genome.fa.s10.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  37  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11525317--11525364	18	2.6	18	80	9	53	18	4	0	77	0.93
11525331--11525372	20	2.0	20	86	4	57	23	2	0	73	0.94
11537476--11537517	22	2.0	21	86	9	59	9	16	0	73	1.08
11543779--11543823	11	3.9	11	80	11	54	35	0	0	64	0.94
11543774--11543829	24	2.3	24	87	3	76	37	0	1	60	1.07
11547613--11547643	16	1.9	16	93	0	53	25	19	6	48	1.72
11550013--11550097	30	2.8	30	96	0	152	36	0	42	21	1.53
11550146--11550179	9	3.8	9	88	0	50	29	11	14	44	1.81
11550519--11550548	15	1.9	16	93	6	53	56	3	0	40	1.16
11561509--11561597	45	2.0	46	84	2	117	39	4	22	33	1.74
11564799--11564911	25	4.5	25	68	10	86	26	14	27	31	1.94
11564846--11564906	26	2.4	25	80	2	68	26	16	27	29	1.97
11564803--11565014	76	2.8	76	83	0	244	26	14	25	33	1.94
11566749--11566774	12	2.2	12	100	0	52	73	0	0	26	0.84
11569044--11569119	23	3.3	23	77	0	80	17	18	18	46	1.85
11570174--11570377	102	2.0	102	97	0	381	31	10	15	42	1.80
11576958--11577105	33	4.5	33	87	1	190	41	33	6	17	1.76
11581128--11581420	76	3.9	76	82	2	347	28	14	24	32	1.95
11581128--11581240	25	4.5	25	68	10	68	30	16	23	29	1.97
11581304--11581362	26	2.3	26	80	8	68	25	10	25	38	1.87
11582408--11582440	13	2.6	13	90	4	50	21	15	39	24	1.91
11582955--11582992	14	2.7	14	88	8	51	36	5	18	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11582984--11583021	19	2.0	19	100	0	76	26	10	15	47	1.78
11583104--11583138	18	1.9	18	100	0	70	51	2	0	45	1.16
11583102--11583144	18	2.6	16	82	13	59	48	2	0	48	1.14
11583178--11583213	18	2.0	18	88	0	54	61	8	0	30	1.26
11589649--11589721	11	6.8	11	79	7	71	39	2	1	56	1.22
11598897--11598931	3	11.7	3	100	0	70	65	0	0	34	0.93
11602778--11602820	20	2.2	20	100	0	86	51	20	9	18	1.74
11605257--11605504	40	6.2	40	80	3	241	33	19	14	31	1.92
11605361--11605507	79	1.9	79	85	2	206	35	21	12	30	1.91
11605258--11605504	119	2.1	120	82	5	295	34	19	14	31	1.92
11609128--11609178	24	2.1	24	88	0	75	1	29	41	27	1.67
11609128--11609178	12	4.2	12	84	0	66	1	29	41	27	1.67
11624950--11624978	2	14.5	2	100	0	58	51	48	0	0	1.00
11627574--11627598	13	1.9	13	100	0	50	36	8	0	56	1.29
11628973--11629002	13	2.3	13	94	0	51	16	26	0	56	1.40
11634576--11634914	171	2.0	171	100	0	678	21	17	28	31	1.96
11635235--11635298	27	2.4	28	89	7	105	29	26	3	40	1.71
11635386--11635437	27	1.9	27	92	7	88	44	23	3	28	1.71
11635444--11635495	27	1.9	27	88	0	77	38	11	13	36	1.81
11636413--11636482	25	2.8	24	89	4	95	25	28	22	22	1.99
11636630--11636723	42	2.2	42	94	0	161	29	13	21	35	1.92
11638603--11638715	27	4.2	27	82	2	138	39	19	9	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11638603--11638726	54	2.3	54	84	0	158	40	20	9	29	1.84
11638508--11638716	116	1.8	115	78	4	233	37	19	8	34	1.82
11638735--11638791	27	2.1	27	83	6	71	38	12	12	36	1.80
11639720--11639789	25	2.8	25	86	4	88	24	25	25	24	2.00
11639937--11640028	42	2.2	42	92	0	148	29	14	21	34	1.93
11641864--11641907	22	2.0	22	100	0	88	36	13	22	27	1.92
11673257--11673364	26	4.2	26	95	2	191	31	7	24	37	1.83
11674981--11675093	27	4.2	27	85	3	129	16	23	23	36	1.94
11674979--11675093	54	2.1	54	88	3	169	16	23	23	36	1.94
11680341--11680448	26	4.2	26	93	0	189	32	7	24	36	1.83
11681935--11681987	26	2.0	26	85	7	72	37	22	15	24	1.92
11685139--11685189	25	2.0	25	100	0	102	35	25	15	23	1.94
11690880--11690909	14	2.1	14	93	0	51	16	0	36	46	1.47
11691922--11691956	18	1.9	18	94	0	61	51	5	0	42	1.25
11697577--11697637	26	2.3	26	86	5	79	40	14	18	26	1.89
11703897--11703967	37	1.9	37	85	5	99	38	1	2	57	1.22
