genome.fa.s645.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  23  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5654118--5654254	61	2.2	60	79	7	159	44	10	13	30	1.79
5654855--5654910	10	5.4	10	80	16	51	26	7	0	66	1.18
5654849--5654900	27	1.9	27	92	0	86	30	3	0	65	1.10
5656726--5656750	2	12.5	2	100	0	50	52	0	0	48	1.00
5660656--5660708	27	2.0	27	85	7	72	20	7	3	67	1.31
5663147--5663202	22	2.6	20	84	15	76	55	0	0	44	0.99
5663147--5663209	22	3.0	21	78	17	69	53	0	0	46	1.00
5670356--5670405	24	2.1	24	96	3	93	34	48	2	16	1.57
5677025--5677061	13	2.9	13	92	4	58	67	0	2	29	1.04
5679148--5679362	112	1.9	112	93	0	367	44	13	16	25	1.85
5688651--5688686	12	3.1	11	88	11	54	33	0	0	66	0.92
5688686--5688744	30	2.0	30	86	0	82	45	0	1	52	1.10
5691432--5691548	36	3.3	35	72	9	101	36	13	29	19	1.91
5691523--5691612	33	2.7	33	80	0	99	42	13	26	17	1.86
5694364--5694428	15	4.3	15	75	7	60	20	41	1	36	1.61
5705390--5705439	15	3.2	15	77	8	55	54	2	2	42	1.23
5708635--5708668	14	2.4	14	85	0	50	32	2	0	64	1.08
5709426--5709457	16	1.9	17	93	6	57	15	6	21	56	1.62
5709427--5709468	16	2.6	16	81	7	50	14	4	16	64	1.45
5711022--5711087	22	3.0	22	75	6	53	45	6	10	37	1.64
5711238--5711279	22	1.9	22	95	0	75	52	4	9	33	1.55
5711295--5711355	22	2.8	22	80	7	63	54	6	6	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5711518--5711573	22	2.5	22	80	5	60	55	3	7	33	1.45
5712488--5712552	22	3.0	21	88	4	94	44	1	7	46	1.41
5712859--5713315	22	20.8	22	69	11	141	47	6	9	36	1.61
5712857--5713596	44	16.6	44	71	10	184	47	6	8	37	1.61
5712860--5712966	33	3.2	33	73	4	81	48	5	5	40	1.50
5712864--5712944	11	7.5	11	75	6	67	50	3	4	40	1.42
5713056--5713140	43	2.0	43	81	4	100	50	5	8	35	1.56
5713233--5713596	66	5.4	66	72	8	194	47	6	7	38	1.58
5713220--5713433	118	1.8	118	80	6	263	47	4	7	40	1.52
5713329--5713565	22	10.8	22	75	4	120	46	8	7	37	1.62
5713909--5713953	21	2.3	19	85	14	56	57	6	0	35	1.25
5713996--5714061	27	2.6	25	76	7	62	53	7	0	39	1.30
5714088--5714124	14	2.5	16	87	12	53	54	0	0	45	1.00
5720034--5720078	24	2.0	22	84	16	58	53	4	0	42	1.21
5720512--5720552	20	2.0	20	95	0	73	43	0	7	48	1.30
5724034--5724063	3	10.0	3	100	0	60	66	0	0	33	0.92
5732478--5732509	2	16.0	2	100	0	64	50	0	0	50	1.00
5733146--5733191	19	2.4	20	78	7	51	43	4	2	50	1.34
5740151--5740176	5	5.2	5	100	0	52	80	0	19	0	0.71
5746875--5746953	19	4.2	19	73	7	54	41	30	7	20	1.80
5747575--5747625	16	3.2	16	80	5	68	45	21	5	27	1.75
5747574--5747675	31	3.3	31	80	0	114	36	26	8	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5751889--5751964	30	2.6	29	78	4	80	35	2	6	55	1.40
5751994--5752066	30	2.4	30	81	0	83	47	2	8	41	1.47
5752364--5752401	2	19.0	2	100	0	76	50	0	0	50	1.00
5754542--5754573	15	2.1	15	94	0	55	71	6	15	6	1.26
5759151--5759235	42	2.0	44	95	4	156	62	7	16	14	1.52
5761037--5761093	29	2.0	29	86	13	82	49	0	7	43	1.29
5761730--5761762	2	16.5	2	100	0	66	48	0	0	51	1.00
5774266--5774295	11	2.7	11	94	0	51	83	3	10	3	0.88
5775109--5775355	47	5.2	47	81	1	251	31	9	16	42	1.80
5775128--5775355	95	2.4	94	80	3	260	30	10	16	42	1.82
5775393--5775452	28	2.1	28	87	6	86	33	13	6	46	1.69
5775479--5775613	42	3.1	43	80	9	132	35	9	14	40	1.79
5775804--5775845	22	1.9	22	90	0	66	19	30	28	21	1.97
5777169--5777213	20	2.2	21	84	11	58	71	2	0	26	0.98
5784429--5784482	11	4.6	11	78	13	54	3	14	1	79	0.95
5784725--5784772	24	2.0	24	87	0	69	37	10	20	31	1.87
