genome.fa.s645.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  20  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4892904--4892937	13	2.6	13	95	0	59	26	2	0	70	1.01
4893820--4893940	51	2.4	50	82	10	138	42	6	10	39	1.66
4893822--4893957	51	2.7	49	78	14	132	41	6	8	42	1.62
4900242--4900319	33	2.4	33	84	4	95	28	21	10	39	1.86
4900813--4900850	17	2.4	16	86	8	51	21	0	2	76	0.91
4902019--4902044	13	2.0	13	100	0	52	46	0	0	53	1.00
4902094--4902326	103	2.3	106	81	5	273	45	4	10	39	1.59
4902155--4902378	53	4.4	51	75	13	162	42	5	11	41	1.63
4902252--4902394	51	2.8	52	78	11	170	40	6	12	40	1.68
4902373--4902405	17	1.9	17	88	11	50	36	9	0	54	1.32
4903782--4903871	31	3.1	31	90	9	145	43	6	10	40	1.64
4908900--4908930	16	1.9	16	93	0	53	61	6	3	29	1.37
4915846--4915912	31	2.2	31	97	0	125	43	5	8	41	1.60
4920926--4920956	16	1.9	16	93	0	53	61	6	3	29	1.37
4921100--4921146	18	2.5	19	82	6	60	59	0	2	38	1.09
4922680--4922710	15	2.1	15	93	0	53	58	0	16	25	1.38
4927284--4927523	121	2.0	120	91	2	392	30	26	4	38	1.75
4927489--4927586	52	1.9	51	85	6	135	26	17	7	48	1.72
4928396--4928499	52	2.0	52	86	0	145	28	14	5	50	1.65
4930207--4930248	2	21.5	2	95	4	77	50	0	0	50	1.00
4931171--4931201	15	2.1	15	93	0	53	32	9	0	58	1.31
4936606--4936635	16	1.9	15	93	6	51	73	0	6	20	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4937539--4937590	26	2.1	24	82	7	59	50	1	0	48	1.12
4937608--4937692	29	2.9	29	84	7	100	51	0	1	47	1.08
4938596--4938635	18	2.1	20	86	9	57	70	12	7	10	1.35
4940985--4941039	2	27.5	2	100	0	110	0	49	0	50	1.00
4941334--4941418	22	4.0	22	67	11	59	40	7	11	41	1.69
4941346--4941432	42	2.1	42	93	0	147	47	5	12	34	1.66
4947574--4947614	19	2.2	19	86	0	55	2	17	0	80	0.82
4947637--4947674	3	12.7	3	94	0	67	36	0	0	63	0.95
4947934--4947977	22	2.0	22	90	0	70	31	11	11	45	1.76
4950456--4950507	22	2.3	22	83	12	61	59	0	0	40	0.97
4961479--4961540	28	2.2	28	76	18	67	59	6	6	27	1.47
4962225--4962290	33	2.0	33	100	0	132	27	24	15	33	1.95
4964274--4964314	16	2.6	17	77	14	52	48	2	0	48	1.14
4977927--4977958	2	16.0	2	100	0	64	50	0	0	50	1.00
4986059--4986102	9	4.7	9	88	8	61	29	2	0	68	1.02
4986206--4986241	2	18.0	2	100	0	72	50	0	0	50	1.00
4988207--4988236	14	2.1	14	93	0	51	0	23	0	76	0.78
4989929--4989958	4	7.5	4	92	0	51	73	0	0	26	0.84
4992848--4993077	108	2.1	108	87	0	325	31	16	19	32	1.94
5004017--5004074	22	2.5	22	78	13	64	37	3	1	56	1.26
5004015--5004079	33	2.0	33	82	11	80	38	3	1	56	1.24
5013955--5013990	15	2.4	16	82	17	51	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5014617--5014653	18	2.1	18	94	0	65	37	24	0	37	1.56
5015950--5016010	24	2.4	24	83	8	77	42	14	31	11	1.81
5024819--5024865	22	2.2	21	88	7	69	46	0	0	53	1.00
5024825--5024875	22	2.2	24	89	6	79	49	0	0	50	1.00
5024809--5024875	26	2.8	22	86	13	80	46	0	0	53	1.00
5029014--5029040	14	1.9	14	100	0	54	22	29	18	29	1.97
5034653--5034680	13	2.2	13	100	0	56	53	14	17	14	1.73
5036930--5036955	1	26.0	1	100	0	52	100	0	0	0	0.00
5045457--5045482	2	13.0	2	100	0	52	50	0	0	50	1.00
5048546--5048587	12	3.5	12	84	12	50	50	28	14	7	1.69
5050842--5050873	2	16.0	2	100	0	64	50	0	0	50	1.00
5051348--5051380	2	17.0	2	93	6	59	51	0	0	48	1.00
5052422--5052494	26	2.8	25	87	6	94	50	5	6	36	1.52
5053346--5053383	18	2.1	18	85	9	51	5	13	0	81	0.85
5054285--5054352	22	3.0	23	74	18	63	44	0	1	54	1.09
5054293--5054362	24	2.8	25	79	10	63	41	1	1	55	1.17
