genome.fa.s10.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  145  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47618896--47618939	19	2.3	20	84	7	56	27	22	11	38	1.88
47621513--47621542	8	3.6	8	91	8	51	73	13	0	13	1.10
47623695--47624004	44	7.2	43	64	16	158	26	20	25	27	1.99
47623640--47624045	85	4.7	86	92	1	636	28	21	24	24	1.99
47623638--47624171	85	6.2	86	87	1	635	27	20	25	26	1.99
47624167--47624275	44	2.5	44	77	3	103	34	19	19	26	1.95
47626919--47627040	61	2.1	57	80	11	131	37	5	6	50	1.52
47630610--47630748	63	2.2	64	96	2	255	36	4	2	56	1.34
47631340--47631413	27	2.7	27	80	4	76	41	2	1	54	1.23
47631733--47631783	26	2.0	25	84	3	66	64	1	0	33	1.05
47632831--47632864	16	2.1	17	94	5	61	0	52	0	47	1.00
47635210--47635257	24	2.0	24	100	0	96	37	20	4	37	1.72
47651249--47651295	23	2.0	23	100	0	94	17	21	0	61	1.34
47651622--47651659	18	2.1	18	100	0	76	28	23	15	31	1.96
47657553--47657707	50	3.1	50	99	0	303	40	21	7	30	1.82
47662364--47662580	46	4.7	46	81	5	226	23	31	19	25	1.98
47667568--47667621	21	2.6	21	82	8	67	75	1	11	11	1.11
47673064--47673159	25	3.9	24	78	4	86	34	22	25	17	1.96
47677477--47677598	51	2.4	51	97	0	226	29	23	13	33	1.93
47677518--47677649	58	2.3	58	87	0	192	28	25	13	33	1.93
47677480--47677649	51	3.2	51	81	11	196	28	24	14	32	1.95
47684163--47684276	58	2.0	58	91	0	183	27	24	14	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47689796--47689836	19	2.1	20	86	4	57	29	17	4	48	1.67
47697927--47698199	44	6.2	45	67	15	124	30	16	25	27	1.97
47698014--47698306	88	3.3	88	69	12	258	29	19	25	26	1.98
47697923--47698353	177	2.4	175	84	5	480	30	18	25	25	1.98
47698014--47698351	88	3.8	88	70	11	219	29	18	25	26	1.98
47698322--47698532	45	4.8	43	68	15	135	29	19	26	25	1.98
47698147--47698685	133	4.1	134	79	6	533	29	19	25	25	1.99
47698626--47698919	133	2.3	131	79	4	301	29	18	21	29	1.97
47698697--47699228	45	11.7	44	67	10	185	35	17	19	28	1.94
47698850--47699211	140	2.6	141	90	1	548	37	16	19	27	1.93
47700553--47700614	9	6.9	9	81	3	72	27	1	0	70	0.96
47700552--47700746	3	63.7	3	67	18	64	29	8	1	60	1.35
47700553--47700615	18	3.5	18	86	0	90	28	1	0	69	0.97
47700706--47700746	23	1.9	22	85	14	59	29	4	4	60	1.38
47700714--47700767	20	2.5	23	79	11	60	24	11	3	61	1.46
47700883--47701028	3	47.7	3	70	14	77	28	6	2	63	1.32
47708321--47708484	43	3.9	41	79	9	170	23	18	25	32	1.97
47708321--47708487	85	2.0	85	82	7	205	23	17	25	32	1.97
47710536--47710588	23	2.3	23	100	0	106	20	11	30	37	1.88
47714408--47714442	11	2.8	13	83	16	56	57	20	8	14	1.63
47715862--47716087	56	4.0	56	99	0	443	41	22	10	25	1.86
47717188--47717272	29	2.9	27	75	10	71	25	11	22	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47717188--47717285	31	3.2	30	73	5	90	25	12	21	40	1.88
47721885--47721925	22	1.9	21	85	5	55	31	0	0	68	0.90
47721885--47721931	22	2.3	20	82	10	51	27	0	0	72	0.85
47724968--47725101	67	2.0	69	85	5	184	39	4	5	50	1.45
47725011--47725059	20	2.8	17	75	19	55	42	4	2	51	1.32
47727880--47727927	11	4.3	11	78	2	51	70	2	4	22	1.15
47727868--47727916	20	2.5	20	80	6	55	71	4	2	22	1.13
47729502--47729561	30	2.0	30	90	0	93	58	13	1	26	1.45
47734891--47734947	28	2.0	28	89	0	87	36	19	19	24	1.94
47736873--47736904	3	10.7	3	100	0	64	65	0	0	34	0.93
47738160--47738216	29	2.0	29	96	0	105	40	8	22	28	1.84
47741638--47741685	24	2.0	24	95	0	87	41	6	31	20	1.77
47748681--47748710	15	1.9	16	93	6	53	40	16	13	30	1.87
47750757--47750825	31	2.2	31	84	0	84	37	14	7	40	1.74
47752130--47752164	17	2.1	17	88	0	52	68	17	0	14	1.21
47754272--47754746	256	1.9	256	89	0	736	30	13	18	37	1.90
