genome.fa.s645.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  32  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7334864--7335238	103	3.7	103	77	6	352	29	16	21	32	1.95
7335740--7335793	24	2.2	24	86	0	72	20	16	22	40	1.91
7335590--7335778	85	2.2	85	75	7	186	24	10	20	43	1.83
7335747--7335801	24	2.3	24	83	0	74	21	20	23	34	1.97
7335948--7336178	85	2.7	85	82	3	252	26	17	19	36	1.94
7336156--7336220	24	2.7	24	78	7	69	15	15	26	43	1.86
7336512--7336583	37	1.9	37	94	0	126	18	9	23	48	1.77
7336987--7337166	85	2.1	85	79	6	195	21	12	23	42	1.86
7338670--7338700	3	10.3	3	100	0	62	32	0	0	67	0.91
7339167--7339196	15	1.9	16	93	6	53	60	0	0	40	0.97
7340596--7340632	17	2.2	17	100	0	74	32	0	5	62	1.18
7342499--7342542	20	2.1	21	88	12	65	68	0	0	31	0.90
7342508--7342549	18	2.4	18	92	4	68	69	0	0	30	0.89
7342520--7342572	27	2.0	27	89	7	83	58	0	1	39	1.09
7344098--7344127	3	10.0	3	92	0	51	36	0	63	0	0.95
7348760--7348800	21	2.0	21	100	0	82	14	19	17	48	1.81
7360424--7360467	20	2.2	19	84	8	52	47	0	2	50	1.13
7360482--7360528	25	2.0	24	87	8	69	53	0	0	46	1.00
7361563--7361590	2	14.0	2	100	0	56	50	0	0	50	1.00
7363740--7363765	13	2.0	13	100	0	52	69	0	0	30	0.89
7366283--7366308	2	13.0	2	100	0	52	50	0	0	50	1.00
7369815--7370030	109	2.0	109	93	0	369	18	13	17	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7373098--7373127	2	15.0	2	92	0	51	50	3	0	46	1.18
7374089--7374173	43	2.0	42	93	4	145	17	23	0	58	1.38
7375169--7375361	61	3.1	58	70	16	140	36	13	11	37	1.82
7375197--7375470	62	4.4	60	70	13	171	34	13	12	39	1.82
7378146--7378179	3	11.3	3	87	12	52	67	0	0	32	0.91
7378589--7378625	20	2.0	20	89	10	60	78	10	8	2	1.06
7379693--7379854	16	10.2	16	79	6	159	48	32	1	16	1.57
7379783--7379875	30	3.1	28	83	9	96	50	32	2	15	1.55
7379822--7379928	51	2.1	50	84	6	135	50	32	0	16	1.46
7379885--7379915	16	1.9	16	93	0	53	45	35	0	19	1.51
7381781--7381832	19	2.9	18	80	5	61	82	15	0	1	0.75
7383286--7383380	16	5.9	15	72	14	66	45	29	3	22	1.68
7383285--7383375	32	2.8	31	81	8	101	48	28	2	20	1.62
7385064--7385093	15	1.9	16	93	6	53	66	16	0	16	1.25
7387449--7387497	16	2.8	18	75	12	57	51	2	0	46	1.12
7395155--7395185	2	15.5	2	100	0	62	0	51	0	48	1.00
7395998--7396044	22	2.1	22	84	0	58	59	0	0	40	0.97
7400648--7400705	13	4.6	13	73	18	52	46	27	3	22	1.68
7403558--7403620	12	5.7	10	78	14	54	15	0	6	77	0.96
7404371--7404414	3	14.7	3	90	0	70	34	0	2	63	1.07
7404492--7404803	59	5.2	59	75	17	273	48	6	8	35	1.60
7404492--7404803	58	5.2	58	76	13	263	48	6	8	35	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7404510--7404803	125	2.4	129	78	12	316	47	6	9	36	1.63
7410388--7410420	16	2.1	16	88	11	50	57	6	30	6	1.47
7416047--7416321	41	6.4	43	84	6	337	25	12	19	43	1.85
7416052--7416337	126	2.2	126	82	6	328	25	12	19	42	1.86
7416516--7416548	11	3.2	11	87	12	52	18	9	0	72	1.10
7417473--7417788	59	5.2	59	80	11	294	50	5	8	34	1.56
7417488--7417727	129	1.9	128	86	2	347	48	5	10	35	1.61
7420758--7420812	27	2.0	27	93	6	94	25	14	16	43	1.86
7422606--7422671	27	2.4	29	73	14	68	65	12	1	21	1.34
7422211--7423225	514	2.0	515	87	2	1495	52	13	3	31	1.56
7423111--7423159	20	2.4	20	86	10	64	63	14	0	22	1.30
7423106--7423163	20	2.7	23	74	20	61	65	12	0	22	1.25
7423197--7423254	28	2.1	28	84	6	75	62	18	0	18	1.34
7423212--7423343	56	2.3	57	80	15	164	57	17	3	21	1.53
7424780--7424816	3	12.3	3	100	0	74	64	0	0	35	0.94
