genome.fa.s645.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  79  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15634645--15634686	22	1.9	22	90	0	66	33	0	0	66	0.92
15634643--15634696	29	1.9	27	85	7	72	35	0	0	64	0.94
15641490--15641610	13	9.4	12	74	12	57	20	2	30	46	1.64
15641512--15641628	25	4.5	26	69	11	78	20	1	31	46	1.61
15641530--15641605	7	11.7	7	74	14	56	22	1	31	44	1.61
15641512--15641628	52	2.2	52	80	8	123	20	1	31	46	1.61
15641654--15641743	27	3.4	27	84	6	103	25	4	24	45	1.72
15641653--15641749	13	7.3	14	71	15	64	26	4	23	45	1.71
15641654--15641743	14	6.8	13	68	14	58	25	4	24	45	1.72
15642746--15642770	10	2.5	10	100	0	50	44	0	20	36	1.52
15643043--15643090	24	2.0	24	100	0	96	29	12	16	41	1.85
15646760--15646817	20	2.7	21	77	17	66	37	6	5	50	1.52
15646495--15646905	220	1.9	218	80	7	483	30	10	6	51	1.62
15647437--15647710	127	2.1	128	79	6	286	28	8	5	57	1.51
15656150--15656521	174	2.1	175	85	1	496	46	12	19	20	1.83
15656396--15657164	105	7.4	105	86	3	924	47	13	17	21	1.81
15656432--15657164	211	3.5	209	86	4	960	48	13	16	21	1.81
15656782--15657167	34	11.2	35	68	12	174	50	12	15	21	1.77
15656432--15657153	316	2.3	313	87	2	1018	48	13	16	22	1.81
15657143--15657520	109	3.5	109	86	2	533	45	15	19	18	1.85
15670295--15670346	18	2.8	19	75	21	56	69	3	1	25	1.16
15670996--15671046	21	2.4	21	86	3	66	11	7	9	70	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15671396--15671467	14	4.6	15	74	20	51	6	2	9	80	0.99
15671416--15671474	12	5.4	11	74	13	59	10	0	11	77	0.98
15671415--15671444	13	2.3	13	94	0	51	6	0	10	83	0.81
15671411--15671474	23	3.1	19	78	14	65	9	0	10	79	0.93
15671419--15671479	30	2.0	31	93	6	106	11	0	13	75	1.05
15671434--15671506	38	1.9	37	86	8	103	16	0	9	73	1.07
15671430--15671496	30	2.3	30	84	2	82	16	0	8	74	1.05
15675096--15675128	2	16.5	2	100	0	66	0	51	0	48	1.00
15675128--15675165	2	19.0	2	100	0	76	50	50	0	0	1.00
15678034--15678099	33	2.0	33	90	0	105	27	9	22	40	1.84
15680683--15681183	253	2.0	253	93	0	858	43	16	10	29	1.81
15686644--15687817	161	7.3	160	80	4	1118	42	13	9	33	1.77
15688897--15688932	13	2.8	13	86	0	54	69	5	2	22	1.22
15693174--15693223	26	1.9	26	87	0	73	44	14	12	30	1.81
15693747--15693885	18	8.1	17	73	13	108	41	2	1	55	1.21
15693751--15693896	13	11.8	13	71	20	100	41	2	1	55	1.20
15693789--15693896	36	3.2	36	70	13	95	40	2	0	55	1.21
15693795--15693896	22	4.6	22	75	16	95	42	1	0	54	1.18
15694495--15694542	20	2.4	20	89	0	69	20	12	25	41	1.87
15698762--15698793	13	2.4	13	94	5	55	71	0	18	9	1.12
15710583--15710982	199	2.0	203	84	3	531	43	11	12	33	1.78
15714691--15714887	110	1.8	108	85	2	277	27	9	16	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15716091--15716145	24	2.3	24	100	0	110	18	38	3	40	1.68
15723826--15724252	235	1.8	235	85	3	608	45	12	9	31	1.75
15726046--15726086	12	3.3	12	86	3	55	12	9	12	65	1.46
15727787--15727925	69	2.0	69	94	0	242	27	17	13	41	1.88
15729161--15729207	14	3.4	14	76	5	51	78	0	14	6	0.93
15737210--15737257	17	2.8	18	81	15	57	6	10	8	75	1.20
15738127--15738157	11	2.8	11	90	0	53	19	0	0	80	0.71
15738827--15738981	32	4.8	33	77	7	124	31	18	16	33	1.93
15739216--15739263	22	2.1	23	85	11	64	35	20	14	29	1.93
15739243--15739580	32	10.5	32	71	9	111	31	16	17	34	1.92
15739440--15739525	33	2.6	33	85	3	102	40	15	15	29	1.87
15740454--15740540	13	6.9	12	71	21	63	5	16	0	78	0.94
15740430--15740529	25	4.0	25	74	14	82	7	18	0	75	1.03
15740435--15740535	20	5.2	18	79	12	94	5	17	0	76	0.98
15740435--15740535	39	2.6	39	78	12	109	5	17	0	76	0.98