5055246--5055300	22	2.5	22	82	5	58	38	3	0	58	1.16
5055265--5055305	20	2.1	19	90	4	64	39	0	0	60	0.96
5055266--5055304	9	4.1	9	84	12	51	35	0	0	64	0.94
5055263--5055887	244	2.5	248	87	8	922	34	7	4	53	1.50
5055515--5055582	20	3.3	22	74	10	63	45	0	0	54	0.99
5055682--5055967	157	1.8	157	93	0	500	34	6	5	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5057221--5057259	14	2.9	14	82	17	55	2	5	5	87	0.75
5057707--5058107	194	2.1	195	82	5	472	40	12	13	32	1.82
5071303--5071341	20	2.0	20	89	0	60	30	5	2	61	1.31
5071543--5071572	14	2.1	14	93	0	51	10	10	0	80	0.92
5071584--5071650	35	1.9	35	81	6	82	38	7	13	40	1.73
5072277--5072325	24	2.0	24	84	0	62	40	0	0	59	0.98
5078190--5078264	31	2.4	31	88	0	105	54	9	9	26	1.62
5086211--5086239	2	14.5	2	100	0	58	51	0	0	48	1.00
5094245--5094359	55	2.1	54	83	3	142	26	18	13	41	1.88
5094607--5094653	24	2.0	24	83	8	60	42	2	0	55	1.12
5094784--5094819	15	2.4	16	86	13	58	66	13	5	13	1.41
5099502--5100035	295	1.8	293	83	5	720	34	13	15	36	1.86
5099819--5100418	234	2.6	232	82	5	674	38	12	13	35	1.83
5104365--5104391	14	1.9	14	100	0	54	44	0	7	48	1.31
5104633--5105054	64	6.6	62	77	7	330	34	14	12	37	1.85
5104661--5105054	127	3.1	125	78	7	355	34	14	12	37	1.85
5104644--5105054	191	2.1	190	80	5	461	34	14	12	37	1.85
5106038--5106111	34	2.2	34	85	0	94	35	13	5	45	1.66
5112050--5112100	16	3.2	16	97	0	93	33	11	9	45	1.74
5112481--5112535	22	2.5	22	93	0	92	43	10	16	29	1.82
5114364--5114399	17	2.1	17	89	5	54	25	8	8	58	1.55
5118371--5118436	30	2.2	29	79	12	71	51	1	1	45	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5122250--5122283	18	1.9	18	88	5	52	73	0	0	26	0.83
5123389--5123434	21	2.4	19	82	13	51	50	21	0	28	1.49
5123375--5123435	21	2.9	19	70	15	50	50	18	0	31	1.47
5123632--5123662	14	2.3	14	94	5	55	61	0	0	38	0.96
5123696--5123775	42	2.0	38	85	9	106	48	0	1	50	1.08
5129600--5129653	27	2.0	27	82	3	65	62	3	14	18	1.46
5137720--5137746	2	13.5	2	100	0	54	48	0	51	0	1.00
5139029--5139080	24	2.2	24	83	10	63	53	0	0	46	1.00
5139036--5139080	23	1.9	24	86	13	67	55	0	0	44	0.99
5143283--5143388	25	4.5	24	70	13	69	39	2	3	53	1.33
5143295--5143336	13	3.3	13	90	3	59	45	2	2	50	1.27
5143387--5143426	17	2.3	18	86	4	55	0	12	2	85	0.71
5143729--5143778	20	2.5	20	83	0	64	20	0	22	58	1.40
5146418--5146450	2	16.5	2	100	0	66	0	48	0	51	1.00
5147436--5147469	16	2.1	16	94	0	59	44	11	11	32	1.77
5150150--5150180	6	5.3	6	92	7	55	83	0	16	0	0.64
5150143--5150180	11	3.4	11	92	3	58	81	0	18	0	0.69
5168142--5168175	10	3.8	9	85	14	52	0	0	11	88	0.52
5168624--5168710	37	2.4	37	84	5	115	37	27	14	19	1.91
5170907--5171046	53	2.6	53	73	4	138	25	22	15	36	1.93
5181374--5181413	20	2.0	20	85	0	53	27	15	2	55	1.53
5183835--5183904	22	3.0	22	70	11	68	40	7	12	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5192841--5192874	10	3.4	10	87	0	50	70	0	26	2	1.01
5202853--5202939	3	28.0	3	81	6	102	62	2	1	34	1.16
5203576--5203625	16	3.1	16	80	8	57	60	2	0	38	1.09
5204451--5204535	30	2.9	30	78	1	100	48	9	8	34	1.65
5206018--5206232	116	1.9	115	84	4	290	35	20	16	26	1.94
5213433--5213467	15	2.3	15	90	0	52	25	5	25	42	1.77
5217731--5217786	20	2.8	20	84	10	71	19	3	1	75	1.05
5218259--5218289	13	2.4	13	94	0	53	45	3	0	51	1.17
5218952--5218983	2	16.0	2	93	0	55	53	0	0	46	1.00
5220030--5220095	24	2.8	23	72	20	64	34	3	4	57	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133