genome.fa.s645.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  104  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20336263--20336399	68	2.0	67	81	8	161	18	7	2	70	1.23
20336356--20336412	20	2.9	18	82	15	60	24	3	1	70	1.13
20336265--20336412	69	2.2	69	79	10	162	19	6	2	71	1.19
20337400--20337511	32	3.5	31	76	7	109	47	9	1	41	1.47
20337979--20338052	31	2.4	31	82	6	87	41	2	6	48	1.44
20337998--20338073	31	2.5	31	76	8	75	38	5	6	50	1.51
20338386--20338427	20	2.1	20	86	0	57	42	0	9	47	1.36
20338723--20338786	27	2.3	28	78	7	69	53	3	7	35	1.46
20348697--20348742	24	1.9	24	82	8	58	56	2	2	39	1.24
20349473--20349540	25	2.9	23	78	8	73	47	11	8	32	1.71
20349473--20349529	23	2.4	23	85	5	69	42	12	10	35	1.77
20349557--20349596	20	2.0	20	85	0	53	65	20	2	12	1.38
20350051--20350075	13	1.9	13	100	0	50	76	0	0	24	0.80
20350321--20350371	13	3.8	13	78	19	52	80	0	9	9	0.91
20350326--20350372	14	3.4	14	83	16	55	80	0	10	8	0.89
20352909--20353875	481	2.0	482	96	0	1776	37	11	18	32	1.86
20357037--20357070	3	11.3	3	87	0	50	29	0	5	64	1.17
20370013--20370047	17	2.1	17	89	5	54	54	8	0	37	1.31
20376980--20377055	39	1.9	39	97	0	143	25	10	6	57	1.56
20380152--20380181	15	2.0	15	100	0	60	20	6	13	60	1.55
20380304--20380350	24	2.0	24	83	8	60	51	0	6	42	1.27
20380629--20380755	56	2.3	55	88	1	191	43	13	16	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20380453--20380728	105	2.6	105	74	10	256	44	11	16	27	1.83
20380461--20380860	160	2.5	160	78	8	361	44	13	15	27	1.82
20380632--20380783	55	2.7	55	85	3	162	44	11	15	28	1.82
20394029--20394088	29	2.0	30	87	3	86	45	5	25	25	1.73
20399832--20399880	15	3.3	14	78	13	53	22	2	0	75	0.90
20399831--20399880	7	6.5	8	84	11	61	22	2	0	76	0.89
20399830--20399889	31	1.9	31	86	6	86	21	1	1	75	0.99
20399831--20399880	17	3.3	15	83	10	66	22	2	0	76	0.89
20399828--20399889	14	4.3	14	79	16	65	20	1	1	75	0.97
20399839--20399895	24	2.4	23	80	8	60	22	1	1	73	1.02
20399839--20399906	17	4.2	16	77	7	57	25	1	1	72	1.02
20400351--20400397	20	2.3	21	82	14	62	46	0	0	53	1.00
20401399--20401481	6	13.7	6	70	20	57	7	15	0	77	0.98
20404976--20405035	20	3.2	20	66	22	58	48	10	13	28	1.74
20405280--20405311	10	3.2	10	100	0	64	0	9	0	90	0.45
20415247--20415283	18	2.2	18	85	9	51	27	0	2	70	1.01
20424751--20424795	16	2.8	15	80	12	54	75	2	0	22	0.91
20447595--20447690	30	3.2	30	76	2	104	47	1	10	40	1.45
20450544--20450580	8	4.4	8	93	6	56	48	0	0	51	1.00
20453605--20453635	2	15.5	2	100	0	62	48	0	0	51	1.00
20454893--20454919	12	2.2	12	100	0	54	40	0	7	51	1.30
20455445--20455531	3	30.7	3	74	11	58	29	3	4	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20456370--20456444	22	3.4	22	78	12	73	21	1	1	76	0.94
20456379--20456428	23	2.2	23	85	7	66	20	0	2	78	0.86
20456364--20456412	17	3.0	15	78	18	53	12	2	2	83	0.82
20462089--20462305	120	1.8	120	84	4	303	20	20	14	44	1.86
20463729--20463791	23	2.7	23	81	13	85	22	0	3	74	0.96
20463734--20463808	33	2.3	33	80	15	84	24	0	2	73	0.96
20463867--20463896	13	2.4	13	94	5	53	86	0	0	13	0.57
20467252--20467289	18	2.1	18	95	0	67	39	7	5	47	1.55
20467099--20467450	179	2.0	179	82	5	426	42	13	7	35	1.74
20467278--20469104	161	11.4	162	78	5	1417	42	14	8	33	1.77
20475949--20476013	34	1.9	34	87	6	96	33	29	12	24	1.92
20478027--20478092	32	2.2	29	82	12	73	43	18	15	22	1.87
20482232--20482267	18	1.9	18	88	5	54	61	2	0	36	1.11
20483281--20483314	18	2.0	16	88	11	50	47	5	5	41	1.52
20485038--20485135	50	1.9	50	87	6	144	50	16	8	25	1.72
20485121--20485367	38	6.4	38	80	10	245	43	21	12	22	1.86
