genome.fa.s10.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  112  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37547840--37547884	23	2.0	23	86	0	63	24	24	17	33	1.96
37549148--37549207	29	2.1	29	81	3	68	46	0	23	30	1.52
37551404--37552175	268	3.0	266	89	6	1125	38	19	11	31	1.86
37563522--37563568	24	2.0	24	86	0	67	44	4	36	14	1.65
37565828--37565883	28	2.1	25	83	9	67	42	16	3	37	1.65
37565838--37565896	28	2.1	28	100	0	118	49	20	3	27	1.65
37574925--37575097	91	1.9	91	83	4	224	27	20	13	38	1.91
37576791--37576888	38	2.6	38	80	0	106	35	15	16	32	1.90
37576793--37576906	38	3.0	38	77	2	104	32	15	16	35	1.91
37580834--37581091	126	2.0	128	93	3	450	28	6	10	54	1.59
37580975--37581015	11	3.2	13	76	16	50	31	2	0	65	1.05
37590133--37590265	62	2.1	62	88	0	194	27	23	24	24	2.00
37590259--37590363	42	2.5	41	76	6	102	22	22	35	19	1.96
37590669--37590708	16	2.5	16	95	0	71	7	30	27	35	1.84
37591881--37591959	37	2.1	37	90	0	122	25	31	18	24	1.98
37592082--37592992	49	18.7	49	97	1	1699	28	28	9	32	1.89
37592917--37592993	25	3.1	25	64	17	70	33	27	5	33	1.79
37595818--37596712	40	22.4	40	98	0	1686	26	29	22	20	1.99
37603819--37603956	40	3.5	40	90	3	199	23	28	23	23	1.99
37606691--37606721	16	1.9	16	100	0	62	35	19	19	25	1.95
37607862--37607908	17	2.7	17	81	15	60	10	10	4	74	1.20
37626234--37626366	47	3.2	40	76	16	126	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37634101--37634997	40	22.4	40	98	0	1704	22	20	27	29	1.98
37637138--37637256	43	2.8	41	81	12	150	30	26	12	31	1.93
37640343--37640519	27	6.5	26	81	6	176	27	16	27	28	1.97
37640344--37640499	82	1.9	81	86	3	224	26	16	28	28	1.97
37640340--37640519	82	2.2	81	82	3	218	27	16	27	28	1.97
37644345--37644472	64	2.0	64	100	0	256	28	17	25	29	1.97
37652066--37652327	40	6.6	40	91	1	420	27	26	22	23	2.00
37662245--37662301	27	2.1	27	86	0	78	24	22	22	29	1.99
37662361--37662680	27	11.9	27	74	8	186	32	10	18	39	1.84
37662370--37662656	80	3.5	81	74	11	194	31	8	18	41	1.81
37662477--37662672	107	1.8	108	83	7	265	30	8	21	39	1.83
37662339--37662672	54	6.2	54	75	3	242	32	9	19	38	1.84
37662670--37662745	27	2.8	26	86	5	98	34	23	14	27	1.94
37674209--37674242	17	2.0	17	94	0	59	20	11	8	58	1.59
37679475--37679513	20	2.0	20	84	0	51	23	28	28	20	1.99
37681408--37681468	30	2.1	29	96	3	113	24	16	22	36	1.94
37687118--37687143	9	2.9	9	100	0	52	46	0	0	53	1.00
37689074--37689111	19	2.0	19	89	0	58	34	23	7	34	1.84
37689923--37689971	3	16.3	3	100	0	98	65	0	0	34	0.93
37690114--37690476	40	9.3	39	69	11	188	30	19	20	29	1.97
37690135--37690497	193	1.9	192	84	2	487	31	20	19	28	1.97
37691036--37691096	14	4.3	14	70	4	50	13	0	31	55	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37691083--37691138	23	2.6	21	83	13	69	19	0	37	42	1.52
37691065--37691138	22	3.4	22	80	12	64	18	0	35	45	1.50
37691528--37691561	17	2.0	17	100	0	68	64	11	5	17	1.45
37696260--37696353	49	1.9	49	100	0	188	30	13	27	27	1.94
37697075--37697150	27	2.8	27	85	0	89	32	22	9	35	1.86
37697075--37697231	54	2.9	54	80	0	161	33	21	8	36	1.83
37697102--37697231	27	4.8	27	88	0	143	32	20	7	39	1.81
37697156--37697347	27	7.1	27	78	5	147	40	22	7	29	1.81
37697156--37697347	54	3.6	54	77	8	167	40	22	7	29	1.81
37697197--37697398	80	2.5	80	83	4	237	43	19	7	29	1.79
37697197--37697398	27	7.5	26	80	5	197	43	19	7	29	1.79
37697528--37697592	27	2.4	27	79	5	69	35	16	26	21	1.95
37697951--37698066	59	2.0	59	96	3	216	37	13	22	25	1.91
37698460--37698554	25	3.9	24	83	5	111	27	24	23	25	2.00
37698460--37698566	25	4.4	23	82	5	97	28	22	23	25	1.99
37698772--37698848	31	2.5	31	93	0	127	28	18	24	28	1.98
