genome.fa.s10.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  113  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37823490--37823546	28	2.0	28	100	0	114	38	14	19	28	1.90
37826710--37826765	22	2.6	21	85	5	67	39	5	1	53	1.34
37826733--37826791	23	2.5	23	78	13	57	33	5	1	59	1.29
37826885--37827169	149	2.0	146	81	12	340	30	5	4	58	1.42
37827244--37827407	9	18.3	9	67	15	72	28	6	3	61	1.37
37827244--37827407	6	27.5	6	68	15	72	28	6	3	61	1.37
37827367--37827407	15	2.7	15	88	0	64	31	4	0	63	1.15
37830293--37830372	11	7.4	11	67	2	54	65	10	7	17	1.46
37830293--37830373	22	3.7	22	80	3	74	64	9	8	17	1.48
37833164--37833194	5	6.2	5	100	0	62	80	0	0	19	0.71
37834535--37834576	16	2.5	17	84	7	50	64	0	7	28	1.20
37835212--37835241	3	10.0	3	100	0	60	66	0	0	33	0.92
37852160--37852369	40	5.3	39	89	4	242	25	21	27	25	1.99
37852107--37852369	120	2.2	120	82	4	309	25	21	27	25	1.99
37852108--37852404	80	3.7	80	81	6	230	26	21	27	24	1.99
37857616--37857697	42	2.0	40	85	2	101	28	17	9	43	1.80
37868201--37868225	5	5.0	5	100	0	50	40	0	0	60	0.97
37872378--37872741	49	7.7	49	70	11	188	24	28	18	28	1.98
37872378--37872557	98	1.8	97	85	3	254	24	30	18	26	1.98
37872571--37872744	48	3.7	45	76	15	156	23	27	19	29	1.98
37872571--37872744	94	1.8	95	84	6	237	23	27	19	29	1.98
37875749--37875797	18	2.7	18	96	0	89	42	8	18	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37886378--37886550	46	3.7	46	76	13	192	23	20	26	30	1.98
37886376--37886545	93	1.8	93	93	0	295	22	20	27	29	1.99
37908139--37908180	21	2.0	20	82	13	50	21	16	23	38	1.93
37912157--37912241	42	2.0	42	97	0	161	24	20	16	38	1.92
37916563--37916725	87	1.9	86	85	3	229	38	20	13	27	1.90
37917447--37917491	22	2.1	22	84	12	58	53	11	0	35	1.37
37918801--37918859	5	11.6	5	82	10	50	22	0	1	76	0.88
37918809--37918848	7	6.0	7	91	5	57	17	0	0	82	0.67
37918804--37918848	6	7.2	6	90	9	56	17	0	0	82	0.68
37918804--37918848	19	2.4	19	88	7	65	17	0	0	82	0.68
37921905--37921953	24	2.0	24	92	0	80	26	8	18	46	1.76
37926217--37926252	3	12.0	3	87	0	54	36	61	2	0	1.11
37929667--37929768	49	2.1	49	94	1	179	49	5	12	32	1.65
37933494--37933605	50	2.2	50	85	0	161	19	24	35	20	1.96
37944553--37944587	16	2.1	18	89	10	56	37	17	0	45	1.48
37954264--37954318	24	2.3	24	84	6	67	18	36	0	45	1.49
37954375--37954684	44	7.0	44	100	0	620	50	4	20	25	1.67
37954955--37954997	22	1.9	23	86	13	63	46	0	0	53	1.00
37955612--37955692	40	2.0	40	97	0	153	49	13	14	22	1.78
37955793--37955873	42	1.9	42	95	5	146	51	4	6	37	1.48
37959648--37959677	12	2.6	11	90	10	51	73	6	0	20	1.05
37962497--37962760	47	5.7	46	78	9	234	21	31	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37962401--37962756	47	7.5	47	72	13	216	21	30	21	26	1.98
37962439--37962756	94	3.4	93	82	6	376	21	30	21	27	1.98
37967403--37967464	31	2.0	31	100	0	124	48	22	9	19	1.78
37968682--37968897	39	5.5	39	86	3	274	26	25	18	29	1.98
37968682--37968895	117	1.8	117	87	2	322	27	25	18	28	1.98
37972008--37972094	44	2.0	44	95	0	156	48	22	12	16	1.80
37975734--37976147	49	8.7	49	74	10	288	23	28	20	27	1.99
37975734--37976147	94	4.4	93	78	5	386	23	28	20	27	1.99
37978173--37978225	18	3.4	18	62	37	50	32	0	18	49	1.48
37978167--37978224	28	2.1	28	100	0	116	32	0	22	44	1.53
37980453--37980494	16	2.5	18	77	14	54	47	4	2	45	1.36
37982418--37982514	47	2.1	47	98	0	185	27	16	16	39	1.90
37987304--37987397	41	2.3	41	83	0	116	17	22	28	31	1.96
37988583--37988628	23	2.0	23	91	0	74	32	19	8	39	1.82
37989480--37989566	3	30.3	3	69	17	60	32	1	2	64	1.13
37989472--37989566	40	2.4	39	78	16	97	33	1	2	63	1.13