15740447--15740540	30	3.6	25	72	18	75	6	14	0	78	0.93
15744938--15744987	25	2.0	25	96	0	91	46	22	8	24	1.78
15746920--15746962	13	3.3	13	78	12	52	18	6	25	48	1.73
15746944--15747026	20	4.2	20	75	3	87	22	3	21	51	1.63
15746939--15747005	32	2.1	33	86	13	95	20	2	20	55	1.57
15746962--15747026	27	2.5	28	73	19	68	24	3	21	50	1.63
15749334--15749369	8	4.4	8	86	6	54	25	2	0	72	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15749334--15749369	17	2.2	16	90	5	54	25	2	0	72	0.98
15762033--15762119	42	2.1	42	95	0	156	25	6	29	37	1.82
15766493--15766546	17	3.2	17	75	10	58	53	5	12	27	1.61
15769666--15769756	23	4.0	21	76	18	60	8	16	1	73	1.13
15769685--15769718	8	4.2	8	89	10	52	11	11	0	76	1.02
15769708--15769747	6	7.0	6	81	18	50	12	15	2	70	1.28
15769700--15769757	21	2.7	22	84	10	68	12	15	1	70	1.24
15769680--15769753	29	2.6	28	79	16	80	9	14	1	74	1.13
15776258--15776291	5	6.8	5	86	0	50	23	14	0	61	1.33
15783307--15786129	565	5.0	565	93	1	4806	41	8	9	40	1.69
15785023--15785069	20	2.4	20	85	3	60	27	14	10	46	1.78
15786119--15786178	26	2.6	21	75	22	66	51	10	1	36	1.45
15786117--15786169	26	2.0	26	96	0	97	56	11	0	32	1.35
15786577--15786615	18	2.2	18	85	0	51	20	0	10	69	1.17
15786669--15786702	3	11.3	3	100	0	68	35	0	0	64	0.94
15787371--15787421	23	2.2	24	82	3	59	56	5	19	17	1.61
15788476--15788526	26	2.0	26	84	7	68	21	3	0	74	0.98
15792846--15792890	21	2.0	22	91	8	74	77	0	11	11	0.99
15792846--15792887	15	2.8	16	78	10	52	76	0	11	11	1.03
15794296--15794386	45	2.0	46	89	4	141	31	7	15	45	1.74
15794728--15794809	33	2.5	33	82	6	85	36	13	10	39	1.80
15794737--15794861	17	7.6	17	70	8	80	37	13	9	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15794921--15794983	22	2.8	23	73	4	58	36	14	14	34	1.86
15796801--15796859	26	2.4	24	74	23	59	61	1	1	35	1.16
15797428--15797577	55	2.7	56	83	6	189	42	10	15	32	1.80
15799304--15799340	12	3.1	12	88	11	58	29	0	0	70	0.88
15801948--15802298	117	3.0	117	86	7	487	34	12	7	45	1.71
15801948--15802292	177	2.0	176	93	4	588	34	12	7	44	1.71
15801948--15802300	60	6.0	59	85	9	470	33	12	7	45	1.71
15802333--15802422	16	5.2	16	71	24	69	75	2	2	20	1.01
15802304--15802423	54	2.2	53	79	13	131	74	1	4	20	1.07
15802914--15802961	25	1.9	25	83	8	62	43	18	6	31	1.75
15808884--15809207	119	2.8	116	87	8	439	35	12	8	43	1.73
15809841--15809938	14	6.9	14	80	15	85	7	0	10	82	0.84
15809871--15809946	1	76.0	1	78	0	71	0	0	11	88	0.52
15809871--15809944	7	10.7	7	90	9	109	0	0	12	87	0.53
15809841--15809946	29	3.8	28	84	8	101	6	0	9	83	0.79
15809871--15809947	22	3.6	22	85	7	113	0	0	12	87	0.56
15809871--15809946	15	5.1	15	87	7	93	0	0	11	88	0.52
15809955--15810781	42	19.9	42	89	6	1111	36	22	17	23	1.94
15809955--15810781	83	10.0	83	89	5	1103	36	22	17	23	1.94
15812021--15812080	20	3.1	19	75	24	63	5	16	0	78	0.92
15812039--15812071	10	3.2	10	95	4	57	0	12	0	87	0.53
15812378--15812427	1	50.0	1	91	0	82	0	4	0	96	0.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15815843--15816247	61	6.9	58	85	8	534	34	12	7	45	1.72
15815843--15816247	116	3.4	116	88	6	586	34	12	7	45	1.72
15815843--15816237	178	2.2	175	92	4	643	34	13	7	45	1.72
15816265--15816403	10	13.9	10	67	21	69	75	1	4	18	1.04
15816263--15816310	26	1.9	24	87	8	69	79	0	6	14	0.92
15816303--15816354	21	2.4	22	81	18	65	78	0	7	13	0.94
15816264--15816407	36	3.9	35	73	12	103	76	1	4	18	1.02
15816288--15816407	10	11.4	10	72	10	87	76	1	3	18	1.00
15816900--15816947	25	1.9	25	83	8	62	43	18	6	31	1.75
15819299--15819333	12	2.9	12	86	0	52	45	2	22	28	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133