Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  54  of  172  ( 20562 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17663778--17663830
23
2.4
22
76
20
56
9
18
1
69
1.25
17663806--17663876
18
3.9
18
70
24
51
9
26
1
61
1.35
17679075--17679099
13
1.9
13
100
0
50
36
16
32
16
1.90
17682079--17682141
33
1.9
33
84
12
85
12
26
6
53
1.62
17682139--17682194
21
2.7
21
72
5
51
8
17
1
71
1.21
17682138--17682194
14
4.1
14
75
16
57
8
17
1
71
1.19
17682156--17682276
18
6.4
18
68
9
80
8
19
2
70
1.24
17682156--17682263
6
17.7
6
67
9
58
7
18
2
71
1.22
17683334--17683372
12
3.0
13
88
7
53
23
2
5
69
1.21
17685082--17685146
20
3.3
19
73
16
51
38
16
21
23
1.93
17692896--17692956
10
6.1
10
74
12
54
32
13
24
29
1.93
17692897--17692957
20
3.0
20
83
9
79
32
13
26
27
1.93
17695046--17695085
13
3.0
14
83
16
50
12
20
0
67
1.22
17695943--17696003
9
6.9
9
69
3
52
6
11
1
80
0.97
17700905--17700962
10
5.7
10
76
11
64
31
27
12
29
1.92
17703396--17703472
28
2.8
28
80
5
84
31
28
10
29
1.90
17704893--17704936
23
2.0
21
86
8
61
50
18
4
27
1.66
17705867--17705954
37
2.4
37
79
12
101
9
20
5
64
1.42
17705922--17706007
18
4.6
18
74
8
73
5
22
2
69
1.21
17708097--17708143
20
2.3
20
85
0
67
29
36
12
21
1.91
17708135--17708553
209
2.0
209
99
0
820
32
10
10
46
1.73
17711084--17711127
22
2.0
22
95
0
79
34
4
36
25
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17712700--17712752
23
2.4
22
76
20
56
9
18
1
69
1.25
17717041--17717168
50
2.6
50
86
3
161
27
28
17
26
1.97
17719120--17719248
49
2.6
50
87
2
179
31
26
17
25
1.97
17719896--17719955
30
2.0
30
83
6
77
30
26
6
36
1.82
17721052--17721096
14
3.3
14
78
6
56
35
0
15
48
1.45
17722075--17722134
29
2.1
29
90
0
93
41
28
0
30
1.56
17722344--17722402
30
2.0
30
83
9
77
28
27
8
35
1.86
17724172--17724215
23
2.0
21
82
8
52
29
11
25
34
1.91
17725350--17725382
12
2.8
12
100
0
66
81
6
0
12
0.85
17726294--17726364
37
1.9
37
86
11
101
76
2
18
2
1.04
17726304--17726353
6
8.2
6
83
14
50
76
2
20
2
0.99
17726414--17726444
12
2.6
12
100
0
62
45
12
16
25
1.83
17734588--17734626
20
2.0
20
89
0
60
38
0
15
46
1.46
17736752--17736819
21
3.2
20
80
12
66
76
4
17
1
1.03
17736763--17736819
5
11.0
5
77
17
55
77
3
17
1
1.00
17736763--17736819
16
3.7
14
80
17
60
77
3
17
1
1.00
17736870--17736897
12
2.3
12
100
0
56
50
14
14
21
1.78
17736900--17736924
12
2.1
12
100
0
50
76
0
16
8
1.02
17736894--17736946
18
2.9
18
80
2
61
67
1
18
11
1.30
17736900--17736980
30
2.7
30
75
7
83
64
0
19
16
1.30
17737346--17737393
14
3.4
14
85
0
60
43
6
31
18
1.75
17741011--17741055
22
2.0
22
95
0
81
17
37
4
40
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17746553--17746609
10
5.6
10
83
4
69
45
21
22
10
1.82
17746554--17746609
21
2.8
20
83
5
76
46
21
21
10
1.81
17748579--17748624
18
2.5
19
75
13
51
58
6
0
34
1.24
17751266--17751375
45
2.4
45
89
0
157
23
21
25
29
1.99
17752460--17752489
12
2.6
11
90
10
51
10
16
0
73
1.09
17752483--17752560
24
3.4
24
76
16
69
5
17
1
75
1.05
17752508--17752583
29
2.7
28
77
16
84
6
18
0
75
1.02
17764980--17765040
30
2.0
30
83
0
77
31
22
8
37
1.84
17766261--17766301
20
2.0
21
85
4
57
41
21
26
9
1.84
17767622--17767685
29
2.2
28
86
8
92
53
12
12
21
1.71
17768189--17768364
46
3.8
45
81
10
212
21
21
29
28
1.98
17768185--17768356
93
1.8
93
94
0
308
20
21
30
27
1.98
17771304--17771372
15
4.6
15
83
0
84
11
17
13
57
1.64
17771295--17771382
30
3.0
30
81
8
99
10
17
15
56
1.66
17773772--17773944
46
3.8
45
76
11
172
21
21
28
28
1.98
17773768--17773939
93
1.8
93
90
2
274
20
21
30
27
1.98
