genome.fa.s10.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  88  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29408780--29408849	28	2.5	28	88	9	99	31	27	14	27	1.95
29415383--29415512	66	1.9	67	83	10	165	33	15	30	20	1.94
29422881--29423010	66	1.9	67	84	10	174	33	16	30	20	1.94
29429562--29429829	46	5.7	47	76	9	228	22	29	20	27	1.99
29429559--29429830	94	2.9	95	80	9	319	23	28	20	27	1.99
29431252--29431366	43	2.7	43	77	11	128	34	26	14	23	1.94
29433295--29433340	23	2.0	23	84	12	60	45	10	6	36	1.65
29433302--29433346	23	2.0	23	82	8	56	40	13	8	37	1.76
29439479--29439524	23	2.0	23	84	12	60	45	10	6	36	1.65
29439486--29439530	23	2.0	23	82	8	56	40	13	8	37	1.76
29441208--29441395	40	4.7	40	92	3	317	25	27	22	24	2.00
29450390--29450474	40	2.2	39	85	8	118	24	27	22	25	2.00
29468420--29468544	48	2.7	46	84	7	148	28	17	29	24	1.97
29468462--29468588	48	2.6	48	81	7	141	29	18	29	23	1.97
29469786--29469825	21	2.0	20	95	5	71	10	35	30	25	1.88
29479977--29480074	51	1.9	51	83	4	126	28	27	16	27	1.97
29479990--29480123	51	2.6	51	83	2	144	27	26	19	26	1.99
29484572--29484628	25	2.3	25	96	0	105	50	22	7	19	1.71
29487419--29487443	13	1.9	13	100	0	50	32	16	16	36	1.90
29491999--29492058	27	2.3	26	85	2	75	35	21	21	21	1.96
29492020--29492083	33	2.0	33	87	3	94	35	21	23	18	1.95
29492802--29492934	27	4.9	27	86	1	178	27	20	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29499514--29499573	27	2.3	26	85	2	75	35	20	23	21	1.96
29499541--29499682	67	2.1	67	86	5	194	30	22	28	18	1.97
29499612--29499663	27	2.0	26	84	3	68	34	21	26	17	1.95
29500314--29500458	27	5.4	27	83	0	157	24	19	18	37	1.94
29500342--29500446	27	3.9	27	87	0	165	24	20	18	37	1.94
29500324--29500458	54	2.5	54	87	1	191	25	20	18	35	1.95
29502570--29502701	52	2.6	50	80	7	142	34	26	13	25	1.93
29526582--29526613	15	2.1	15	94	0	55	68	9	6	15	1.36
29528205--29528281	27	2.9	27	86	0	109	45	16	12	24	1.83
29533849--29534068	47	4.7	48	78	10	215	24	28	18	28	1.98
29533849--29534114	140	1.9	141	81	8	328	24	28	18	28	1.98
29543821--29543952	50	2.6	51	82	3	185	34	13	12	39	1.83
29545469--29545543	28	2.6	28	85	2	96	28	34	13	24	1.93
29545469--29545543	29	2.6	29	82	2	80	28	34	13	24	1.93
29549277--29549368	29	3.2	29	80	6	91	30	32	11	25	1.92
29579610--29579709	29	3.5	29	86	6	141	30	28	14	28	1.95
29581211--29581249	16	2.4	16	86	4	51	12	5	33	48	1.63
29582086--29582122	14	2.8	13	88	11	58	21	5	10	62	1.48
29585735--29585997	40	6.6	40	87	3	309	26	28	20	23	1.99
29593685--29593947	40	6.6	40	88	3	325	26	27	20	24	1.99
29599245--29599283	20	2.0	20	89	0	60	15	5	2	76	1.06
29614988--29615012	7	3.6	7	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29626912--29627044	51	2.7	49	83	4	176	26	26	21	25	2.00
29629073--29629117	15	3.0	15	75	12	56	62	13	8	15	1.54
29631444--29631633	49	3.8	49	80	2	209	31	23	17	27	1.97
29631449--29631645	100	2.0	101	87	2	288	31	23	17	26	1.97
29633870--29633894	11	2.3	11	100	0	50	8	16	16	60	1.58
29636421--29636510	46	2.0	46	90	0	144	22	20	27	30	1.98
29639719--29639837	22	5.1	22	63	25	66	24	28	13	33	1.93
29639681--29639866	47	4.0	47	96	0	327	26	28	10	34	1.90
29639688--29639887	94	2.2	91	83	8	235	30	26	9	33	1.88
29646994--29647063	34	2.1	34	84	7	90	31	24	21	22	1.98
29652517--29652639	28	4.4	28	85	0	165	30	29	14	25	1.95
29652648--29652729	40	2.0	40	80	0	92	36	25	13	24	1.92
29672012--29672193	29	6.3	29	91	3	271	29	11	25	33	1.91
29680127--29680254	28	4.5	28	88	2	175	28	12	25	32	1.92
29680127--29680254	57	2.2	57	88	2	186	28	12	25	32	1.92
29686494--29686522	13	2.2	13	100	0	58	55	13	0	31	1.39