38000046--38000123	33	2.3	33	84	2	111	47	12	11	28	1.76
38000111--38000315	108	1.9	108	90	2	331	51	13	8	27	1.69
38000087--38000324	55	4.4	55	84	5	297	49	13	9	27	1.73
38001113--38001153	18	2.2	19	86	4	57	56	0	0	43	0.99
38002609--38002661	18	2.8	18	86	11	63	64	0	1	33	1.05
38006120--38006167	18	2.7	17	81	9	51	45	4	0	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38007838--38007882	21	2.1	21	84	8	56	40	20	2	37	1.65
38010162--38010199	17	2.2	18	85	4	51	26	2	5	65	1.27
38011715--38011887	41	4.3	41	88	1	224	24	28	15	31	1.95
38011715--38011887	82	2.1	81	89	2	258	24	28	15	31	1.95
38017314--38017386	38	1.9	38	97	0	137	17	46	8	27	1.76
38019250--38019337	42	2.1	42	86	0	122	28	25	13	32	1.94
38026217--38026400	40	4.6	40	83	6	205	23	21	27	27	1.99
38026217--38026397	80	2.3	81	84	9	230	23	21	27	27	1.99
38027899--38028069	93	1.8	92	88	1	261	27	30	21	21	1.98
38027891--38028064	45	3.8	45	74	9	172	28	29	20	21	1.98
38028095--38028174	40	2.0	40	92	0	133	22	26	15	36	1.93
38030091--38030118	7	4.0	7	100	0	56	42	42	0	14	1.45
38030312--38030361	22	2.3	22	79	3	57	36	34	2	28	1.69
38030378--38030431	15	3.7	15	76	16	51	40	35	1	22	1.65
38030389--38030430	22	2.0	21	85	4	57	40	38	0	21	1.53
38030093--38030880	308	2.6	308	95	1	1403	45	20	2	30	1.64
38030620--38030669	22	2.3	22	79	3	57	36	34	2	28	1.69
38030686--38030739	15	3.7	15	76	16	51	40	35	1	22	1.65
38030697--38030738	22	2.0	21	85	4	57	40	38	0	21	1.53
38030937--38031001	23	2.8	24	77	15	57	24	0	26	49	1.51
38031043--38031201	40	3.9	41	84	5	173	19	22	22	35	1.96
38031728--38031783	13	4.5	13	78	13	73	35	0	14	50	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38031727--38031770	23	1.9	23	95	0	79	34	0	13	52	1.41
38032462--38032499	19	2.0	19	94	0	67	18	15	28	36	1.92
38038137--38038161	13	1.9	13	100	0	50	40	0	28	32	1.57
38067477--38067569	47	2.0	46	97	0	168	24	19	22	32	1.97
38072252--38072365	43	2.7	42	83	2	147	30	17	23	28	1.97
38077524--38077614	24	3.8	24	89	0	128	23	14	28	34	1.93
38080481--38080527	23	2.0	23	100	0	94	21	17	14	46	1.83
38085583--38085669	24	3.6	24	90	3	122	22	14	29	32	1.94
38093414--38093463	10	5.0	10	79	13	50	24	8	2	66	1.29
38093424--38093463	20	2.0	20	90	9	64	25	7	2	65	1.32
38097195--38097279	15	5.4	15	70	25	68	23	2	1	72	1.03
38097174--38097278	34	3.2	33	72	16	103	20	3	0	74	1.03
38097173--38097279	10	12.0	9	75	17	75	21	3	0	73	1.04
38097195--38097270	29	2.6	30	81	8	95	22	2	1	73	1.03
38098390--38098570	96	1.9	96	91	0	299	25	15	27	32	1.96
38099261--38099310	10	5.0	10	79	13	50	24	8	2	66	1.29
38099271--38099310	20	2.0	20	90	9	64	25	7	2	65	1.32
38111234--38111307	33	2.3	33	86	6	98	20	43	20	16	1.88
38113908--38113980	33	2.1	34	82	9	87	28	19	28	23	1.98
38119066--38119122	29	2.0	29	82	6	71	31	29	10	28	1.90
38124675--38124711	9	4.1	9	90	10	58	18	0	0	81	0.70
38124672--38124708	16	2.3	16	90	9	58	16	0	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38125438--38125486	18	2.7	18	90	3	71	42	14	22	20	1.88
38125438--38125490	6	8.7	6	80	2	61	43	13	22	20	1.86
38125471--38125580	45	2.4	45	89	3	168	42	19	17	20	1.89
38126970--38127024	20	2.7	20	81	16	67	56	1	1	40	1.21
38128458--38128512	28	2.0	28	88	0	83	27	16	14	41	1.87
38134614--38135623	48	21.0	47	88	3	1453	31	25	6	37	1.81
38134614--38135623	96	10.5	96	98	0	1914	31	25	6	37	1.81
38146083--38146197	13	8.8	13	64	28	50	57	3	2	36	1.30
38146095--38146142	18	2.7	17	81	12	53	62	4	2	31	1.26
38146162--38146197	14	2.5	15	90	4	56	52	0	5	41	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172