genome.fa.s645.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  61  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12494283--12494348	32	2.1	32	100	0	132	30	16	12	40	1.85
12495013--12495047	17	2.1	17	94	0	61	40	14	2	42	1.60
12498901--12498948	24	1.9	25	83	8	62	60	2	29	8	1.37
12501036--12501129	30	3.1	30	87	0	134	41	15	1	41	1.55
12502706--12502737	17	1.9	17	93	6	57	50	0	3	46	1.17
12509317--12509584	126	2.1	126	88	0	385	40	14	13	31	1.84
12509387--12509584	64	3.1	63	75	13	217	40	15	12	32	1.84
12509671--12509742	35	2.1	35	86	0	99	34	11	19	34	1.87
12512890--12514118	236	5.2	233	80	4	1216	33	9	11	46	1.72
12512890--12514060	469	2.5	466	82	4	1377	32	9	11	46	1.72
12515449--12515480	17	1.9	16	93	6	55	34	6	21	37	1.79
12525147--12525172	12	2.2	12	100	0	52	69	7	15	7	1.35
12528921--12528954	15	2.3	15	94	0	59	14	0	64	20	1.28
12528920--12529028	51	2.2	50	85	8	141	14	0	61	23	1.33
12531142--12531188	20	2.3	20	92	0	76	25	21	25	27	1.99
12531391--12531466	21	3.6	21	69	13	75	17	22	31	28	1.96
12531820--12531858	20	2.0	20	94	0	69	48	20	2	28	1.62
12531852--12531889	18	2.1	18	95	0	67	36	23	2	36	1.69
12533575--12533757	73	2.5	73	80	7	212	23	24	21	30	1.99
12542877--12542906	6	5.0	6	100	0	60	16	0	50	33	1.46
12544152--12544205	27	2.0	27	100	0	108	18	22	25	33	1.97
12544155--12544219	27	2.4	27	86	0	76	21	24	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12544350--12544392	21	2.0	21	100	0	86	32	9	39	18	1.83
12549613--12549647	9	4.0	9	85	7	54	77	2	0	20	0.90
12551257--12551321	18	3.6	17	80	16	60	69	1	9	20	1.24
12551269--12551327	18	3.2	19	79	15	61	69	0	11	18	1.18
12551288--12551327	18	2.2	18	91	8	64	65	0	17	17	1.28
12552168--12552270	3	34.3	3	77	9	95	59	3	2	33	1.31
12553377--12553601	54	4.1	54	71	14	170	36	14	25	23	1.93
12552942--12553551	227	2.7	228	78	4	593	37	15	25	21	1.93
12552663--12553575	114	8.0	114	74	6	476	37	15	24	22	1.93
12552882--12553553	341	2.0	342	79	2	742	37	15	25	21	1.93
12554342--12554398	1	57.0	1	75	0	51	0	1	10	87	0.61
12554349--12554401	6	9.2	6	82	13	67	0	0	13	86	0.56
12554342--12554398	18	3.3	17	81	11	71	0	1	10	87	0.61
12554342--12554401	30	2.0	29	90	3	93	0	1	11	86	0.64
12554349--12554398	24	2.1	25	89	10	79	0	0	12	88	0.53
12563446--12563535	18	5.2	17	71	21	62	74	3	6	15	1.16
12563441--12563510	31	2.3	31	83	11	83	77	4	2	15	1.05
12563422--12563482	15	3.9	15	69	23	54	75	6	1	16	1.09
12563424--12563510	16	5.6	15	72	15	54	75	5	2	16	1.09
12563485--12563535	18	2.8	18	88	5	68	72	0	9	17	1.11
12564366--12564494	3	41.7	3	75	10	82	58	4	3	32	1.36
12564431--12564494	16	4.2	16	86	5	80	57	0	4	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12564664--12564756	36	2.6	36	82	14	120	15	19	17	48	1.81
12564818--12564921	36	2.9	36	73	5	106	16	17	16	50	1.79
12564818--12564956	71	2.0	70	81	11	167	16	15	16	51	1.77
12564947--12565024	35	2.2	35	84	4	95	15	23	17	43	1.87
12565002--12565080	35	2.2	36	84	2	106	11	16	16	55	1.68
12565164--12565328	35	4.7	34	74	15	133	13	25	16	44	1.85
12565158--12565345	71	2.7	70	83	6	220	14	23	17	44	1.85
12564914--12565361	211	2.1	212	78	6	460	15	20	15	47	1.82
12565164--12565373	106	2.0	106	80	9	241	16	23	15	44	1.86
12565069--12565362	35	8.3	35	67	14	108	16	22	14	46	1.83
12567592--12567624	9	3.7	9	95	0	57	66	6	0	27	1.15
12570413--12570517	19	5.6	19	75	9	83	18	0	39	42	1.50
12590595--12590957	191	1.9	191	95	0	654	31	22	17	28	1.97
12592330--12592378	16	3.1	16	77	11	64	51	30	6	12	1.64
12594592--12594671	39	2.1	39	95	0	142	25	6	36	32	1.81
12595466--12595509	22	2.0	22	95	0	79	31	11	13	43	1.80