37701278--37701409	27	4.9	27	91	0	183	29	20	8	41	1.81
37701332--37701689	27	13.2	27	75	10	133	39	20	7	32	1.80
37701278--37701472	54	3.6	54	83	1	158	34	21	7	36	1.82
37701265--37701449	81	2.3	81	75	0	190	34	20	8	37	1.82
37701386--37701688	81	3.7	78	74	8	216	42	21	7	29	1.79
37701427--37701607	54	3.4	53	83	5	213	42	22	7	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37701388--37701633	54	4.5	53	78	8	203	41	22	6	28	1.79
37701712--37701813	27	3.8	27	75	10	100	35	16	21	26	1.95
37701713--37701825	27	4.2	28	75	13	85	33	17	21	27	1.96
37702616--37702738	52	2.4	51	97	2	230	26	23	23	26	2.00
37702616--37702738	26	4.8	26	92	1	196	26	23	23	26	2.00
37702883--37702974	42	2.2	42	92	0	148	29	14	21	34	1.93
37702998--37703138	31	4.5	31	89	0	210	28	16	24	31	1.96
37705356--37705416	32	1.9	32	96	0	113	24	13	31	31	1.93
37705484--37705614	27	4.9	27	90	0	190	28	21	8	41	1.82
37705457--37705586	54	2.4	53	81	7	136	30	22	9	38	1.85
37705484--37705640	54	2.9	54	88	0	206	30	20	8	40	1.82
37705592--37705923	27	12.3	27	78	6	224	40	19	9	31	1.83
37705538--37705921	54	7.1	54	73	9	199	38	19	8	32	1.82
37705454--37705655	81	2.5	81	76	0	197	33	21	8	37	1.83
37705606--37705836	53	4.3	53	82	3	248	42	19	8	29	1.80
37705606--37705837	80	2.9	81	82	4	256	42	19	8	29	1.80
37706826--37706915	25	3.6	25	82	7	105	27	25	23	23	2.00
37706876--37706932	24	2.4	24	85	5	71	31	21	22	24	1.98
37707138--37707247	31	3.5	31	96	0	202	28	18	25	28	1.98
37709889--37710004	43	2.7	42	81	4	142	30	13	24	31	1.94
37723323--37723507	79	2.3	81	83	7	227	24	27	22	24	2.00
37723323--37723507	40	4.7	40	82	7	225	24	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37727909--37727958	25	2.0	25	100	0	100	28	12	12	48	1.76
37729652--37729773	43	2.9	42	78	7	138	29	12	25	32	1.92
37732376--37732414	20	2.0	20	94	0	69	28	10	41	20	1.85
37749984--37750215	116	2.0	116	93	1	394	39	20	21	18	1.93
37763209--37763443	40	5.9	40	92	0	389	26	28	21	22	1.99
37763563--37763648	43	2.0	43	97	0	163	40	23	5	30	1.78
37764975--37765111	46	3.0	46	89	0	202	27	30	8	33	1.87
37765128--37765199	22	3.1	22	64	24	58	23	29	13	33	1.93
37765093--37765275	47	3.9	47	91	1	251	26	28	9	34	1.88
37771201--37771259	23	2.6	23	76	15	59	74	3	18	3	1.10
37771797--37771826	9	3.3	9	100	0	60	80	10	0	10	0.92
37772935--37773060	64	2.0	63	90	1	198	31	18	13	36	1.89
37773268--37774163	175	5.1	177	79	7	869	30	18	23	27	1.98
37773268--37774164	352	2.5	352	80	7	910	30	18	23	27	1.98
37774169--37774574	175	2.3	175	81	10	457	31	16	23	27	1.96
37778663--37778785	62	2.0	62	95	0	219	26	18	30	24	1.98
37782958--37783023	16	4.5	15	71	21	59	21	19	1	57	1.49
37782943--37783028	43	2.0	43	93	0	145	24	19	1	54	1.51
37785941--37785992	15	3.4	15	75	19	54	63	0	0	36	0.95
37785943--37785991	16	3.1	16	72	21	50	65	0	0	34	0.93
37787730--37787801	19	3.6	19	73	15	65	54	2	6	36	1.42
37788158--37788189	13	2.5	13	100	0	64	37	6	15	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37788541--37788580	8	4.7	9	79	20	50	67	0	0	32	0.91
37788542--37788587	22	2.0	23	87	12	67	69	0	0	30	0.89
37788550--37788587	15	2.5	15	83	8	51	71	0	0	28	0.87
37795792--37795846	21	2.6	21	82	0	56	14	14	20	50	1.77
37797571--37797684	47	2.4	47	85	1	140	30	26	14	28	1.95
37797706--37798665	30	31.8	30	97	0	1742	29	29	14	26	1.95
37804107--37804161	24	2.4	23	82	11	60	43	0	0	56	0.99
37807866--37807916	25	2.0	25	88	0	75	41	5	15	37	1.72
37814367--37814498	67	2.0	65	86	2	183	37	14	19	28	1.91
37815563--37815838	91	3.0	91	85	3	349	32	8	11	47	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172