5786645--5786679	18	1.9	18	88	0	52	34	28	20	17	1.95
5793401--5793454	17	3.3	17	78	17	60	53	0	1	44	1.11
5793470--5793516	19	2.6	17	81	18	60	42	4	4	48	1.42
5800111--5800160	22	2.3	22	93	3	84	56	4	10	30	1.51
5800271--5800465	18	11.8	17	69	23	125	56	1	1	41	1.15
5800335--5800486	22	6.9	21	68	24	82	56	1	1	40	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5800287--5800434	78	1.9	78	88	1	215	56	1	1	41	1.16
5800301--5800470	15	10.9	15	71	20	127	56	1	1	40	1.17
5800518--5800585	19	3.6	19	71	11	59	45	0	0	54	0.99
5800515--5800585	18	3.8	19	69	12	67	45	0	0	54	0.99
5800591--5800646	26	2.2	24	90	6	85	48	1	1	48	1.22
5800716--5800747	16	2.0	16	93	0	55	43	21	0	34	1.53
5803978--5804017	21	1.9	21	94	0	71	20	25	5	50	1.68
5805024--5805066	18	2.5	16	82	14	50	11	9	0	79	0.95
5805189--5805622	121	3.6	120	85	4	568	49	5	8	36	1.56
5810917--5810965	24	2.0	25	88	4	73	38	2	4	55	1.31
5811913--5811963	23	2.1	23	82	13	59	45	0	7	47	1.32
5813221--5813255	17	2.1	16	89	5	52	31	2	0	65	1.07
5813971--5814033	23	2.7	23	74	13	58	46	1	0	52	1.10
5816344--5816393	20	2.5	20	96	0	91	50	6	26	18	1.69
5817951--5818218	63	4.3	63	80	6	294	42	4	5	46	1.48
5817950--5818217	126	2.1	124	83	7	337	42	4	5	46	1.49
5818326--5818475	73	2.1	73	79	5	160	42	6	8	42	1.60
5818411--5818534	62	2.0	62	82	3	151	43	6	8	41	1.60
5827571--5827625	24	2.5	21	82	11	65	72	5	3	18	1.18
5833559--5833662	53	2.0	54	84	3	140	36	11	3	48	1.58
5833711--5833739	14	2.0	15	93	6	51	24	0	6	68	1.13
5852606--5852648	4	10.8	4	94	0	59	51	30	0	18	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5857596--5857629	14	2.4	14	90	0	50	58	2	0	38	1.13
5857747--5857816	22	3.1	22	82	8	88	47	0	0	52	1.00
5857824--5857855	15	2.1	16	88	11	50	56	0	0	43	0.99
5859617--5859641	2	12.5	2	100	0	50	52	0	48	0	1.00
5860701--5860742	22	2.0	20	86	9	57	52	4	4	38	1.44
5862251--5862392	76	1.9	76	86	5	207	35	7	6	51	1.55
5862704--5862743	2	20.0	2	100	0	80	50	0	50	0	1.00
5868924--5868966	21	2.0	21	86	8	61	48	0	4	46	1.22
5873107--5873139	15	2.1	16	88	5	50	42	0	6	51	1.26
5883609--5883633	12	2.1	12	100	0	50	56	8	0	36	1.29
5884648--5884821	21	8.2	21	67	12	79	34	5	9	50	1.58
5885018--5885225	22	9.4	22	72	5	134	38	7	8	45	1.62
5885235--5885472	22	10.9	22	70	2	102	33	11	4	50	1.59
5885235--5885438	44	4.7	44	74	7	164	32	10	4	51	1.58
5885248--5885438	87	2.2	88	95	0	348	31	10	5	52	1.59
5885292--5885446	44	3.5	43	75	6	168	31	10	5	52	1.57
5885507--5885679	22	8.0	22	70	12	108	31	7	9	51	1.62
5885538--5885679	65	2.2	67	80	11	168	30	7	9	52	1.61
5885735--5885803	11	6.3	11	75	6	59	39	5	2	52	1.41
5885735--5885799	22	3.0	22	84	4	69	38	6	3	52	1.42
5886118--5886171	25	2.3	22	84	9	63	35	12	3	48	1.60
5886158--5886214	22	2.6	22	83	10	80	42	7	3	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5886765--5886823	29	2.0	29	80	6	66	37	8	8	45	1.65
5886861--5887039	22	8.2	22	72	13	122	35	9	5	49	1.59
5886881--5886979	43	2.3	42	81	6	101	34	10	7	48	1.64
5887284--5887345	22	2.8	22	77	0	70	40	11	4	43	1.62
5887268--5887368	44	2.3	44	84	3	123	37	10	6	44	1.67
5887341--5887388	22	2.2	23	78	17	57	31	6	12	50	1.65
5887753--5887782	15	2.0	15	93	0	51	63	0	0	36	0.95
5890626--5890707	18	4.4	18	74	11	67	17	1	36	45	1.56
5890622--5890744	56	2.2	56	85	2	158	17	2	34	44	1.62
5890734--5890854	31	4.0	31	74	14	101	19	0	32	47	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133