11710832--11710864	11	2.9	11	95	4	57	30	0	0	69	0.88
11711077--11711124	11	4.4	11	78	0	51	60	8	10	20	1.55
11711078--11711120	22	2.0	22	90	0	68	58	9	11	20	1.61
11711085--11711125	11	3.7	11	80	0	55	56	9	14	19	1.66
11714632--11714709	40	2.0	40	89	0	120	17	14	34	33	1.90
11717462--11717502	20	2.0	22	85	9	59	36	9	0	53	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11717573--11717622	17	3.0	16	85	8	64	36	0	0	64	0.94
11717552--11717622	35	2.1	33	82	10	81	29	1	0	69	0.98
11717566--11717629	17	3.8	16	80	14	58	32	3	0	64	1.10
11717592--11717659	24	2.8	25	81	4	84	36	2	1	58	1.22
11717638--11717678	22	1.9	22	90	5	66	41	0	2	56	1.13
11717677--11717725	19	2.5	19	83	9	64	26	8	6	59	1.50
11720116--11720142	14	1.9	14	100	0	54	0	11	0	88	0.50
11721782--11721826	22	2.0	22	91	0	72	33	2	15	48	1.57
11732630--11732662	12	2.7	12	95	4	57	9	0	0	90	0.44
11737043--11737072	6	5.0	6	100	0	60	16	0	0	83	0.65
11739718--11739787	28	2.5	28	79	13	72	31	2	1	64	1.17
11739746--11739784	20	2.0	20	90	10	62	30	0	0	69	0.89
11739746--11739778	10	3.3	10	87	12	50	30	0	0	69	0.88
11746608--11746735	65	2.0	64	93	0	211	28	21	18	30	1.97
11752593--11752676	16	5.4	16	73	19	70	29	3	1	65	1.17
11752593--11752681	30	2.9	30	76	14	85	31	3	1	64	1.17
11752619--11752674	18	3.2	18	80	12	62	33	1	1	62	1.16
11752765--11752926	81	2.0	83	80	12	183	34	3	2	59	1.26
11759112--11759215	52	2.0	52	90	0	163	30	22	19	27	1.98
11763607--11763760	64	2.4	64	100	0	308	40	16	25	17	1.90
11764638--11764967	175	1.9	175	95	0	597	33	18	20	27	1.96
11768342--11768432	35	2.6	35	84	3	112	41	15	16	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11772146--11772230	39	2.2	40	86	2	118	50	8	7	34	1.59
11773052--11773097	20	2.4	19	82	10	58	65	2	0	32	1.05
11775659--11775718	22	2.7	22	84	0	75	28	25	8	38	1.84
11778947--11779441	69	7.2	69	76	3	206	21	21	24	33	1.97
11778907--11779397	138	3.5	137	77	4	423	20	21	24	33	1.97
11784908--11784958	23	2.2	23	82	6	59	23	15	13	47	1.82
11790843--11790907	20	3.3	19	72	20	53	60	1	3	35	1.22
11790893--11790986	39	2.4	39	76	3	100	57	3	5	34	1.37
11792928--11792996	31	2.2	32	85	14	92	24	15	10	49	1.76
11807422--11807464	22	2.0	22	86	9	61	30	11	4	53	1.57
11810279--11810461	79	2.3	81	84	7	232	25	27	22	24	2.00
11810258--11810461	40	5.1	40	82	8	238	25	27	22	24	2.00
11818823--11819175	47	7.4	47	95	1	589	29	29	7	32	1.86
11826123--11826230	25	4.3	25	78	11	114	28	14	21	35	1.93
11826123--11826230	50	2.2	50	93	0	180	28	14	21	35	1.93
11826123--11826248	50	2.5	50	88	0	171	28	12	21	37	1.90
11831659--11831814	43	3.7	42	72	8	111	26	25	21	26	1.99
11831659--11831817	85	1.9	85	82	5	205	27	25	20	26	1.99
11837768--11837793	5	5.2	5	100	0	52	0	19	0	80	0.71
11841335--11841396	30	2.1	30	100	0	124	25	16	22	35	1.94
11848306--11848366	18	3.4	18	86	0	86	39	19	9	31	1.84
11849441--11849564	36	3.3	36	68	16	117	36	20	4	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11849392--11849617	76	3.0	76	97	0	416	38	19	3	38	1.69
11855088--11855170	41	2.0	41	95	0	148	28	21	15	33	1.94
11857458--11857514	18	3.2	18	79	0	60	40	17	10	31	1.84
11858551--11858592	16	2.5	17	84	3	50	9	16	2	71	1.23
11858539--11858592	17	3.2	17	74	10	58	9	14	3	72	1.24
11862378--11862439	30	2.1	30	93	0	106	59	12	0	27	1.34
11862470--11862500	14	2.2	14	94	0	53	61	12	6	19	1.53
11862477--11862524	22	2.2	22	81	7	53	62	6	14	16	1.51
11864336--11864453	18	6.6	18	73	7	60	38	18	7	34	1.79
11864398--11864507	18	6.1	18	80	4	123	35	16	15	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172