genome.fa.s10.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  56482370

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   

This is table  159  of  172  ( 20562 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52051538--52051658	25	4.6	25	77	11	125	47	13	18	20	1.81
52051532--52051658	56	2.3	56	91	0	209	48	13	17	20	1.80
52051561--52051658	31	3.4	30	73	16	107	47	14	18	19	1.82
52051796--52051859	31	2.0	32	84	3	85	37	20	23	18	1.94
52052161--52052219	27	2.2	28	81	9	77	30	18	22	28	1.97
52052171--52052285	27	4.3	27	85	2	124	29	19	16	34	1.94
52052239--52052705	27	17.3	27	83	0	538	31	9	20	38	1.84
52052242--52052705	108	4.3	107	89	2	624	31	9	20	39	1.84
52053934--52054000	33	2.0	33	100	0	134	46	20	11	20	1.82
52054595--52054768	46	3.7	46	80	8	174	22	28	19	29	1.98
52054594--52054768	92	1.9	94	84	8	241	22	28	20	29	1.98
52055922--52055977	27	2.1	27	100	0	112	14	21	7	57	1.61
52057204--52057423	109	2.0	109	92	1	370	33	15	21	29	1.95
52063232--52063269	18	2.1	18	90	0	58	78	2	10	7	1.04
52063261--52063307	20	2.4	19	80	16	51	76	0	4	19	0.95
52081455--52081592	46	3.0	46	83	1	177	23	18	23	34	1.97
52088880--52089053	47	3.7	47	83	6	194	20	18	27	33	1.96
52090333--52090455	49	2.5	49	85	4	149	23	26	18	30	1.98
52096736--52096779	13	3.0	15	84	15	65	59	0	0	40	0.98
52096739--52096773	8	4.4	8	92	0	61	60	0	0	40	0.97
52097713--52097744	6	5.3	6	100	0	64	18	15	15	50	1.79
52111627--52112010	128	3.0	126	87	3	583	29	15	17	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52123131--52123290	42	3.7	43	76	12	159	26	21	25	26	1.99
52123745--52123776	12	2.6	13	90	9	50	18	6	25	50	1.70
52133117--52133149	14	2.3	15	89	5	50	57	6	9	27	1.53
52137344--52137380	14	2.7	14	88	12	51	5	2	8	83	0.88
52138839--52138866	14	2.0	14	100	0	56	21	21	7	50	1.72
52150105--52150607	266	1.9	266	83	9	670	35	18	15	30	1.92
52157167--52157277	34	3.3	34	93	3	181	41	11	20	26	1.87
52163096--52163125	3	9.7	3	92	7	51	63	0	3	33	1.11
52164534--52164843	155	2.0	155	97	0	584	33	16	8	41	1.79
52172354--52172396	21	2.0	21	95	0	77	46	25	4	23	1.71
52175803--52176174	196	1.9	196	94	1	656	25	19	9	45	1.81
52176202--52176244	15	3.0	14	76	6	50	32	9	0	58	1.30
52176881--52176970	45	2.0	45	97	0	171	27	13	16	42	1.86
52177834--52177865	12	2.6	13	90	9	50	50	25	6	18	1.70
52178314--52178473	86	1.9	85	83	6	207	27	25	20	26	1.99
52179020--52179077	25	2.5	23	84	13	82	36	13	12	37	1.82
52179030--52179083	25	2.2	25	100	0	108	38	12	11	37	1.79
52181009--52181073	21	3.2	21	73	20	75	40	23	26	10	1.87
52180992--52181091	39	2.6	39	95	0	173	37	25	26	12	1.90
52186493--52186522	15	2.0	15	93	0	51	40	10	0	50	1.36
52192178--52192226	3	16.3	3	95	0	89	0	32	2	65	1.04
52196592--52196704	55	2.1	55	96	0	208	45	11	4	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52196619--52196710	28	3.3	28	63	14	73	47	13	4	34	1.62
52202768--52202831	19	3.6	18	77	6	67	39	4	0	56	1.20
52204338--52204367	15	2.1	15	93	6	53	0	0	23	76	0.78
52207019--52207044	13	2.0	13	100	0	52	15	15	38	30	1.88
52209432--52209463	16	2.0	16	100	0	64	12	12	25	50	1.75
52209577--52209680	45	2.3	45	89	0	154	38	17	18	25	1.92
52209651--52209710	30	2.0	30	96	0	111	35	20	21	23	1.96
52209608--52209755	75	2.0	75	98	0	287	37	17	20	25	1.94
52209681--52209780	45	2.2	45	87	0	146	40	15	21	24	1.91
52209880--52210053	45	3.9	45	90	0	249	25	18	15	40	1.90
52210078--52210280	46	4.5	46	96	1	374	36	14	22	27	1.92
52210078--52210280	91	2.2	91	100	0	406	36	14	22	27	1.92
52219976--52220083	43	2.5	43	83	0	135	34	25	15	25	1.95
52220897--52220925	13	2.1	14	93	6	51	55	10	0	34	1.34
