genome.fa.s645.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  106  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20669944--20670042	46	2.1	47	88	3	148	37	0	4	58	1.17
20669929--20670064	18	7.3	20	74	14	69	30	0	2	66	1.07
20670881--20670998	20	6.4	19	72	15	70	18	1	5	74	1.09
20670900--20670983	28	3.2	26	79	15	91	17	0	5	76	0.99
20670916--20670964	19	2.4	19	86	10	62	16	0	8	75	1.03
20670898--20670996	22	4.4	22	76	14	87	18	0	5	76	0.96
20670898--20670996	27	3.7	25	80	12	108	18	0	5	76	0.96
20670898--20670991	7	15.2	6	71	20	61	18	0	5	76	0.97
20671322--20671407	37	2.3	37	93	0	145	43	17	11	27	1.84
20675029--20675067	21	1.9	20	89	5	60	79	2	17	0	0.84
20676267--20676429	61	2.7	61	79	1	148	21	24	11	42	1.86
20676628--20676660	17	1.9	17	93	0	57	21	21	9	48	1.77
20676724--20676768	17	2.6	17	82	0	54	22	22	8	46	1.79
20676853--20676912	23	2.6	23	97	0	111	28	13	13	45	1.81
20677165--20677539	55	6.9	55	77	3	310	24	25	11	38	1.89
20677176--20677539	110	3.3	109	77	4	367	24	24	11	39	1.88
20677857--20677962	5	21.2	5	78	7	90	34	1	3	59	1.26
20677856--20677915	28	2.1	28	87	0	84	38	0	3	58	1.15
20678756--20678858	19	5.5	19	76	14	90	18	1	4	74	1.09
20678764--20678834	25	3.0	23	81	12	81	18	0	5	76	0.98
20678822--20678886	27	2.3	26	82	17	78	27	4	3	64	1.28
20680062--20680094	13	2.5	13	90	9	50	51	6	3	39	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20680615--20680660	23	2.0	23	87	4	67	69	2	2	26	1.11
20680646--20680741	6	15.7	6	75	19	56	77	3	2	17	1.00
20680695--20680741	24	1.9	25	86	4	69	82	2	2	12	0.84
20683661--20683707	22	2.1	22	88	0	67	21	0	14	63	1.30
20690348--20690436	30	2.9	30	76	6	90	46	0	10	43	1.37
20692334--20692378	6	7.5	6	82	7	56	15	11	4	68	1.34
20692507--20692531	13	1.9	13	100	0	50	56	0	8	36	1.29
20693269--20693298	15	2.0	15	93	0	51	76	3	0	20	0.92
20693564--20693612	3	16.3	3	91	0	62	67	8	0	24	1.18
20693611--20693635	3	8.3	3	100	0	50	32	0	0	68	0.90
20694204--20694242	3	12.7	3	94	5	69	33	2	0	64	1.08
20695208--20695244	2	18.5	2	100	0	74	48	0	0	51	1.00
20696728--20696758	16	1.9	16	93	0	53	51	16	3	29	1.59
20696724--20696762	20	2.0	20	100	0	78	51	15	2	30	1.57
20696721--20696766	24	1.9	24	95	0	83	50	15	2	32	1.56
20698305--20698345	18	2.3	18	91	8	66	26	4	0	68	1.10
20698498--20698546	3	16.3	3	100	0	98	32	0	0	67	0.91
20699379--20699431	9	6.0	9	78	10	56	18	1	5	73	1.12
20703348--20703395	22	2.4	20	78	18	55	35	8	14	41	1.76
20704083--20704116	18	1.9	18	94	5	61	91	0	8	0	0.43
20705594--20705693	3	34.3	3	86	6	134	31	3	1	65	1.15
20706526--20706578	19	2.5	20	88	11	72	20	1	0	77	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20706526--20706583	21	2.8	21	82	12	59	20	1	1	75	0.97
20707553--20707598	18	2.6	17	83	6	65	73	2	0	23	0.94
20707827--20707877	2	25.5	2	95	0	93	0	49	0	50	1.00
20708514--20708581	10	6.9	10	78	5	50	82	0	14	2	0.79
20708807--20709070	50	5.2	50	76	7	203	40	17	10	32	1.83
20709940--20709977	19	2.1	18	90	5	58	2	10	0	86	0.66
20720140--20720173	17	2.0	17	88	0	50	14	8	8	67	1.41
20721266--20721306	16	2.4	16	88	8	55	24	4	0	70	1.06
20721522--20721564	19	2.3	19	92	4	70	67	0	0	32	0.91
20722417--20722468	16	3.4	16	80	15	65	82	0	15	1	0.75
20722417--20722467	15	3.4	15	82	12	61	82	0	15	1	0.76
20722417--20722470	19	2.9	18	84	10	65	83	0	14	1	0.73
20722428--20722474	17	3.0	16	78	9	53	80	0	14	4	0.85
20723333--20723369	5	7.4	5	100	0	74	18	0	0	81	0.70
20725290--20725334	22	2.0	22	83	12	56	46	0	0	53	1.00
20725287--20725361	24	3.2	25	71	22	63	49	0	1	49	1.09