7431046--7431076	16	1.9	16	93	0	53	29	12	19	38	1.89
7434476--7434530	6	9.2	6	85	0	74	14	67	3	14	1.37
7434716--7434761	12	3.8	12	85	0	56	19	65	8	6	1.43
7441077--7441106	12	2.5	12	94	0	51	0	13	0	86	0.57
7444247--7444288	21	2.0	21	85	4	57	19	4	0	76	0.96
7444722--7444771	23	2.2	24	82	13	70	30	0	0	70	0.88
7444719--7444757	15	2.5	16	91	4	62	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7444983--7445105	60	2.0	60	93	0	210	36	21	17	25	1.94
7447134--7447196	25	2.5	24	82	7	72	28	6	12	52	1.64
7447189--7447218	13	2.2	14	94	5	53	23	3	6	66	1.30
7447186--7447229	23	2.0	23	86	13	65	25	2	9	63	1.35
7447848--7447942	46	2.1	46	93	0	163	22	10	11	55	1.65
7452261--7452462	22	9.2	22	74	2	127	37	12	6	43	1.69
7452358--7452640	66	4.2	66	68	14	155	38	9	6	45	1.62
7452542--7452635	22	4.3	22	77	0	89	38	9	5	46	1.59
7452542--7452662	44	2.8	44	77	7	120	38	9	4	47	1.59
7452424--7452637	118	1.8	118	81	8	265	38	8	6	46	1.60
7452709--7452807	43	2.3	44	79	8	112	35	10	5	49	1.58
7452666--7452807	22	6.5	22	70	12	87	35	9	4	50	1.55
7452855--7452924	22	3.1	22	77	2	68	37	12	5	44	1.67
7452827--7452924	44	2.2	44	83	7	119	33	11	6	48	1.63
7452881--7453006	68	1.9	65	83	8	164	37	9	3	49	1.54
7452947--7453003	22	2.6	22	86	2	80	38	8	3	49	1.51
7453335--7453493	22	7.2	22	67	8	65	40	10	8	40	1.70
7455451--7455498	16	2.8	18	79	20	59	62	0	37	0	0.95
7459227--7459270	18	2.5	17	82	10	54	68	6	9	15	1.38
7469933--7470008	30	2.5	30	82	2	80	71	0	22	6	1.09
7470003--7470060	29	2.0	30	86	10	84	77	0	12	10	0.99
7470005--7470060	15	3.8	15	79	9	62	76	0	12	10	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7470721--7470915	79	2.5	79	81	3	212	33	9	24	32	1.88
7470881--7470964	42	2.0	42	92	0	141	23	8	26	41	1.82
7471439--7471602	21	7.7	21	72	18	108	35	10	14	38	1.82
7471414--7471701	46	6.4	46	74	13	267	36	10	13	39	1.80
7471405--7471530	25	5.5	22	75	12	119	36	9	15	38	1.80
7471446--7471615	83	2.1	81	91	5	272	34	11	13	40	1.81
7471529--7471700	21	7.5	21	71	19	103	35	11	12	40	1.79
7471515--7471700	95	2.0	95	93	0	318	33	11	12	41	1.79
7472155--7472235	43	1.9	42	82	12	103	28	11	16	44	1.81
7473825--7474042	117	1.9	115	84	6	289	55	7	12	24	1.62
7474836--7475191	144	2.5	144	81	3	421	40	12	15	31	1.84
7475343--7475384	20	2.2	20	91	4	68	30	9	7	52	1.61
7476909--7477015	13	8.4	12	69	18	65	22	2	1	72	1.07
7476915--7476966	7	7.0	7	81	14	52	17	1	3	76	1.02
7476958--7476996	19	2.1	18	90	4	60	33	2	0	64	1.08
7476950--7476997	15	3.4	15	78	18	50	31	2	0	66	1.03
7477073--7477124	22	2.3	22	83	3	68	32	7	1	57	1.38
7477043--7477107	32	2.0	32	88	5	96	32	6	0	61	1.21
7478015--7478075	5	11.4	5	80	13	68	16	3	3	77	1.04
7478009--7478065	6	10.0	6	81	9	50	17	5	1	75	1.07
7478009--7478075	16	4.1	16	81	9	73	16	4	2	76	1.08
7478105--7478206	30	3.4	29	65	15	73	43	4	12	39	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7478094--7478362	59	4.6	59	82	8	311	43	5	13	38	1.66
7478093--7478371	117	2.4	118	85	4	370	42	5	12	39	1.66
7478186--7478223	16	2.4	16	82	4	51	42	5	2	50	1.39
7478428--7478466	16	2.4	16	87	8	53	0	10	2	87	0.65
7478428--7478466	17	2.4	17	87	12	55	0	10	2	87	0.65
7482139--7482166	3	9.3	3	100	0	56	32	32	0	35	1.58
7488318--7488344	2	13.5	2	100	0	54	51	0	0	48	1.00
7501636--7501754	18	6.6	18	75	13	111	55	1	1	41	1.20
7501636--7501682	22	2.1	22	96	0	85	61	0	0	38	0.96
7501657--7501769	36	3.2	35	80	8	122	56	1	2	38	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133