genome.fa.s645.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  14  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3626228--3626274	21	2.3	21	88	3	69	38	36	12	12	1.82
3626239--3626281	21	2.0	21	90	4	68	30	39	16	13	1.87
3627016--3627071	28	2.0	28	100	0	112	25	14	35	25	1.93
3630592--3630656	29	2.4	27	78	14	71	43	1	0	55	1.09
3631107--3631171	25	2.6	25	81	11	80	35	9	10	44	1.71
3631195--3631227	14	2.4	14	94	0	57	63	0	0	36	0.95
3637467--3637508	20	2.1	20	100	0	84	30	16	33	19	1.94
3637565--3637594	15	2.0	15	100	0	60	46	0	20	33	1.51
3638143--3638236	48	2.0	48	87	8	138	30	20	8	40	1.82
3639396--3639443	18	2.7	18	84	12	71	54	2	0	43	1.12
3639375--3639461	36	2.4	36	83	11	106	51	3	0	44	1.18
3639412--3639524	22	5.1	23	69	22	80	54	1	1	41	1.21
3639410--3639564	18	8.1	18	66	25	61	54	1	1	41	1.19
3639421--3639578	23	6.7	23	71	12	88	53	1	3	41	1.28
3639536--3639585	23	2.2	23	81	0	55	58	2	4	36	1.29
3639690--3639726	18	2.1	18	90	5	58	43	0	5	51	1.24
3640531--3640642	33	3.3	34	80	10	115	43	8	4	43	1.54
3641867--3641932	32	2.1	31	89	10	100	39	15	15	30	1.88
3650753--3650803	24	2.1	23	82	10	57	74	7	1	15	1.13
3656563--3656613	21	2.5	21	90	3	77	50	0	0	49	1.00
3660137--3660193	25	2.2	26	78	15	64	43	7	3	45	1.48
3661868--3661904	20	1.9	19	89	10	58	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3662137--3662187	25	2.0	26	85	7	70	62	0	3	33	1.13
3662137--3662198	25	2.4	24	80	17	63	58	0	4	37	1.20
3677548--3677614	29	2.3	29	82	14	77	50	1	1	46	1.19
3678561--3678683	61	2.0	61	100	0	246	24	21	8	46	1.78
3679439--3679490	12	4.3	12	73	7	52	40	0	1	57	1.10
3679442--3679490	18	2.7	18	74	3	53	38	0	2	59	1.09
3679433--3679502	30	2.3	29	85	7	86	47	1	1	50	1.19
3688587--3688617	11	2.8	11	100	0	62	19	0	29	51	1.47
3689779--3689818	18	2.2	18	86	0	53	82	2	7	7	0.92
3692277--3692312	18	2.0	18	94	0	63	38	19	5	36	1.75
3698043--3698081	12	3.2	12	77	0	51	5	35	5	53	1.45
3698033--3698093	24	2.5	24	91	0	104	3	40	3	52	1.34
3698149--3698183	6	5.8	6	100	0	70	14	17	0	68	1.21
3698152--3698207	18	3.1	18	86	0	67	12	21	5	60	1.51
3698571--3699062	245	2.0	244	99	0	966	41	15	18	24	1.89
3706285--3706310	11	2.4	11	100	0	52	42	0	0	57	0.98
3708991--3709033	19	2.2	20	80	12	54	18	2	2	76	1.00
3709054--3709155	38	2.6	40	78	9	120	31	2	2	62	1.25
3709062--3709161	42	2.4	43	80	11	120	31	3	3	63	1.25
3709046--3709165	10	11.1	10	76	15	89	30	2	3	64	1.23
3709132--3709224	20	4.7	20	81	7	109	25	4	2	67	1.20
3709046--3709165	4	32.0	4	72	15	62	30	2	3	64	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3709132--3709231	40	2.5	41	83	12	129	25	4	2	69	1.17
3710057--3710124	3	22.7	3	96	0	127	30	0	1	67	0.99
3710154--3710186	5	6.8	5	93	6	59	18	0	0	81	0.68
3710155--3710185	9	3.3	9	95	4	53	19	0	0	80	0.71
3710154--3710191	14	2.6	14	91	4	58	18	2	0	78	0.86
3710203--3710419	58	3.7	58	86	5	269	44	6	11	36	1.67
3710204--3710419	119	1.8	115	83	7	276	44	6	12	37	1.67
3710862--3710899	19	2.0	19	85	10	51	31	0	5	63	1.17
3710914--3710952	6	6.7	6	85	14	55	15	0	0	84	0.62
3710922--3710952	11	2.8	11	100	0	62	16	0	0	83	0.64
3710970--3711186	58	3.7	58	88	5	296	44	6	11	37	1.67
3710105--3711610	765	2.0	762	90	2	2351	33	12	14	39	1.85
3711759--3711923	61	2.8	61	82	8	207	45	7	10	36	1.66
3715087--3715118	15	2.1	15	94	0	55	28	31	0	40	1.57
3722320--3722354	16	2.2	16	100	0	70	77	0	11	11	1.00
3722320--3722358	10	4.3	10	75	24	50	79	0	10	10	0.94
