genome.fa.s10.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  21  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6680866--6680921	28	2.0	28	82	6	69	55	0	3	41	1.17
6681168--6681257	20	4.4	21	73	12	62	34	1	3	61	1.20
6682728--6684063	84	16.0	83	83	4	1070	24	14	21	39	1.91
6682744--6684063	168	7.9	167	81	4	1194	24	14	20	39	1.91
6683793--6683945	77	2.0	76	84	7	202	22	13	24	39	1.90
6689922--6689972	23	2.2	22	80	16	59	56	1	0	41	1.10
6690351--6690384	17	1.9	18	88	5	52	50	2	0	47	1.16
6694506--6694568	26	2.3	26	75	5	63	34	4	0	60	1.18
6694579--6694615	19	1.9	19	89	10	58	29	2	2	64	1.21
6697492--6697575	42	2.0	42	100	0	168	21	19	14	45	1.85
6701314--6701466	38	4.1	38	81	0	164	16	24	27	31	1.97
6701446--6701491	22	2.1	22	91	0	74	15	28	28	28	1.96
6701536--6701624	25	3.5	25	85	1	124	19	21	25	33	1.97
6715695--6715818	27	4.6	27	92	2	185	27	13	28	30	1.94
6715695--6715818	55	2.3	54	90	1	185	27	13	28	30	1.94
6720734--6720869	48	2.8	50	82	4	168	22	19	24	33	1.97
6750233--6750553	105	3.1	105	99	0	633	38	13	21	27	1.91
6754231--6754267	19	1.9	19	89	10	58	24	0	0	75	0.80
6757976--6758019	13	3.5	12	81	9	52	70	0	0	29	0.88
6757976--6758019	7	6.9	7	78	19	51	70	0	0	29	0.88
6757976--6758019	19	2.3	19	96	0	79	70	0	0	29	0.88
6765985--6766062	12	6.2	12	81	14	86	0	41	3	55	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6765985--6766062	6	13.0	6	93	0	75	0	41	3	55	1.18
6765985--6766062	18	4.2	18	78	15	86	0	41	3	55	1.18
6776694--6776720	6	4.5	6	100	0	54	18	0	0	81	0.69
6777643--6777672	3	10.0	3	92	0	51	0	3	63	33	1.11
6778785--6778834	19	2.6	20	78	9	59	30	2	10	58	1.42
6778783--6778833	20	2.6	19	75	12	50	31	1	9	56	1.43
6780264--6780295	12	2.7	12	100	0	64	28	6	15	50	1.68
6781119--6781154	18	2.0	18	88	0	54	27	0	2	69	1.02
6781207--6781274	28	2.4	27	83	14	75	61	1	0	36	1.05
6781836--6781892	28	2.0	28	96	0	105	66	1	0	31	1.02
6782212--6782249	13	2.9	13	77	14	51	36	23	5	34	1.78
6782868--6782965	26	4.0	24	72	20	69	69	3	0	27	1.03
6782879--6782947	29	2.4	28	80	7	86	73	1	0	24	0.91
6795149--6795184	16	2.2	17	90	5	56	36	0	0	63	0.94
6798029--6798083	14	4.1	14	81	4	60	23	43	10	21	1.84
6798033--6798095	28	2.3	28	83	8	76	22	44	9	23	1.82
6801959--6802010	26	2.0	26	100	0	104	26	15	11	46	1.80
6809456--6809488	16	2.1	16	100	0	66	42	6	15	36	1.71
6812137--6812286	77	2.0	76	85	4	203	35	19	21	24	1.96
6813045--6813103	31	1.9	31	86	6	84	49	15	6	28	1.70
6813250--6813279	10	3.1	10	95	4	53	53	0	0	46	1.00
6817167--6817228	27	2.3	27	97	0	115	51	6	30	11	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6817605--6817659	29	1.9	29	82	10	69	29	18	9	43	1.80
6818390--6818426	2	18.5	2	100	0	74	0	48	0	51	1.00
6827513--6827556	21	2.2	20	84	11	56	13	15	9	61	1.56
6829444--6829599	25	6.3	25	75	3	120	37	16	23	22	1.93
6829469--6829634	73	2.3	74	87	3	237	36	15	24	23	1.94
6829719--6829769	26	2.0	26	88	0	75	35	21	23	19	1.96
6830711--6830743	16	2.1	16	88	11	50	15	15	0	69	1.19
6832097--6832215	34	3.5	34	79	3	114	31	9	13	45	1.75
6840195--6840260	15	4.3	15	73	17	55	43	1	1	53	1.19
6840279--6840315	16	2.3	16	86	13	58	40	2	0	56	1.13
6841913--6841937	13	1.9	13	100	0	50	84	0	0	16	0.63
6844198--6844233	6	6.0	6	96	0	54	33	5	16	44	1.71
6844892--6844924	7	4.7	7	100	0	66	42	15	30	12	1.83
6845130--6845199	34	2.1	34	97	0	131	40	11	18	30	1.86
6845201--6845243	6	7.2	6	100	0	86	51	32	0	16	1.45
6848561--6848621	21	2.8	21	77	5	68	26	21	22	29	1.99
