.3	3	100	0	80	32	0	0	67	0.91
37202112--37202203	48	1.9	48	84	4	123	23	14	28	33	1.94
37209974--37210122	60	2.5	60	82	7	160	28	22	19	29	1.98
37210115--37210160	20	2.3	20	82	14	60	28	28	17	26	1.98
37210127--37210170	19	2.2	20	84	4	54	34	25	18	22	1.96
37218047--37218159	52	2.2	52	98	1	217	44	14	14	27	1.83
37222630--37222792	42	3.9	41	78	9	134	28	16	25	28	1.97
37225183--37225367	79	2.3	80	81	7	207	26	27	21	24	1.99
37225183--37225367	40	4.7	40	81	7	216	26	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37226928--37227008	20	4.1	20	93	0	126	22	40	27	9	1.85
37226930--37227012	40	2.1	40	93	0	139	20	38	28	12	1.88
37227872--37228217	45	7.7	45	74	10	244	44	18	18	18	1.87
37227917--37228169	135	1.9	135	80	9	302	43	18	18	18	1.88
37230407--37230449	20	2.2	20	100	0	86	27	0	37	34	1.57
37237372--37237410	21	2.0	20	85	14	55	58	12	7	20	1.58
37237330--37237623	73	4.0	73	98	0	570	44	14	15	25	1.85
37237518--37237556	21	2.0	20	85	14	55	58	12	7	20	1.58
37242225--37242441	43	5.1	42	63	14	124	29	17	28	25	1.97
37242212--37242446	84	2.8	84	89	0	380	27	17	28	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172