genome.fa.s10.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  36  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11270638--11270678	22	1.9	21	85	14	57	63	2	9	24	1.37
11271441--11271486	10	4.6	10	84	10	51	67	2	6	23	1.25
11272656--11272680	3	8.3	3	100	0	50	32	0	0	68	0.90
11273030--11273078	18	2.8	18	75	25	52	61	2	0	36	1.08
11275102--11275161	26	2.4	25	75	22	63	26	11	3	58	1.49
11275266--11275306	16	2.4	17	88	8	57	41	0	2	56	1.13
11275275--11275352	16	4.6	16	74	16	59	33	2	2	61	1.23
11275220--11275333	17	6.2	18	69	19	67	33	2	2	61	1.24
11275271--11275353	36	2.4	34	80	9	98	34	3	2	59	1.28
11275275--11275333	10	6.3	9	74	18	50	33	1	3	61	1.23
11275275--11275333	3	19.0	3	74	19	50	33	1	3	61	1.23
11275491--11275538	25	1.9	25	86	0	69	22	0	4	72	1.01
11275597--11275700	52	2.0	53	98	1	201	41	13	0	45	1.43
11276119--11276152	16	2.1	17	88	5	52	23	11	8	55	1.63
11279844--11279960	3	40.7	3	76	6	100	59	2	3	34	1.27
11279852--11279911	16	3.7	15	78	8	57	61	1	3	33	1.22
11279975--11280046	21	3.2	21	74	12	72	58	9	8	23	1.57
11280374--11280405	2	17.0	2	87	12	50	53	0	0	46	1.00
11282090--11282409	44	7.3	44	70	11	235	21	23	20	35	1.96
11282034--11282463	88	4.9	87	86	4	571	21	22	21	35	1.96
11282034--11282464	175	2.5	174	89	4	643	21	22	21	35	1.96
11294413--11294573	3	54.3	3	69	9	89	59	1	7	31	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11294407--11294517	40	2.7	41	77	14	106	58	2	5	33	1.35
11294944--11294975	9	3.4	9	95	4	55	56	3	0	40	1.15
11297639--11297678	7	5.7	7	100	0	80	40	45	0	15	1.46
11299919--11299985	22	3.0	22	66	0	53	14	22	20	41	1.89
11304857--11304956	38	2.6	38	88	3	139	29	11	22	38	1.88
11305025--11305373	44	8.0	44	75	5	312	24	18	18	38	1.93
11305025--11305388	131	2.8	131	82	6	416	24	18	18	39	1.92
11305017--11305376	88	4.1	87	81	5	354	23	18	19	38	1.93
11316459--11316497	13	2.9	13	84	3	51	51	0	5	43	1.24
11320811--11320892	31	2.7	30	74	17	80	36	10	10	41	1.76
11321808--11321859	20	2.5	21	75	9	61	51	11	3	32	1.56
11323304--11323380	37	2.1	36	83	11	95	63	2	11	22	1.39
11324547--11324584	18	2.1	18	100	0	76	57	21	5	15	1.57
11328758--11328822	30	2.2	30	97	0	121	29	30	4	35	1.78
11330053--11330111	30	2.0	30	86	6	84	40	0	38	20	1.53
11330216--11330276	30	2.0	32	84	12	83	36	0	44	19	1.51
11334063--11334173	43	2.6	43	88	2	152	28	20	24	26	1.99
11334060--11334195	43	3.2	43	82	4	132	27	24	22	25	1.99
11334249--11334331	31	2.6	31	80	3	85	59	19	4	16	1.55
11334917--11334954	19	2.1	19	90	9	62	52	0	5	42	1.24
11342670--11342789	64	1.9	64	89	3	188	50	1	10	38	1.46
11346949--11347125	39	4.5	39	92	1	291	27	28	24	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11346951--11347288	39	8.6	39	90	3	287	26	26	21	24	1.99
11346941--11347288	117	3.0	117	80	6	350	27	26	21	24	1.99
11350298--11350333	17	2.2	17	95	5	65	72	5	0	22	1.05
11350647--11350797	65	2.3	64	78	5	151	37	35	1	24	1.67
11350707--11350837	22	6.1	21	69	7	93	36	38	2	22	1.67
11350685--11350827	64	2.2	65	82	5	173	37	37	2	22	1.69
11350712--11350835	7	17.3	7	72	8	79	37	39	2	20	1.66
11350996--11351033	16	2.6	14	91	8	58	47	31	0	21	1.51
11350911--11351048	41	3.3	41	67	22	101	43	30	2	23	1.66
11351259--11351312	14	3.8	14	73	11	56	24	3	24	48	1.67
11351257--11351311	28	1.9	29	88	3	85	25	3	23	47	1.68
11351835--11351975	41	3.4	42	83	7	191	29	23	17	29	1.97
11351968--11352217	130	1.9	130	89	1	385	24	22	23	29	1.99
11352204--11352283	40	2.0	40	85	0	106	35	23	16	25	1.95
11356620--11356648	5	5.8	5	100	0	58	17	0	0	82	0.66
11361308--11361363	29	1.9	29	96	0	103	25	28	26	19	1.99
