genome.fa.s645.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  10  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2654412--2654480	32	2.2	32	100	0	138	31	13	18	36	1.89
2654702--2654751	26	2.0	25	84	11	66	50	4	2	44	1.32
2663135--2663171	18	2.1	18	94	0	65	29	0	0	70	0.88
2663135--2663174	17	2.3	18	91	4	64	32	0	0	67	0.91
2663221--2663273	22	2.2	24	87	9	74	52	1	0	45	1.11
2672484--2672518	13	2.7	13	90	0	52	54	0	0	45	0.99
2674084--2674122	20	2.0	20	84	0	51	61	2	0	35	1.10
2675146--2675180	18	1.9	18	94	0	61	71	0	14	14	1.15
2675159--2675208	25	2.0	24	84	3	64	66	0	10	24	1.22
2676031--2676083	21	2.5	22	81	9	56	41	0	5	52	1.25
2677310--2677368	27	2.1	28	93	6	102	20	3	25	50	1.63
2680040--2680126	43	2.0	42	91	2	138	26	8	11	54	1.64
2686315--2686344	14	2.1	14	93	0	51	56	10	20	13	1.65
2698092--2698127	16	2.2	17	85	10	56	47	0	0	52	1.00
2705427--2705453	3	9.0	3	100	0	54	33	0	33	33	1.58
2706247--2706287	2	22.0	2	83	14	52	53	2	0	43	1.13
2708517--2708553	2	18.5	2	100	0	74	51	0	0	48	1.00
2710360--2710511	52	2.9	52	87	0	198	42	9	23	25	1.83
2711091--2711136	24	1.9	24	86	0	65	28	13	39	19	1.89
2711445--2711596	52	2.9	52	87	2	200	41	9	23	25	1.84
2712160--2712207	25	1.9	25	86	0	69	27	12	41	18	1.86
2712516--2712667	52	2.9	52	87	2	200	41	9	23	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2714068--2714096	2	14.5	2	100	0	58	51	0	0	48	1.00
2715814--2715859	24	1.9	24	95	0	83	36	26	8	28	1.86
2717345--2717645	150	2.0	150	95	0	539	19	22	25	31	1.98
2719438--2719466	2	14.5	2	100	0	58	51	0	0	48	1.00
2722762--2722798	14	2.6	14	100	0	74	21	0	35	43	1.53
2725039--2725068	12	2.5	12	94	0	51	46	30	0	23	1.52
2726451--2726723	58	4.8	58	85	6	344	38	10	6	43	1.66
2726946--2726995	16	3.2	16	77	13	59	0	48	0	52	1.00
2727579--2727743	4	41.5	4	64	18	51	63	3	4	29	1.31
2727612--2727737	15	8.8	13	75	20	62	61	3	4	30	1.32
2727589--2727743	7	21.6	7	69	21	83	63	3	3	29	1.30
2727629--2727806	74	2.4	76	79	8	179	66	3	4	25	1.28
2727760--2727796	16	2.2	17	90	4	58	75	2	2	18	1.04
2727986--2728236	42	5.9	42	78	5	202	40	21	14	23	1.90
2728021--2728236	42	5.1	42	80	3	222	41	20	14	23	1.89
2729258--2729301	13	3.5	12	81	6	52	11	13	0	75	1.06
2729254--2729315	25	2.5	24	82	12	81	11	11	0	77	1.00
2733314--2733376	27	2.3	27	84	10	76	57	1	0	41	1.08
2733314--2733375	29	2.2	28	82	5	72	56	1	0	41	1.09
2733359--2733383	12	2.1	12	100	0	50	76	8	0	16	1.02
2734866--2734974	16	7.2	15	81	12	125	48	32	0	18	1.54
2734866--2734971	30	3.5	31	85	11	141	47	33	0	18	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2734962--2735027	15	4.5	15	73	19	59	51	37	0	10	1.37
2734963--2735027	7	9.0	7	71	18	53	52	38	0	9	1.34
2734963--2735027	29	2.3	27	76	21	69	52	38	0	9	1.34
2739689--2739735	21	2.0	24	84	15	64	27	17	29	25	1.97
2740036--2740371	58	5.7	59	84	5	405	36	11	6	45	1.66
2741709--2741874	80	2.1	80	88	2	244	30	18	25	25	1.98
2741971--2741995	13	1.9	13	100	0	50	20	24	16	40	1.91
2742511--2742540	13	2.3	13	94	0	51	66	0	6	26	1.16
2743968--2744070	31	3.3	31	87	2	154	39	12	17	30	1.87
2743983--2744080	31	3.2	31	80	8	119	39	13	15	31	1.86
2744500--2744550	6	8.2	6	83	16	52	84	0	1	13	0.71
2744503--2744550	7	6.4	7	81	13	60	85	0	2	12	0.69
2744503--2744550	16	3.2	15	85	8	62	85	0	2	12	0.69
2744500--2744545	9	4.9	9	84	7	56	84	0	2	13	0.71
2744503--2744550	23	2.0	24	92	4	80	85	0	2	12	0.69
2745027--2745061	11	3.1	11	88	8	52	85	0	14	0	0.59
