genome.fa.s10.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  161  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52760598--52760723	63	2.0	63	96	0	234	62	6	9	21	1.47
52760604--52760749	63	2.3	63	85	4	170	63	8	9	19	1.50
52761518--52761586	35	2.0	35	100	0	138	20	11	50	17	1.76
52767150--52767216	24	2.8	24	76	14	61	47	4	0	47	1.22
52767247--52767395	5	30.0	5	68	22	57	31	3	1	63	1.19
52767218--52767328	42	2.6	42	75	17	102	29	4	0	65	1.12
52767244--52767337	37	2.4	38	82	7	118	30	2	0	67	1.03
52767301--52767387	7	12.1	7	70	17	54	32	4	2	60	1.29
52767559--52767652	18	5.1	18	71	14	68	28	2	1	68	1.08
52769640--52769683	21	2.0	23	86	8	65	61	2	0	36	1.09
52769991--52770018	3	9.3	3	100	0	56	64	0	0	35	0.94
52780948--52781017	2	35.0	2	100	0	140	50	0	50	0	1.00
52784384--52784457	2	37.0	2	100	0	148	0	0	50	50	1.00
52788063--52788144	26	3.2	26	85	0	110	19	20	21	37	1.94
52788043--52788141	52	1.9	52	87	8	148	21	21	19	38	1.94
52799116--52799222	43	2.5	42	82	11	128	33	24	13	28	1.93
52799713--52799772	28	2.1	28	81	6	66	30	21	3	45	1.68
52803114--52803289	50	3.5	50	89	0	253	34	15	24	25	1.95
52803265--52803382	31	3.8	31	94	2	202	27	19	27	25	1.99
52803400--52803523	47	2.7	46	83	5	151	28	16	25	29	1.96
52803494--52803608	42	2.7	43	89	4	171	30	14	26	27	1.95
52807212--52807297	35	2.5	34	76	12	84	60	2	1	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52829031--52829167	68	2.0	68	98	0	265	40	18	2	38	1.66
52829979--52830021	17	2.5	17	88	7	61	23	0	2	74	0.93
52830731--52830760	15	2.0	15	100	0	60	26	40	20	13	1.89
52833581--52833723	33	4.3	33	70	7	108	28	20	16	34	1.94
52836089--52836118	14	2.1	14	93	0	51	40	3	3	53	1.34
52839046--52839238	47	4.0	48	80	8	187	23	17	29	29	1.97
52844336--52844463	46	2.8	46	97	0	238	19	25	29	25	1.98
52846680--52846936	138	1.9	137	97	0	487	21	10	8	59	1.56
52851040--52851069	14	2.1	14	93	0	51	70	0	0	30	0.88
52861339--52861394	13	4.0	13	78	17	67	41	14	17	26	1.88
52863615--52863695	42	1.9	42	87	0	117	24	24	35	14	1.94
52864605--52864655	20	2.5	20	77	0	57	5	19	17	56	1.61
52864666--52864704	15	2.6	15	83	0	51	5	15	17	61	1.51
52866305--52866344	9	4.4	9	87	12	64	65	0	2	32	1.06
52866305--52866351	18	2.7	17	87	9	51	68	2	2	27	1.13
52866773--52866858	42	2.0	42	100	0	172	34	9	11	44	1.73
52876762--52876808	6	7.5	6	92	4	67	14	2	0	82	0.75
52876757--52876803	6	7.0	7	88	11	64	14	2	0	82	0.75
52876757--52876800	13	3.3	14	87	12	65	15	2	0	81	0.78
52880131--52880193	31	2.0	32	84	9	85	46	0	4	49	1.23
52881812--52881867	26	2.2	26	93	6	96	32	7	23	37	1.82
52892143--52892195	26	2.0	26	82	7	63	39	20	15	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52893336--52893370	12	2.9	12	91	0	52	17	20	17	45	1.85
52893348--52893458	45	2.5	45	89	0	177	19	17	18	44	1.87
52893438--52893468	6	5.2	6	100	0	62	16	16	16	51	1.77
52893698--52893835	54	2.5	55	76	9	140	36	13	13	36	1.84
52893648--52893834	18	10.4	18	74	11	123	35	11	14	37	1.83
52893884--52893923	18	2.2	18	86	0	53	35	17	12	35	1.88
52913485--52913637	76	2.0	76	98	0	297	35	22	20	20	1.96
52924053--52924086	15	2.3	15	89	0	50	61	2	2	32	1.26
52924036--52924105	24	2.8	25	73	16	65	67	2	2	27	1.19
52924251--52924284	3	11.3	3	93	0	59	64	0	2	32	1.08
52924407--52924588	3	60.3	3	70	17	76	62	4	7	25	1.40
52924533--52924588	16	3.5	15	78	9	58	60	0	7	32	1.24
52926545--52926636	3	30.3	3	68	22	50	63	2	5	29	1.29
52926544--52926597	26	2.0	27	82	10	67	64	3	5	25	1.32
52926593--52926704	12	9.4	11	68	23	50	58	3	3	33	1.32