11363265--11363341	39	2.0	39	100	0	154	31	28	15	24	1.96
11363663--11363756	48	2.0	48	85	8	129	39	27	13	19	1.89
11367603--11367630	12	2.3	12	100	0	56	42	25	7	25	1.80
11369705--11369778	31	2.4	31	75	4	78	28	25	9	36	1.87
11373584--11373626	22	2.0	22	85	0	59	18	16	13	51	1.77
11381476--11381521	22	2.1	22	95	0	83	28	4	17	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11381484--11381542	22	2.6	22	86	5	73	32	5	13	49	1.64
11381859--11381901	22	2.0	22	85	0	59	20	13	16	48	1.80
11383528--11384010	36	13.1	37	81	6	500	34	20	15	28	1.94
11383528--11384010	73	6.6	74	81	4	480	34	20	15	28	1.94
11383540--11384000	109	4.2	109	84	4	534	34	21	16	27	1.94
11385617--11385663	17	2.6	17	83	10	58	68	2	2	27	1.13
11385624--11385682	16	3.8	16	72	17	61	67	1	0	30	1.00
11385623--11385708	19	4.7	17	69	24	50	68	1	1	29	1.04
11385622--11385729	8	12.0	8	73	18	54	65	0	1	31	1.09
11385696--11385729	17	1.9	18	88	5	52	61	0	2	35	1.11
11386118--11386166	19	2.6	19	90	0	71	36	2	4	57	1.30
11386142--11386195	18	2.8	20	78	21	69	31	0	1	66	1.02
11386141--11386205	19	3.3	20	75	16	64	33	0	1	64	1.03
11386165--11386221	19	3.2	18	83	9	64	35	0	0	64	0.93
11386188--11386221	17	2.1	16	88	5	50	41	0	0	58	0.98
11386135--11386222	19	4.9	17	74	13	61	35	0	1	63	1.02
11389955--11390027	26	2.8	26	85	0	83	28	17	12	41	1.86
11396089--11396234	42	3.5	41	80	1	157	27	26	16	30	1.97
11396089--11396243	84	1.8	84	87	5	233	28	24	16	30	1.96
11410097--11410125	14	2.1	14	100	0	58	13	0	20	65	1.26
11429159--11429295	26	5.2	26	77	2	112	29	21	17	32	1.96
11433109--11433270	46	3.5	46	76	6	175	29	29	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11436264--11436645	48	8.0	48	75	5	297	28	17	28	25	1.98
11436274--11436591	144	2.2	142	80	6	329	29	17	28	24	1.97
11441450--11441479	14	2.1	14	100	0	60	43	13	0	43	1.43
11448423--11448453	16	1.9	16	93	0	53	45	3	9	41	1.53
11450458--11450495	3	13.0	3	94	5	69	68	0	31	0	0.90
11450929--11450969	23	1.9	22	85	14	59	41	7	29	21	1.80
11453465--11453512	25	1.9	25	83	8	62	58	4	10	27	1.49
11453704--11453764	30	2.0	30	100	0	122	16	9	9	63	1.50
11465983--11466038	21	2.7	21	85	0	85	28	8	33	28	1.87
11478893--11478936	21	2.1	21	91	0	70	20	29	20	29	1.98
11483323--11483363	15	2.8	15	92	3	66	58	12	4	24	1.53
11483363--11483423	28	2.1	29	84	6	79	55	4	9	29	1.53
11483687--11483739	26	2.0	27	88	3	81	49	1	9	39	1.46
11483831--11483975	34	4.4	34	68	13	104	61	3	6	28	1.38
11483692--11484337	269	2.4	269	94	3	1120	56	4	7	31	1.48
11484131--11484280	13	11.1	13	67	22	60	60	3	4	32	1.34
11484096--11484280	98	1.9	98	96	0	343	59	3	5	31	1.37
11484100--11484265	34	5.0	34	68	11	110	61	3	6	28	1.36
11484328--11484417	31	2.8	31	76	20	87	54	5	3	36	1.40
11484397--11484489	23	3.7	25	78	10	82	53	5	5	35	1.47
11484397--11484491	25	3.8	25	79	9	104	53	5	5	35	1.46
11490541--11490574	12	2.8	12	90	0	50	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11496922--11496964	21	2.0	21	82	8	52	67	11	0	20	1.22
11497051--11497158	15	7.2	15	67	12	78	44	7	22	25	1.79
11497045--11497168	30	4.1	30	93	1	203	43	6	24	25	1.78
11501744--11501851	15	7.2	15	69	12	87	44	7	22	25	1.79
11501737--11501851	30	3.8	30	97	0	194	45	6	22	25	1.77
11504642--11504832	61	3.1	61	99	0	373	51	6	6	35	1.54
11510565--11510597	16	2.1	16	94	0	57	24	0	30	45	1.53
11516666--11517227	295	1.9	294	80	6	645	29	14	19	36	1.91
11521290--11521353	32	2.0	32	100	0	128	53	12	3	31	1.54
11524467--11524493	6	4.5	6	100	0	54	85	0	0	14	0.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172