20725287--20725363	23	3.5	22	74	22	72	48	0	1	50	1.09
20728125--20728174	18	2.5	20	78	9	50	44	6	2	48	1.39
20728605--20728645	18	2.3	18	86	0	55	58	0	0	41	0.98
20733752--20733795	22	2.0	23	82	13	56	61	4	2	31	1.28
20735598--20735627	10	3.0	10	95	0	51	46	0	0	53	1.00
20735646--20735686	18	2.3	18	86	0	55	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20737245--20737283	13	3.0	13	92	0	60	25	17	7	48	1.74
20748310--20748340	14	2.1	15	94	5	55	61	0	38	0	0.96
20752802--20752863	21	3.0	21	88	2	90	29	22	4	43	1.74
20752953--20752996	21	2.1	21	86	0	61	34	20	4	40	1.73
20756760--20756816	29	2.0	29	96	0	105	31	28	10	29	1.90
20758206--20758272	29	2.3	29	82	5	73	46	1	0	52	1.09
20758225--20758283	29	2.0	29	80	6	66	38	1	0	59	1.08
20758227--20758343	30	4.0	29	74	12	96	41	2	2	53	1.28
20758265--20758367	30	3.5	29	77	9	84	43	3	3	48	1.39
20766329--20766386	19	2.8	21	82	12	75	63	6	3	25	1.35
20766856--20766881	2	13.0	2	100	0	52	50	0	0	50	1.00
20768505--20768530	2	13.0	2	100	0	52	50	0	0	50	1.00
20773280--20773729	243	1.9	241	87	3	672	29	18	20	31	1.96
20777804--20777833	2	15.0	2	100	0	60	50	0	0	50	1.00
20781058--20781133	27	2.5	31	75	18	88	53	2	0	43	1.14
20782374--20782415	6	7.0	6	100	0	84	33	50	0	16	1.46
20791892--20791948	29	1.9	30	92	3	98	43	0	1	54	1.10
20791957--20792027	33	2.3	31	90	7	108	67	0	0	32	0.91
20792505--20792559	17	3.3	16	82	7	74	65	0	1	32	1.03
20792503--20792562	18	3.5	17	76	15	70	63	0	1	35	1.05
20792520--20792591	25	2.8	25	79	10	83	61	0	5	33	1.19
20792837--20792884	19	2.5	20	89	3	71	25	0	6	68	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20793243--20793306	32	2.0	32	87	6	94	28	12	10	48	1.75
20804087--20804127	11	3.5	12	80	12	50	0	12	2	85	0.70
20804085--20804127	23	1.9	23	85	4	61	0	11	2	86	0.67
20804544--20804620	38	2.0	38	100	0	154	40	20	5	33	1.75
20805792--20805836	16	2.7	17	82	6	56	31	6	0	62	1.21
20806336--20806378	13	3.5	12	84	12	52	16	2	4	76	1.05
20806321--20806384	17	3.8	17	74	15	51	17	4	3	75	1.11
20807501--20807554	21	2.7	20	82	5	72	50	3	7	38	1.48
20807616--20807669	20	2.7	20	76	0	63	50	12	9	27	1.71
20808095--20808204	55	2.0	55	89	0	166	28	26	12	32	1.93
20810510--20810552	3	14.3	3	90	0	59	32	30	0	37	1.58
20814186--20814224	16	2.4	16	86	4	51	23	10	15	51	1.73
20814659--20815282	334	1.9	335	89	4	972	48	11	4	35	1.59
20815356--20815386	16	1.9	16	93	0	53	74	6	0	19	1.03
20815492--20815588	33	3.1	32	74	17	96	57	20	0	21	1.41
20815492--20815605	60	1.9	59	82	7	140	58	19	0	21	1.39
20817675--20817764	31	2.9	31	78	6	76	32	20	15	32	1.93
20817709--20817768	31	1.9	31	86	6	86	31	20	18	30	1.96
20817789--20817897	31	3.6	30	82	8	98	35	11	14	37	1.83
20817816--20817908	31	3.0	30	84	1	114	33	13	15	37	1.87
20821978--20822041	26	2.5	26	78	14	62	45	9	6	39	1.62
20823019--20823075	6	9.7	6	74	11	55	80	1	1	15	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20823019--20823068	11	4.5	11	74	16	50	80	2	2	16	0.91
20823020--20823075	25	2.4	23	82	8	69	82	1	1	14	0.84
20823283--20823335	9	5.7	9	77	16	54	1	11	3	83	0.87
20823280--20823330	19	2.6	19	87	6	66	1	13	1	82	0.85
20823404--20823584	41	4.5	41	81	6	226	45	17	14	22	1.84
20824146--20824210	22	3.0	22	88	4	96	41	7	9	41	1.65
20824116--20824178	33	1.9	33	87	3	92	47	11	9	31	1.71
20824145--20824210	21	3.1	21	89	4	96	40	7	10	40	1.68
20825413--20825440	11	2.5	11	100	0	56	0	10	7	82	0.85
20829569--20829867	164	1.8	165	85	3	424	38	14	9	38	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133