29696672--29696706	16	2.2	16	90	10	54	77	0	0	22	0.78
29698403--29698627	40	5.6	40	85	2	290	23	27	24	25	2.00
29698367--29698627	80	3.3	80	83	3	312	23	26	24	25	2.00
29706391--29706506	40	2.9	41	81	3	146	25	28	22	24	1.99
29706836--29706960	38	3.3	38	100	0	250	31	26	14	28	1.95
29709659--29709704	21	2.2	21	96	0	83	17	23	34	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29712271--29712328	27	2.2	26	84	3	71	24	24	17	34	1.96
29720435--29720649	46	4.7	46	98	0	412	19	25	29	25	1.98
29737510--29737570	30	2.1	29	90	3	95	37	24	14	22	1.92
29743179--29743321	48	3.0	48	89	0	214	20	17	28	33	1.95
29760026--29760064	21	1.9	20	94	5	69	30	0	23	46	1.53
29760026--29760072	21	2.3	21	85	10	62	31	2	21	44	1.64
29762091--29762129	20	2.0	20	89	0	60	33	0	20	46	1.51
29762289--29762316	10	2.8	10	100	0	56	28	0	21	50	1.49
29764646--29764677	2	16.0	2	93	0	55	53	0	0	46	1.00
29766068--29766117	18	2.8	18	84	6	57	62	2	2	34	1.18
29766104--29766155	20	2.6	21	75	9	54	61	1	5	30	1.30
29766611--29766696	32	2.6	32	78	10	86	63	1	4	30	1.21
29772413--29772440	13	2.2	13	100	0	56	50	14	7	28	1.69
29772813--29773290	258	1.9	258	99	0	938	33	14	11	41	1.81
29774075--29774150	39	1.9	39	97	0	143	28	34	10	26	1.90
29775958--29776479	261	2.0	261	96	0	965	25	17	13	43	1.85
29781268--29781353	38	2.3	38	79	4	102	29	26	24	19	1.99
29783965--29784301	50	6.7	50	76	4	320	26	18	24	30	1.98
29784025--29784202	51	3.5	51	76	4	216	28	19	21	30	1.98
29783971--29784252	101	2.8	101	96	0	501	27	18	23	30	1.98
29784513--29784542	16	1.9	15	93	6	51	43	0	23	33	1.54
29786235--29786442	40	5.2	40	85	1	265	32	18	27	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29793626--29793673	24	2.0	24	95	0	87	29	31	0	39	1.57
29800036--29800143	42	2.5	42	79	5	128	34	24	14	26	1.94
29800026--29800138	43	2.6	42	79	6	120	32	25	15	25	1.96
29803719--29803841	43	2.9	43	83	2	149	22	14	28	34	1.94
29803719--29803881	86	1.9	84	80	6	184	26	14	26	33	1.94
29804259--29804436	27	6.6	27	84	3	205	29	28	15	26	1.96
29804280--29804435	82	1.9	81	88	3	233	29	28	15	26	1.96
29816012--29816103	39	2.3	39	88	5	132	25	28	22	23	2.00
29815993--29816156	40	4.1	40	78	10	167	24	26	23	25	2.00
29817323--29817498	56	3.1	56	98	0	334	22	21	10	45	1.82
29824893--29825037	40	3.6	40	85	4	193	25	24	26	23	2.00
29828003--29828220	46	4.7	46	95	1	366	28	28	21	21	1.98
29830364--29830422	26	2.1	29	84	9	79	33	33	22	10	1.87
29831780--29831826	11	4.4	11	78	5	51	34	19	17	29	1.94
29831947--29832078	48	2.8	48	89	0	192	19	18	30	31	1.96
29831949--29832105	48	3.3	48	83	5	158	19	18	29	32	1.96
29831904--29832127	96	2.3	97	78	6	222	20	18	29	32	1.96
29840762--29840797	17	2.1	17	89	0	54	72	0	2	25	0.98
29842205--29842269	24	2.7	24	72	9	60	36	3	32	27	1.72
29843600--29843795	54	3.6	54	78	6	166	40	18	8	31	1.81
29843600--29843824	27	8.4	27	76	6	138	40	19	8	31	1.82
29843614--29843798	80	2.3	82	79	4	180	40	18	8	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29843779--29843838	27	2.2	27	84	0	75	41	18	11	28	1.85
29845245--29845507	40	6.6	39	86	4	278	25	27	21	25	1.99
29845245--29845507	120	2.2	119	82	4	307	25	27	21	25	1.99
29845439--29845516	40	1.9	41	82	10	97	26	28	20	24	1.99
29853195--29853457	40	6.6	39	86	4	278	25	27	21	25	1.99
29853195--29853457	120	2.2	119	82	4	307	25	27	21	25	1.99
29853389--29853466	40	1.9	41	82	10	97	26	28	20	24	1.99
29855343--29855427	27	3.2	26	79	3	71	23	21	16	38	1.92
29855707--29855766	27	2.2	27	78	0	66	23	20	26	30	1.98
29866977--29867087	43	2.6	42	76	12	109	24	18	21	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172