52222930--52222981	27	1.9	27	92	0	86	23	25	9	42	1.84
52223071--52223156	31	2.8	30	82	7	109	26	26	18	27	1.98
52223149--52223262	33	3.5	33	83	4	142	26	22	13	37	1.91
52225713--52225768	29	1.9	29	100	0	112	21	17	17	42	1.89
52229081--52229136	29	1.9	29	100	0	112	21	17	17	42	1.89
52235723--52235758	18	2.0	18	94	0	63	36	0	33	30	1.58
52235726--52235773	18	2.7	17	84	9	60	37	0	31	31	1.58
52237600--52237719	61	2.0	60	96	1	222	31	16	7	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52241614--52241658	22	2.0	23	91	4	74	42	20	17	20	1.90
52241844--52241923	28	2.8	29	84	3	108	47	33	3	15	1.63
52252351--52252391	16	2.6	15	85	11	55	46	9	0	43	1.36
52253218--52253320	50	2.0	51	92	3	172	43	14	3	37	1.64
52263384--52263543	76	2.1	76	92	1	266	50	8	1	40	1.43
52263660--52263704	20	2.3	19	81	7	54	48	4	2	44	1.35
52265572--52265758	41	4.6	41	95	2	315	30	24	19	25	1.98
52273201--52273428	41	5.6	41	95	3	390	30	24	19	26	1.98
52301737--52301780	23	1.9	23	85	0	61	18	40	4	36	1.71
52308271--52308544	92	3.0	92	89	1	399	26	13	14	46	1.81
52319616--52320118	232	2.2	227	80	5	582	35	10	17	36	1.84
52323185--52323217	13	2.5	13	90	9	50	12	15	15	57	1.65
52336791--52336859	31	2.3	31	82	7	79	44	8	10	36	1.69
52338313--52338371	29	2.0	29	100	0	118	42	0	33	23	1.55
52353152--52353733	204	2.8	206	85	2	832	31	17	21	29	1.96
52355334--52355384	20	2.4	21	70	9	50	33	3	1	60	1.26
52355368--52355399	14	2.3	14	94	0	55	43	3	0	53	1.16
52366694--52366751	19	3.1	19	78	7	66	34	0	1	63	1.04
52367426--52367483	3	19.3	3	96	0	107	1	32	0	65	1.03
52373540--52373576	2	18.5	2	94	0	65	45	0	54	0	1.00
52373864--52373914	25	2.0	25	88	0	75	41	9	5	43	1.62
52374518--52374552	3	11.7	3	93	0	61	2	34	0	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52376006--52376039	15	2.3	15	94	0	59	32	17	14	35	1.91
52376225--52376253	12	2.4	12	100	0	58	44	10	6	37	1.65
52383263--52383399	55	2.5	55	80	3	141	27	29	25	18	1.98
52389769--52389855	30	2.9	30	84	0	102	12	26	32	28	1.93
52393800--52393869	6	11.7	6	70	11	54	21	4	1	72	1.09
52393802--52393851	23	2.2	23	89	7	75	22	2	2	74	1.03
52399607--52399749	70	2.0	70	98	0	277	36	12	21	29	1.90
52402051--52402095	22	2.0	22	91	0	72	48	15	2	33	1.57
52405826--52405870	22	2.0	22	91	0	72	48	15	2	33	1.57
52408390--52408414	6	4.2	6	100	0	50	0	0	48	52	1.00
52411643--52411672	2	15.0	2	100	0	60	50	0	50	0	1.00
52412245--52412276	15	2.1	15	100	0	64	21	0	43	34	1.53
52413297--52413447	81	1.9	80	83	5	198	46	11	3	38	1.58
52413967--52414012	17	2.6	19	80	13	53	67	0	2	30	1.03
52415885--52415932	23	2.1	23	100	0	96	33	4	25	37	1.75
52416106--52416133	14	2.0	14	100	0	56	28	21	14	35	1.92
52418542--52418590	10	4.9	10	84	0	71	24	8	0	67	1.18
52420904--52420992	23	4.0	23	85	8	123	37	23	19	20	1.94
52421545--52421601	27	2.1	28	81	15	66	45	19	0	35	1.50
52423027--52423083	26	2.1	28	84	12	75	7	15	3	73	1.18
52423090--52423128	13	2.8	13	81	11	51	48	0	0	51	1.00
52428067--52428095	14	2.0	15	93	6	51	3	20	6	68	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52428135--52428190	12	4.5	12	82	6	58	55	0	3	41	1.17
52428757--52428803	19	2.4	19	76	20	51	36	19	4	40	1.71
52432648--52432681	17	1.9	18	88	5	52	52	5	20	20	1.67
52437775--52437885	47	2.4	47	84	6	154	35	23	16	25	1.95
52438500--52438553	26	2.1	26	100	0	108	24	24	3	48	1.67
52441803--52441874	36	2.0	37	94	2	128	38	11	34	15	1.83
52442046--52442133	36	2.3	36	84	11	106	34	19	23	22	1.97
52443597--52443636	18	2.2	19	86	4	55	45	25	0	30	1.54
52447936--52447989	18	2.9	19	77	20	60	55	7	3	33	1.45
52447942--52448010	18	3.8	17	70	22	52	57	5	4	31	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172