6852863--6853206	168	2.0	168	95	0	616	24	22	27	25	2.00
6854154--6854208	11	5.1	11	84	4	67	56	29	12	1	1.47
6854154--6854217	22	3.0	22	86	4	85	59	28	10	1	1.40
6854154--6854216	11	5.9	10	83	5	63	58	28	11	1	1.41
6855083--6855133	26	2.0	26	96	0	93	33	9	25	31	1.88
6856619--6856671	26	2.0	26	82	7	63	37	20	15	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6860412--6860807	26	15.2	26	98	0	747	37	26	4	31	1.76
6865130--6865263	67	2.0	67	97	0	250	25	26	19	28	1.99
6883033--6883071	14	2.8	14	88	7	53	46	7	12	33	1.71
6883255--6883552	148	2.0	148	100	0	596	40	10	10	39	1.72
6886507--6886545	19	2.1	19	85	0	51	51	0	2	46	1.14
6886552--6886605	21	2.8	20	76	23	62	42	0	1	55	1.10
6889495--6889609	45	2.6	45	83	1	142	33	14	20	32	1.93
6889493--6889917	44	9.5	44	72	8	156	32	16	20	31	1.95
6889713--6889833	45	2.8	44	79	8	138	33	18	17	30	1.94
6889713--6889926	88	2.4	88	78	3	216	31	19	20	29	1.97
6891560--6891619	21	2.8	22	79	18	65	25	8	0	66	1.19
6894349--6894387	13	2.9	13	85	7	51	64	0	2	33	1.08
6904430--6904494	3	23.0	3	73	14	50	29	4	1	64	1.22
6911209--6911292	26	3.2	25	93	3	132	35	25	4	34	1.77
6912459--6912483	12	2.1	12	100	0	50	40	20	24	16	1.91
6913553--6913595	5	9.0	5	90	10	72	60	0	0	39	0.97
6914714--6914795	26	3.2	26	96	0	146	31	4	25	37	1.77
6917011--6917079	34	2.0	34	100	0	138	37	13	17	31	1.88
6917018--6917075	17	3.2	20	65	34	58	41	10	15	32	1.81
6919664--6919711	20	2.5	20	86	3	62	64	2	6	27	1.28
6921229--6921291	7	9.1	7	81	15	53	77	0	0	22	0.76
6921232--6921291	10	5.7	10	78	21	61	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6932408--6932469	27	2.3	26	76	13	63	48	11	3	37	1.55
6932853--6932984	47	2.8	48	87	2	185	35	27	14	22	1.93
6933985--6934060	40	1.9	40	84	10	102	28	19	21	30	1.97
6934682--6934737	21	2.6	22	80	5	60	17	0	39	42	1.50
6934727--6934786	29	2.1	29	81	6	68	18	1	33	46	1.59
6934909--6934984	29	2.7	29	81	2	82	19	1	28	50	1.56
6934943--6934990	22	2.2	21	77	3	51	22	0	31	45	1.53
6937143--6937214	25	2.9	25	82	0	90	13	40	16	29	1.87
6937900--6937944	23	2.0	23	90	0	72	42	2	11	44	1.52
6938650--6938912	9	29.6	9	77	6	205	46	15	1	36	1.55
6938660--6938849	17	11.8	17	68	19	104	47	13	2	36	1.55
6938632--6938926	80	3.8	81	81	10	316	46	14	1	36	1.54
6938659--6938898	71	3.4	71	86	2	356	46	15	1	36	1.55
6938811--6938912	26	3.8	26	80	3	105	47	15	0	36	1.53
6938665--6938919	142	1.8	142	93	2	424	46	15	1	36	1.55
6941106--6941189	26	3.2	26	96	0	150	36	25	4	33	1.77
6947193--6947240	25	2.0	24	83	4	60	18	4	4	72	1.17
6948188--6948650	131	3.6	131	87	1	648	26	17	20	35	1.94
6949490--6949521	13	2.4	14	94	5	57	37	0	9	53	1.34
6950166--6950244	31	2.5	33	81	8	99	12	6	17	63	1.49
6950180--6950249	31	2.3	31	87	0	104	15	7	18	58	1.59
6959083--6959148	29	2.3	29	83	0	78	24	12	22	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6961620--6961665	24	1.9	24	81	0	56	36	4	8	50	1.53
6965004--6965078	39	1.9	39	94	0	132	34	16	18	30	1.93
6965708--6965753	18	2.6	18	89	0	65	26	26	28	19	1.99
6967538--6967582	21	2.2	20	88	4	63	31	6	0	62	1.21
6967884--6967941	3	19.7	3	78	16	59	63	5	31	0	1.16
6968411--6968454	14	3.0	15	76	6	54	52	4	0	43	1.22
6968983--6969047	30	2.2	29	86	8	87	46	21	9	23	1.80
6969851--6969923	30	2.4	31	88	2	103	24	5	17	52	1.66
6972605--6972659	27	2.0	27	96	0	101	23	29	5	41	1.76
6975969--6975996	10	2.8	10	100	0	56	10	10	7	71	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172