genome.fa.s10.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  45  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14460520--14460813	40	7.4	40	92	0	464	25	19	27	27	1.98
14460841--14461008	57	2.9	57	85	0	228	23	17	28	30	1.97
14460873--14460974	29	3.6	29	76	7	100	23	15	30	30	1.95
14460902--14461001	28	3.5	28	80	8	121	21	16	30	33	1.94
14462983--14463268	143	2.0	143	97	0	545	32	3	24	39	1.71
14463570--14463644	39	1.9	39	94	0	132	24	10	24	41	1.86
14465000--14465284	47	6.1	47	89	2	403	33	10	28	27	1.90
14465258--14465440	46	4.0	46	89	0	258	34	8	31	25	1.86
14467184--14467350	47	3.6	44	78	8	174	24	28	17	29	1.97
14469462--14469620	43	3.7	44	78	12	159	25	17	24	32	1.97
14470337--14470379	11	4.1	10	85	11	59	18	2	27	51	1.59
14472837--14473231	196	2.0	196	90	1	612	25	23	15	35	1.94
14477241--14477309	35	2.0	35	91	5	113	46	7	0	46	1.30
14477275--14477446	94	1.8	94	96	0	317	36	12	4	46	1.62
14494226--14494275	25	2.0	25	100	0	100	44	4	16	36	1.66
14494297--14494336	17	2.4	17	86	0	53	37	5	2	55	1.35
14495192--14495290	27	3.7	27	80	0	117	20	15	23	41	1.89
14495247--14495303	27	2.1	27	83	6	71	21	15	26	36	1.93
14495284--14495523	27	8.9	27	91	0	365	37	14	15	32	1.88
14497960--14498016	30	1.9	30	88	0	87	33	10	24	31	1.89
14498356--14498610	47	5.7	47	71	17	138	29	20	27	22	1.99
14498451--14498607	81	1.9	82	83	6	203	29	21	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14500350--14500573	63	3.6	63	83	2	245	20	27	26	26	1.99
14501235--14501286	23	2.3	22	83	3	59	73	0	19	7	1.07
14501246--14501286	21	1.9	22	90	5	66	70	0	21	7	1.11
14501279--14501358	40	2.0	40	95	0	142	55	3	15	26	1.57
14504602--14504699	27	3.5	27	87	4	115	26	15	27	30	1.96
14511022--14511100	20	4.0	20	77	0	77	13	24	26	35	1.93
14511109--14511157	26	1.9	25	87	4	71	14	18	26	40	1.89
14514082--14514262	40	4.6	40	79	11	171	26	20	27	25	1.99
14514133--14514295	79	2.1	79	80	9	181	27	20	26	25	1.99
14521145--14521225	34	2.4	33	81	2	99	28	23	25	22	1.99
14525900--14526028	47	2.7	47	82	10	156	27	20	30	22	1.98
14527303--14527555	103	2.4	104	90	3	393	30	28	20	20	1.97
14527895--14527959	30	2.2	29	81	8	76	30	27	6	35	1.81
14527902--14527959	30	1.9	30	85	0	80	31	24	6	37	1.82
14534853--14534906	27	2.0	28	92	3	92	27	29	25	16	1.97
14534820--14535084	103	2.6	104	90	3	408	29	29	21	19	1.97
14537188--14537230	18	2.5	16	82	14	50	39	2	9	48	1.48
14539571--14539937	181	2.0	182	90	1	576	32	26	15	25	1.96
14540801--14540868	33	2.1	33	97	0	127	26	7	17	48	1.73
14553031--14553056	12	2.2	12	100	0	52	38	7	7	46	1.61
14555778--14555812	17	2.1	18	89	10	56	34	17	0	48	1.47
14556279--14556307	14	2.1	14	100	0	58	0	13	0	86	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14559180--14559225	23	2.0	23	83	8	58	69	15	6	8	1.34
14567732--14567797	33	2.0	34	90	3	107	27	27	19	25	1.99
14571395--14571436	6	7.3	6	82	17	54	45	0	0	54	0.99
14571399--14571437	16	2.3	16	86	8	51	46	0	0	53	1.00
14572189--14572240	23	2.3	22	83	9	61	55	0	3	40	1.18
14581630--14581677	24	2.0	24	95	0	87	47	8	14	29	1.73
14581964--14582013	19	2.6	19	96	0	91	26	24	6	44	1.76
14582107--14582209	25	4.2	24	73	7	82	37	20	24	17	1.93
14582107--14582179	23	3.0	23	80	6	74	38	21	24	15	1.92
14584589--14584633	23	2.0	23	95	0	81	33	28	4	33	1.77
14589645--14589867	40	5.6	40	86	3	245	24	20	27	26	1.99
14589720--14589902	79	2.3	80	82	1	226	25	20	27	25	1.99
14591413--14591569	80	2.0	80	94	2	280	22	28	28	19	1.98
14597687--14597896	40	5.3	39	89	4	242	25	21	27	25	1.99
14597634--14597896	120	2.2	120	82	4	309	25	21	27	25	1.99
14597635--14597931	80	3.7	80	81	6	230	26	21	27	24	1.99