47766235--47766662	227	1.9	227	85	0	588	31	19	21	27	1.98
47769034--47769490	253	1.8	253	88	0	700	29	14	19	37	1.91
47770501--47770529	2	14.5	2	100	0	58	51	0	0	48	1.00
47774806--47774847	22	2.0	21	86	13	59	52	4	0	42	1.22
47780711--47780783	30	2.4	31	95	2	130	0	17	2	79	0.85
47780732--47780803	30	2.4	30	86	4	92	2	18	5	73	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47780696--47780779	4	22.0	4	73	16	63	0	22	1	76	0.86
47784243--47784315	34	2.1	34	94	0	128	39	24	9	26	1.86
47785485--47785533	24	2.0	24	100	0	98	24	12	26	36	1.91
47787476--47787522	21	2.3	20	85	7	67	61	10	2	25	1.39
47787476--47787517	21	2.0	21	90	4	68	64	11	2	21	1.38
47788208--47788247	21	1.9	21	85	10	55	25	47	7	20	1.75
47788217--47788254	20	1.9	20	84	10	51	26	44	7	21	1.79
47790712--47790745	14	2.4	14	90	5	50	17	0	0	82	0.67
47790737--47790920	96	1.9	97	88	3	282	32	23	14	29	1.95
47797774--47797816	22	2.0	22	100	0	86	34	18	4	41	1.71
47799303--47799345	4	10.8	4	85	14	54	72	0	0	27	0.85
47799307--47799359	25	2.1	25	82	6	63	73	0	3	22	0.99
47803844--47804013	92	1.8	93	92	1	288	29	30	20	20	1.97
47803836--47804004	46	3.7	46	78	15	204	30	30	18	20	1.96
47807956--47808127	93	1.8	93	88	0	263	27	28	21	22	1.99
47810517--47810556	15	2.7	15	88	3	64	60	10	17	12	1.59
47813446--47813617	93	1.8	93	92	0	290	27	29	20	21	1.98
47813438--47813613	46	3.8	46	78	10	196	28	28	20	21	1.98
47815395--47815427	17	2.0	17	94	5	59	36	15	0	48	1.45
47815690--47815963	46	6.0	46	90	0	361	21	23	14	40	1.90
47821624--47821704	40	2.1	40	90	6	132	60	3	12	23	1.48
47822435--47822483	10	4.9	10	85	5	64	65	0	10	24	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47822929--47823162	107	2.2	105	80	5	263	29	17	25	27	1.98
47834052--47834076	11	2.3	11	100	0	50	52	8	12	28	1.66
47844398--47844455	30	1.9	30	89	0	89	41	3	24	31	1.71
47849754--47849785	13	2.5	13	94	0	55	31	0	12	56	1.37
47851540--47851611	37	1.9	37	83	10	94	58	6	5	29	1.47
47851688--47851925	118	2.0	119	93	4	406	48	7	21	22	1.75
47852112--47852365	127	2.0	127	94	0	445	21	25	22	29	1.99
47852375--47852547	87	2.0	86	97	1	328	66	5	17	10	1.41
47852708--47852998	143	2.0	144	96	0	539	15	12	34	38	1.85
47852980--47853237	128	2.0	128	98	0	498	20	7	33	37	1.81
47853771--47854089	88	3.6	87	80	8	344	34	19	18	27	1.95
47853771--47854485	164	4.3	176	76	16	587	33	20	18	27	1.96
47854004--47854400	75	5.1	74	76	12	345	32	21	18	27	1.97
47853921--47854472	164	3.4	160	84	10	614	32	21	18	27	1.97
47854386--47854416	16	1.9	16	100	0	62	64	6	16	12	1.47
47854311--47854485	89	2.0	90	91	1	289	38	21	17	23	1.93
47862556--47863594	75	13.9	75	99	0	2024	29	22	16	31	1.95
47899087--47899142	26	2.2	25	78	9	60	25	5	1	67	1.21
47900729--47900850	45	2.7	45	92	0	199	42	13	21	22	1.87
47900729--47900796	23	3.0	23	63	25	54	45	14	19	20	1.85
47905162--47905207	23	2.0	23	100	0	92	21	8	13	56	1.63
47906864--47906923	21	3.1	19	78	11	59	33	3	3	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47906852--47906926	10	7.5	10	73	11	64	36	2	2	58	1.26
47909630--47909667	18	2.1	18	85	9	51	39	5	0	55	1.23
47921910--47921971	31	2.0	31	87	6	90	43	11	9	35	1.73
47923370--47923409	20	2.0	20	85	14	55	57	5	5	32	1.42
47936742--47936767	11	2.4	11	100	0	52	0	7	0	92	0.39
47942591--47942631	12	3.4	12	89	0	55	65	24	7	2	1.30
47942602--47942631	4	7.5	4	92	0	51	70	26	3	0	1.03
47949368--47949418	27	2.0	26	85	11	70	56	3	0	39	1.18
47949433--47949473	21	2.0	21	90	0	64	58	0	2	39	1.11
47952507--47952537	16	2.0	16	93	6	55	48	0	12	38	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172