20485148--20485366	77	2.9	77	83	4	291	43	21	12	21	1.86
20485153--20485366	115	1.9	114	86	4	306	43	21	13	21	1.86
20499145--20499206	27	2.4	26	78	13	74	53	0	1	45	1.10
20499795--20499832	19	2.0	19	94	0	67	44	5	18	31	1.72
20504422--20504458	13	2.9	13	84	15	51	86	10	0	2	0.67
20504407--20504459	27	1.9	27	88	11	81	81	11	1	5	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20510364--20510696	115	3.0	113	76	9	281	48	9	9	32	1.67
20510391--20510758	113	3.2	111	76	10	350	48	8	9	33	1.66
20518918--20519059	34	4.2	34	74	1	106	38	12	11	38	1.79
20520569--20520619	19	2.7	19	96	0	93	47	31	7	13	1.72
20527398--20527455	3	20.0	3	78	7	57	68	1	1	27	1.08
20528409--20528457	15	3.3	15	85	2	64	81	0	18	0	0.69
20528418--20528453	4	9.8	4	82	17	51	80	0	19	0	0.71
20528405--20528465	11	5.7	11	79	11	65	80	0	18	1	0.80
20528404--20528476	22	3.5	21	81	17	66	82	1	15	1	0.81
20528405--20528474	15	4.9	14	78	14	56	81	1	15	1	0.84
20528403--20528456	7	7.7	7	87	6	74	81	0	18	0	0.69
20528683--20529015	49	6.8	49	79	4	350	36	22	12	28	1.91
20528683--20529016	145	2.3	146	82	5	397	36	22	12	28	1.91
20528683--20529016	96	3.4	96	85	4	418	36	22	12	28	1.91
20532346--20532395	15	3.3	15	73	21	50	76	0	12	12	1.04
20532346--20532407	29	2.1	31	82	11	76	77	1	9	11	1.06
20532449--20532508	8	7.2	8	81	9	50	81	5	1	11	0.91
20532446--20532493	12	3.9	12	83	8	53	79	4	2	14	0.98
20533388--20533452	32	2.1	31	85	8	87	64	3	9	23	1.37
20533448--20533495	13	3.7	13	83	8	53	79	2	0	18	0.84
20533444--20533488	16	2.7	16	86	6	54	80	2	0	17	0.82
20533483--20533525	23	1.9	22	85	4	59	60	4	0	34	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20533479--20533527	15	3.2	15	78	21	57	61	4	0	34	1.15
20533562--20533610	12	4.0	12	78	5	53	63	6	0	30	1.19
20533788--20533860	24	3.0	24	84	9	94	4	1	8	86	0.75
20533791--20533860	16	4.3	16	85	8	79	2	1	8	87	0.71
20533814--20533860	8	5.4	9	90	10	64	0	0	10	89	0.49
20533798--20533853	1	56.0	1	81	0	67	1	0	7	91	0.50
20533798--20533852	8	6.9	8	87	6	76	1	0	7	90	0.51
20533868--20534288	83	5.1	83	89	5	604	37	22	16	23	1.93
20533868--20534288	41	10.1	42	89	5	608	37	22	16	23	1.93
20533868--20534288	125	3.4	125	90	4	624	37	22	16	23	1.93
20535530--20535576	19	2.5	19	89	0	76	4	12	0	82	0.80
20535539--20535570	8	3.9	8	95	4	55	0	12	0	87	0.54
20535566--20535596	13	2.4	13	94	0	53	9	16	0	74	1.07
20535530--20535586	19	3.1	17	76	16	51	5	12	0	82	0.82
20539406--20539792	180	2.2	175	91	5	613	35	13	7	43	1.72
20539406--20539809	57	6.9	57	88	5	576	34	12	7	45	1.70
20539809--20539889	26	3.1	24	74	22	67	75	2	8	13	1.14
20539928--20539982	9	6.2	9	79	8	51	83	1	3	10	0.84
20539932--20539974	12	3.5	13	78	9	54	83	2	4	9	0.87
20539928--20539982	22	2.5	22	80	14	69	83	1	3	10	0.84
20540858--20540919	33	1.9	32	83	9	81	64	1	8	25	1.30
20540913--20540973	16	3.6	16	80	17	61	72	3	0	24	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20540955--20541095	8	18.2	8	69	18	52	63	5	0	31	1.18
20540930--20540994	19	4.1	16	77	20	57	67	1	0	30	1.00
20540946--20540996	19	2.9	17	83	16	61	62	1	0	35	1.06
20540929--20541002	13	4.9	16	75	21	56	66	2	0	31	1.06
20540929--20541034	30	3.8	30	75	14	84	66	3	0	30	1.10
20548407--20549295	314	2.8	311	82	6	992	34	13	10	41	1.78
20550472--20550543	28	2.6	28	81	0	90	27	4	22	45	1.70
20553800--20553997	61	3.2	61	71	10	159	33	13	14	38	1.86
20553800--20554064	123	2.1	124	82	6	313	32	14	14	38	1.86
20559344--20559418	25	3.1	22	75	20	78	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133