12599431--12599506	39	1.9	39	94	0	134	34	40	3	21	1.71
12611477--12611540	34	2.0	33	82	11	80	29	15	9	45	1.78
12613847--12614068	109	2.0	111	92	1	376	35	9	18	36	1.84
12614452--12614609	79	2.0	79	87	0	226	34	6	24	35	1.81
12615079--12615267	24	8.5	24	76	13	165	37	3	17	41	1.65
12615092--12615167	40	1.9	40	86	10	111	34	1	21	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12615147--12615267	45	2.6	47	77	9	122	39	4	14	41	1.65
12615092--12615269	69	2.7	67	82	9	197	38	2	17	41	1.64
12615203--12615281	14	6.2	14	71	21	66	41	5	13	39	1.67
12615329--12615398	23	3.1	22	77	4	68	34	8	18	38	1.81
12615338--12615401	22	2.8	23	78	4	76	32	7	18	40	1.80
12615338--12615442	44	2.4	45	85	4	133	35	7	18	39	1.79
12615356--12615423	23	3.2	21	73	10	66	35	7	14	42	1.74
12615516--12615643	43	2.9	45	75	8	102	38	8	14	39	1.76
12615775--12615887	16	7.0	17	68	9	76	37	11	12	38	1.79
12615823--12615901	32	2.4	34	85	4	99	39	13	8	37	1.77
12615838--12615885	17	2.9	17	75	9	55	39	8	10	41	1.69
12615802--12615948	34	4.4	34	79	6	124	36	14	9	39	1.78
12616036--12616102	35	1.9	35	81	6	82	29	10	7	52	1.63
12616202--12616332	18	7.2	18	72	16	92	28	12	12	46	1.78
12616260--12616354	38	2.5	36	78	8	100	29	11	17	41	1.85
12617730--12617809	38	2.2	36	85	12	103	40	16	12	31	1.85
12618614--12618677	23	2.7	23	77	20	60	32	0	12	54	1.38
12621240--12621270	15	2.1	15	100	0	62	38	0	6	54	1.26
12622294--12622354	20	3.1	19	71	7	50	19	1	29	49	1.58
12623544--12623582	20	1.9	20	89	5	60	74	0	5	20	1.01
12623557--12623680	60	2.1	56	84	10	151	54	3	7	34	1.44
12623557--12623680	58	2.1	57	84	12	155	54	3	7	34	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12627624--12627666	20	2.1	21	91	8	72	76	0	9	13	1.01
12628309--12628343	15	2.2	16	90	5	54	82	0	2	14	0.77
12628315--12628356	19	2.2	20	95	4	77	83	0	4	11	0.79
12628324--12628362	19	2.1	19	90	4	62	84	0	7	7	0.77
12628778--12628835	19	2.9	20	78	17	75	75	1	18	3	1.03
12631292--12631353	14	4.5	14	80	8	74	25	1	17	54	1.52
12636353--12636685	41	8.1	41	74	8	221	31	15	11	41	1.82
12636353--12636685	82	4.1	82	75	7	266	31	15	11	41	1.82
12636385--12636683	123	2.4	122	79	6	334	30	16	11	41	1.83
12636701--12636948	52	4.8	52	81	4	268	30	17	15	36	1.91
12636697--12636948	103	2.4	104	83	0	317	29	17	15	37	1.91
12636911--12636977	31	2.2	31	88	0	98	32	16	14	35	1.90
12637020--12637171	50	3.0	49	73	11	137	28	18	15	37	1.92
12636990--12637170	52	3.6	49	72	14	136	28	18	14	38	1.91
12637123--12637161	21	1.9	20	85	15	53	20	23	17	38	1.93
12637266--12637308	21	2.0	21	86	0	59	20	13	16	48	1.80
12637855--12637892	20	1.9	20	94	0	67	42	5	18	34	1.73
12637857--12637902	20	2.3	20	85	7	58	45	8	15	30	1.76
12638590--12639415	126	6.6	126	77	7	662	35	12	14	37	1.85
12638776--12638985	64	3.3	63	73	9	176	33	9	17	39	1.82
12638590--12639415	253	3.3	247	80	6	874	35	12	14	37	1.85
12639093--12639295	60	3.3	60	74	12	180	33	13	14	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12641600--12641660	20	3.0	20	80	4	70	37	37	1	22	1.65
12641624--12641659	13	2.6	14	86	4	56	41	38	0	19	1.52
12641624--12641660	14	2.7	15	84	16	53	40	40	0	18	1.51
12642082--12642117	9	4.1	9	89	7	56	86	0	13	0	0.58
12642082--12642117	17	2.1	17	94	0	63	86	0	13	0	0.58
12646548--12646612	31	2.1	31	91	2	105	52	3	3	41	1.32
12647813--12647892	33	2.4	33	81	6	90	37	5	11	46	1.62
12652235--12652268	15	2.3	15	89	0	50	41	20	0	38	1.53
12655163--12655201	14	2.8	14	84	0	51	76	0	10	12	1.01
12655162--12655201	21	1.9	21	89	0	62	75	0	10	15	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133