52926591--52926660	18	3.9	17	77	18	63	61	1	4	32	1.24
52926719--52926757	3	13.0	3	84	10	53	61	0	2	35	1.10
52936227--52936256	14	2.1	14	93	0	51	40	16	13	30	1.87
52942773--52942806	15	2.3	15	89	0	50	61	2	2	32	1.26
52942756--52942825	24	2.8	25	73	16	65	67	2	2	27	1.19
52942905--52942944	4	10.8	4	84	10	50	75	2	0	22	0.93
52943124--52943295	3	57.3	3	68	17	56	62	5	7	25	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52943227--52943285	31	1.9	31	85	0	82	61	5	10	23	1.48
52944799--52944832	15	2.3	15	89	0	50	61	2	2	32	1.26
52944782--52944851	24	2.8	25	73	16	65	67	2	2	27	1.19
52944931--52944970	4	10.8	4	84	10	50	75	2	0	22	0.93
52945150--52945324	3	58.3	3	69	15	69	62	5	7	25	1.43
52945150--52945216	20	3.4	20	76	16	68	65	4	4	25	1.30
52945256--52945314	31	1.9	31	85	0	82	61	5	10	23	1.48
52946683--52946708	5	5.2	5	100	0	52	38	0	0	61	0.96
52946682--52946724	10	4.3	10	84	0	50	46	0	0	53	1.00
52946682--52946717	15	2.4	15	85	0	54	41	0	0	58	0.98
52947636--52947693	18	3.6	17	73	26	63	50	0	0	50	1.00
52953401--52953460	27	2.2	27	82	5	77	40	15	26	18	1.90
52953421--52953472	27	1.9	27	84	7	70	42	15	23	19	1.89
52954208--52954279	33	2.2	33	92	2	119	34	12	25	27	1.92
52955475--52955515	10	4.3	9	84	9	55	26	0	2	70	0.99
52955477--52955515	19	2.0	20	90	5	62	28	0	2	69	1.02
52956850--52957344	247	2.0	247	99	0	981	43	7	9	38	1.67
52963309--52963362	24	2.2	24	93	0	90	37	5	5	51	1.49
52963380--52963418	19	2.1	19	90	4	62	46	2	2	48	1.29
52967073--52967120	23	2.0	24	96	4	89	27	0	2	70	0.98
52967839--52967873	18	1.9	18	88	11	54	71	2	2	22	1.13
52970674--52970732	30	2.0	30	93	0	100	28	3	11	55	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52976212--52976250	20	1.9	21	84	5	53	43	20	10	25	1.83
52976560--52976594	18	1.9	18	88	0	52	57	11	20	11	1.64
52978125--52978173	17	2.9	17	78	0	53	6	2	16	75	1.09
52979225--52979258	16	2.1	16	100	0	68	41	0	11	47	1.40
52979425--52979482	5	10.6	5	80	12	53	50	0	18	31	1.48
52979491--52979568	38	2.0	40	82	10	97	62	0	10	26	1.27
52979577--52979646	33	2.1	32	84	10	88	64	1	7	27	1.28
52979797--52979838	22	1.9	22	85	0	57	23	7	0	69	1.13
52979865--52979903	17	2.2	18	86	4	53	15	15	2	66	1.36
52979972--52980023	18	2.8	18	82	11	61	23	15	1	59	1.46
52987155--52987206	25	2.1	25	100	0	104	28	11	25	34	1.91
52990637--52990670	13	2.6	14	86	13	54	44	5	17	32	1.73
53000271--53000344	29	2.6	29	91	0	112	66	0	1	32	1.00
53000286--53000338	17	3.4	17	70	24	53	66	0	1	32	1.03
53000271--53000340	13	4.8	16	75	16	71	65	0	1	32	1.01
53001194--53001223	15	1.9	16	93	6	53	43	13	0	43	1.43
53012303--53012345	17	2.5	17	92	3	68	76	9	9	4	1.14
53012302--53012346	18	2.5	18	85	10	65	77	8	8	4	1.10
53012302--53012352	17	2.9	17	80	8	59	78	7	7	5	1.09
53013024--53013067	17	2.5	17	92	3	70	13	9	2	75	1.14
53030882--53030926	23	2.0	23	81	0	54	62	2	2	33	1.20
53030939--53030971	17	1.9	17	88	11	50	69	3	3	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53034780--53034831	24	2.2	24	89	0	77	55	9	1	32	1.43
53035101--53035134	7	4.9	7	88	0	50	38	26	2	32	1.71
53039373--53039765	38	10.3	38	84	4	540	22	23	24	29	1.99
53039373--53039765	77	5.1	76	85	4	522	22	23	24	29	1.99
53039374--53039762	115	3.4	115	99	0	769	22	23	24	29	1.99
53040812--53040838	7	3.9	7	100	0	54	44	44	0	11	1.39
53040789--53040875	45	2.0	44	83	2	111	44	39	1	14	1.53
53041325--53041351	7	3.9	7	100	0	54	88	0	0	11	0.50
53041756--53041986	3	77.0	3	67	10	89	31	7	2	58	1.40
53042164--53042299	3	45.0	3	69	12	73	30	7	0	61	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172