17776785--17776828
16
2.9
16
80
19
58
6
11
0
81
0.86
17778894--17778993
11
8.6
11
83
9
128
22
6
9
63
1.46
17782629--17782692
30
2.1
30
85
5
85
21
18
18
40
1.91
17785979--17786105
12
10.6
12
70
13
55
68
2
18
10
1.29
17786005--17786108
18
5.6
18
76
5
91
70
2
18
8
1.26
17786001--17786108
6
17.7
6
70
6
74
70
2
18
8
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17786069--17786106
13
2.8
13
82
17
51
71
0
18
10
1.14
17786070--17786120
21
2.4
21
74
6
50
72
1
17
7
1.18
17786212--17786386
86
2.0
86
100
0
350
18
24
14
42
1.88
17790691--17790722
16
1.9
16
93
6
55
0
21
0
78
0.76
17800650--17800707
14
4.6
12
80
14
55
75
1
3
18
1.03
17800661--17800696
15
2.5
15
95
4
65
75
0
5
19
1.00
17800661--17800707
14
3.4
14
84
0
58
74
2
4
19
1.09
17800755--17800817
25
2.5
24
85
10
81
79
3
6
11
1.03
17800745--17800819
29
2.6
27
80
17
89
76
2
9
12
1.13
17801626--17801671
20
2.2
20
84
3
56
65
0
26
8
1.21
17801647--17801741
30
3.2
29
76
13
68
58
2
23
15
1.48
17814779--17814828
18
2.8
18
84
0
64
14
30
0
56
1.39
17814754--17814835
24
3.4
24
77
0
92
12
28
0
59
1.33
17817331--17817365
10
3.5
10
88
0
52
37
22
25
14
1.92
17817328--17817375
20
2.4
20
75
0
60
31
18
29
20
1.97
17828708--17828762
15
3.8
14
80
7
65
74
1
21
1
1.01
17839934--17839993
23
2.7
21
74
20
59
73
0
21
5
1.02
17848876--17849127
30
8.5
30
76
7
185
24
26
11
36
1.90
17848871--17849069
89
2.2
89
82
2
238
26
27
12
34
1.91
17848876--17849149
59
4.6
60
76
8
229
24
26
12
36
1.91
17848871--17849094
89
2.5
89
81
3
218
25
27
12
34
1.91
17848897--17849183
119
2.4
118
83
4
355
26
26
10
36
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17848904--17849131
60
3.8
59
80
6
239
25
27
10
36
1.89
17849266--17849304
12
3.6
12
74
25
50
46
7
5
41
1.55
17849266--17849307
20
2.1
20
100
0
84
45
9
4
40
1.58
17859118--17859226
55
2.0
55
98
0
209
35
24
9
30
1.87
17859339--17859659
144
2.2
144
84
4
398
24
28
19
27
1.98
17859292--17859669
48
7.9
47
76
9
293
24
28
19
27
1.99
17862830--17863014
40
4.7
40
81
6
189
24
27
22
25
2.00
17862858--17863014
79
2.0
80
83
6
203
24
28
22
24
2.00
17875415--17875526
43
2.6
42
83
5
145
29
16
25
28
1.97
17879854--17879887
11
2.8
12
86
13
52
26
0
0
73
0.83
17879861--17879888
11
2.5
11
100
0
56
25
0
0
75
0.81
17880011--17880071
29
2.1
30
93
3
106
59
13
3
24
1.49
17890363--17890407
22
2.0
22
91
0
72
48
15
2
33
1.57
17894137--17894181
22
2.0
22
91
0
72
48
15
2
33
1.57
17898717--17898773
28
2.0
28
89
3
87
63
3
10
22
1.42
17898519--17900493
300
6.8
284
75
10
1388
35
19
15
29
1.92
17904969--17905062
48
2.0
48
95
0
170
27
20
22
29
1.98
17912237--17913437
300
4.0
298
81
5
1252
34
20
15
28
1.94
17913812--17913836
12
2.1
12
100
0
50
76
0
24
0
0.80
17923182--17923403
68
3.3
68
88
7
260
22
30
15
31
1.94
17923246--17923403
68
2.3
68
96
0
289
24
31
13
31
1.94
17927055--17927230
46
3.8
46
77
14
182
21
19
30
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17927052--17927223
93
1.8
93
91
2
283
21
19
30
28
1.98
17929597--17929685
45
2.0
45
93
0
151
32
22
22
22
1.98
17933241--17933285
17
2.6
17
100
0
90
35
4
24
35
1.76
17934704--17934876
46
3.7
46
76
14
185
21
19
28
30
1.97
17934698--17934868
93
1.8
93
93
2
299
21
19
28
29
1.98
17937223--17937425
41
4.8
43
85
4
279
25
17
25
31
1.97
17937223--17937425
84
2.4
84
91
0
316
25
17
25
31
1.97
17937439--17937684
56
4.4
56
88
3
354
26
14
26
32
1.95
17939018--17939050
13
2.4
14
90
5
50
24
0
12
63
1.28
17940566--17940655
45
2.0
45
97
0
171
23
22
25
28
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172