14603994--14604031	18	2.1	18	85	9	51	42	7	0	50	1.31
14631063--14631247	79	2.3	82	83	7	229	24	27	22	24	2.00
14631044--14631247	40	5.1	40	81	8	229	24	27	22	25	2.00
14639040--14639159	39	3.1	39	89	2	177	27	27	20	25	1.99
14639100--14639227	67	1.9	67	93	0	220	29	24	19	26	1.98
14639168--14639289	40	3.0	40	82	7	149	27	26	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14641812--14641949	69	2.0	69	97	0	258	25	17	28	28	1.97
14647302--14647471	40	4.3	40	85	0	207	24	30	21	23	1.99
14655228--14655395	40	4.2	40	82	8	148	27	27	20	24	1.99
14655265--14655395	40	3.3	40	89	2	201	28	27	20	23	1.99
14655228--14655448	80	2.8	80	79	11	229	27	27	20	24	1.99
14657101--14657130	14	2.1	15	93	6	53	13	10	13	63	1.52
14663552--14663779	49	4.6	49	82	3	267	30	27	16	25	1.97
14663552--14663779	101	2.3	98	84	2	285	30	27	16	25	1.97
14664011--14664065	28	2.0	28	82	3	67	38	12	5	43	1.66
14668313--14668378	33	2.0	33	88	5	98	30	25	4	39	1.76
14670582--14670658	38	2.0	39	89	2	120	33	23	9	33	1.86
14671073--14671117	21	2.2	19	78	17	54	31	11	15	42	1.82
14671081--14671122	21	2.0	21	100	0	84	28	9	14	47	1.75
14671333--14671376	22	1.9	24	86	9	65	38	15	2	43	1.60
14674235--14674269	18	2.0	18	94	5	63	11	31	45	11	1.76
14675847--14675954	45	2.5	45	77	8	109	25	17	27	29	1.97
14685247--14685346	33	3.0	33	92	0	173	24	12	33	31	1.91
14688940--14688972	16	2.1	16	100	0	66	45	24	12	18	1.83
14692729--14692896	85	2.0	87	83	7	218	22	15	25	36	1.94
14700359--14700485	42	3.0	42	78	4	130	22	18	28	30	1.97
14706987--14708193	603	2.0	602	88	3	1820	46	20	12	20	1.82
14710206--14710245	3	13.3	3	94	0	71	0	65	0	35	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14712952--14713025	38	1.9	38	100	0	148	29	22	29	17	1.97
14715677--14716238	48	11.6	47	79	7	495	24	28	19	27	1.99
14715677--14716238	144	3.9	144	87	6	690	24	28	19	27	1.99
14716158--14716251	48	2.0	48	91	0	152	31	31	13	22	1.93
14717801--14717836	14	2.6	14	86	0	54	75	0	2	22	0.94
14719685--14719726	10	4.0	11	90	9	70	33	9	19	38	1.84
14719685--14719726	21	2.0	21	100	0	84	33	9	19	38	1.84
14719733--14719758	11	2.4	11	100	0	52	50	26	7	15	1.71
14720107--14720155	25	2.0	25	87	0	71	30	16	28	24	1.96
14725068--14725201	38	3.4	38	79	8	128	46	12	7	33	1.70
14726821--14726929	25	4.4	25	79	0	119	28	22	23	25	1.99
14726802--14726913	50	2.3	51	79	4	131	29	22	22	25	1.99
14729768--14729972	48	4.2	48	82	7	232	26	28	18	26	1.98
14731535--14731570	14	2.6	14	86	0	54	75	0	2	22	0.94
14733419--14733460	10	4.0	11	90	9	70	33	9	19	38	1.84
14733419--14733460	21	2.0	21	100	0	84	33	9	19	38	1.84
14733467--14733492	11	2.4	11	100	0	52	50	26	7	15	1.71
14733841--14733889	25	2.0	25	87	0	71	30	16	28	24	1.96
14738802--14738935	38	3.4	38	79	8	128	46	12	7	33	1.70
14740555--14740663	25	4.4	25	79	0	119	28	22	23	25	1.99
14740536--14740647	50	2.3	51	79	4	131	29	22	22	25	1.99
14743519--14743690	46	3.7	45	78	11	188	21	20	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14743511--14743682	93	1.8	93	92	2	292	20	21	29	27	1.98
14759824--14759945	48	2.6	46	83	3	165	25	22	23	28	1.99
14768282--14768312	15	2.1	15	100	0	62	35	12	6	45	1.68
14774267--14774533	48	5.6	48	72	12	201	29	25	19	25	1.99
14774819--14775087	67	4.0	67	99	0	529	41	16	1	40	1.59
14776392--14776509	58	2.0	58	90	4	184	27	10	22	38	1.87
14778560--14778604	6	7.5	6	97	0	81	35	0	35	28	1.58
14781164--14781335	40	4.3	40	88	2	213	26	27	21	24	1.99
14781166--14781388	40	5.6	39	83	5	207	26	27	21	25	1.99
14781320--14781397	40	1.9	41	82	10	97	28	28	20	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172