3722325--3722360	16	2.2	16	90	0	54	83	0	8	8	0.82
3723371--3723749	42	8.8	43	80	9	350	26	13	19	40	1.89
3723939--3724050	7	15.6	7	72	10	57	18	2	4	74	1.11
3723937--3724003	26	2.6	27	86	9	86	20	0	2	76	0.92
3723937--3724002	34	1.9	34	87	6	98	21	0	3	75	0.93
3723942--3724013	27	2.6	28	78	12	85	19	2	4	73	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3724015--3724162	4	39.0	4	69	14	57	29	3	3	64	1.26
3724081--3724159	22	3.7	21	80	9	63	31	3	1	63	1.20
3724058--3724134	40	1.9	40	89	0	118	33	5	2	58	1.34
3724058--3724158	40	2.5	40	84	4	116	32	4	1	60	1.29
3724080--3724238	43	3.8	41	79	11	146	27	5	1	64	1.26
3725032--3725071	20	2.0	20	90	9	64	30	0	2	67	1.04
3725034--3725076	19	2.2	20	84	12	54	32	0	4	62	1.15
3725118--3725298	61	3.1	61	81	8	225	44	5	9	39	1.61
3738511--3738543	3	11.0	3	93	0	57	66	3	0	30	1.06
3739031--3739077	17	2.8	16	84	12	51	82	4	6	6	0.92
3739810--3739843	17	2.0	17	88	0	50	82	0	2	14	0.79
3739914--3739960	22	2.2	21	84	3	58	80	2	10	6	0.96
3740133--3740168	18	1.9	18	88	5	54	72	5	2	19	1.17
3741390--3741442	17	3.1	17	71	13	54	75	1	11	11	1.13
3742392--3742420	6	5.0	6	95	4	51	86	13	0	0	0.58
3744593--3744663	6	11.7	6	77	10	65	76	1	2	19	0.99
3744593--3744653	25	2.5	24	82	10	70	75	1	1	21	0.98
3744623--3744663	17	2.3	18	88	12	59	75	0	4	19	0.98
3744930--3744974	20	2.3	19	85	14	56	66	0	2	31	1.04
3745853--3745985	63	2.1	62	79	8	135	41	14	14	30	1.85
3746271--3747191	304	3.0	303	77	6	741	36	11	13	38	1.81
3751204--3751654	185	2.4	186	83	5	547	40	11	12	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3758128--3758169	18	2.2	20	83	8	52	30	2	14	52	1.54
3759851--3760015	34	4.9	34	76	7	129	38	18	10	32	1.85
3760666--3760708	12	3.6	12	83	0	59	67	16	0	16	1.24
3760680--3760711	15	2.1	15	94	0	55	68	15	0	15	1.21
3763225--3763258	13	2.5	13	90	4	50	55	0	0	44	0.99
3764780--3764834	15	3.7	15	82	4	67	47	23	1	27	1.62
3764772--3764858	29	3.0	29	76	6	88	47	28	1	22	1.59
3766310--3766379	35	2.0	35	91	0	113	37	18	11	32	1.87
3768606--3768631	13	2.0	13	100	0	52	53	0	0	46	1.00
3769216--3769242	2	13.5	2	100	0	54	51	0	48	0	1.00
3770191--3770283	49	2.0	46	85	6	123	59	7	5	27	1.47
3770454--3770492	20	1.9	21	89	5	62	66	5	7	20	1.36
3774855--3775942	66	16.5	65	74	4	511	28	21	27	22	1.99
3774673--3775939	132	9.6	131	72	4	574	28	21	27	21	1.99
3775045--3775704	264	2.5	264	84	2	725	28	21	27	21	1.99
3774934--3775930	330	3.0	330	81	0	1179	28	21	27	22	1.99
3775191--3775756	264	2.1	264	88	1	855	28	21	28	21	1.99
3775209--3775898	264	2.6	264	83	1	668	28	21	27	22	1.99
3788964--3789017	26	2.2	23	83	9	63	50	7	24	18	1.72
3799654--3799854	104	1.9	104	92	2	341	31	17	15	35	1.91
3801309--3802098	401	2.0	401	95	0	1409	38	13	21	26	1.90
3802052--3802098	12	3.9	12	77	0	58	78	4	14	2	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3806391--3806455	33	2.0	33	93	0	112	38	4	18	38	1.72
3806429--3806560	30	4.5	28	79	13	115	37	8	21	32	1.84
3806428--3806561	60	2.3	59	83	6	164	37	8	21	32	1.83
3814734--3814801	34	1.9	36	82	5	86	22	7	5	64	1.40
3820367--3820439	34	2.1	34	87	0	101	53	4	4	38	1.39
3822211--3822272	29	2.1	29	87	0	88	19	6	16	58	1.59
3822646--3822679	17	1.9	18	88	5	52	50	2	2	44	1.32
3822769--3822909	65	2.2	63	79	12	144	51	1	2	44	1.22
3823367--3823405	21	1.9	20	84	5	51	28	7	7	56	1.55
3826017--3826053	17	2.3	17	90	9	60	29	0	16	54	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133