2746461--2746485	11	2.3	11	100	0	50	28	8	20	44	1.79
2746863--2746902	5	7.8	5	88	5	62	17	0	0	82	0.67
2748758--2748802	22	2.0	22	100	0	90	26	17	28	26	1.98
2749528--2749556	3	9.7	3	100	0	58	68	0	0	31	0.89
2750641--2750713	2	39.0	2	80	17	86	53	1	1	43	1.17
2750643--2750712	7	10.0	7	89	4	106	54	1	1	42	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2752049--2752084	18	2.0	18	88	0	54	36	13	25	25	1.93
2752635--2752664	2	15.0	2	100	0	60	50	0	0	50	1.00
2755365--2755399	2	17.5	2	87	0	52	45	0	0	54	0.99
2757087--2757132	24	1.9	24	95	0	83	36	26	8	28	1.86
2758622--2758922	150	2.0	150	94	0	530	20	21	25	31	1.98
2760612--2760636	2	12.5	2	100	0	50	52	0	0	48	1.00
2760636--2760668	2	16.5	2	100	0	66	51	0	48	0	1.00
2762166--2762251	24	3.6	24	90	6	131	37	8	0	54	1.30
2762171--2762251	25	3.3	25	92	3	137	35	8	0	55	1.31
2763046--2763081	18	2.0	18	100	0	72	27	5	38	27	1.79
2764583--2764678	46	2.1	46	90	3	149	55	8	12	23	1.64
2765674--2765826	8	21.6	7	72	20	70	66	4	0	29	1.12
2765681--2765820	49	2.8	49	92	3	228	65	5	0	30	1.14
2773046--2773402	177	2.0	177	94	0	624	30	12	16	40	1.85
2773420--2773537	44	2.7	43	85	5	157	31	13	12	42	1.82
2773420--2773554	43	3.1	43	83	2	162	31	14	12	41	1.83
2778665--2778706	13	3.2	13	86	10	50	28	0	0	71	0.86
2779959--2780011	21	2.8	18	76	15	52	7	3	20	67	1.31
2780469--2780535	8	8.9	8	93	3	70	19	0	11	68	1.20
2780482--2780515	14	2.4	14	100	0	68	26	0	14	58	1.36
2780951--2781093	48	2.9	50	81	5	159	39	19	13	27	1.89
2781287--2781788	75	6.5	75	84	5	515	39	19	12	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2781972--2782054	38	2.3	36	85	6	114	37	13	16	32	1.88
2782000--2782099	46	2.2	46	92	0	164	42	11	15	32	1.81
2782292--2782345	21	2.5	21	82	8	56	16	16	9	57	1.64
2783008--2783048	7	5.7	7	86	13	57	9	4	0	85	0.73
2788473--2788522	22	2.4	21	83	6	57	64	8	0	28	1.22
2789498--2789603	37	2.8	37	86	1	149	25	5	34	33	1.80
2789676--2789749	8	9.6	8	82	5	64	16	0	9	74	1.07
2797759--2797792	2	17.0	2	100	0	68	50	0	0	50	1.00
2799950--2799975	9	2.9	9	100	0	52	34	34	0	30	1.58
2804554--2804579	12	2.2	12	100	0	52	65	0	0	34	0.93
2805848--2805885	2	19.0	2	100	0	76	50	0	0	50	1.00
2808418--2808449	2	16.0	2	93	0	55	50	0	3	46	1.17
2833124--2833162	16	2.5	16	79	4	53	51	25	10	12	1.71
2835903--2835930	2	14.0	2	100	0	56	50	0	0	50	1.00
2838107--2838154	20	2.4	19	83	13	53	6	4	6	83	0.91
2839739--2839796	31	1.9	31	85	3	82	44	6	5	43	1.53
2839748--2839821	31	2.4	30	80	13	80	41	6	5	45	1.53
2840718--2840769	14	3.6	14	79	7	52	57	3	0	38	1.17
2840742--2840788	16	2.9	16	78	12	51	44	2	0	53	1.12
2860748--2860782	17	1.9	19	88	11	56	37	0	0	62	0.95
2861823--2861849	2	13.5	2	100	0	54	51	0	0	48	1.00
2864281--2864383	52	2.0	52	94	0	179	40	16	7	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2867755--2867789	3	11.7	3	93	0	61	0	37	0	62	0.95
2868595--2869131	125	4.3	124	82	7	545	39	10	10	39	1.74
2868626--2869131	187	2.7	186	75	8	479	39	10	10	39	1.74
2868580--2869122	62	8.7	63	74	11	382	39	10	11	39	1.75
2890263--2890307	22	2.0	22	100	0	90	40	28	13	17	1.88
2896174--2896220	14	3.4	14	82	2	60	53	0	0	46	1.00
2896768--2896802	17	1.9	19	88	11	56	57	0	2	40	1.14
2896770--2896812	17	2.5	17	80	3	50	55	2	2	39	1.25
2897357--2897416	27	2.2	27	82	5	68	36	6	3	53	1.44
2897955--2898000	18	2.5	20	79	17	62	47	4	0	47	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133