genome.fa.s645.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  53  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11031210--11031268	31	1.9	31	89	0	91	44	20	0	35	1.52
11031241--11031292	19	2.6	19	85	14	70	44	25	1	28	1.65
11031344--11031386	19	2.2	20	80	19	56	74	0	6	18	1.04
11034345--11034399	27	2.0	27	100	0	110	41	7	14	36	1.74
11039156--11039211	10	6.1	10	68	19	50	50	0	0	50	1.00
11042114--11042222	50	2.2	48	81	7	130	44	16	8	31	1.77
11042785--11042817	17	1.9	17	88	11	50	27	0	6	66	1.15
11044531--11044560	5	6.0	5	92	0	51	76	0	0	23	0.78
11044558--11044584	6	4.5	6	100	0	54	51	0	0	48	1.00
11046333--11046374	22	1.9	22	85	0	57	40	11	7	40	1.69
11048065--11048103	19	2.1	19	90	0	60	46	12	7	33	1.71
11051675--11051742	35	1.9	35	90	0	109	44	25	7	23	1.79
11054178--11054306	64	2.0	64	90	0	204	40	20	10	28	1.86
11057464--11057855	145	2.7	142	78	7	351	33	14	11	41	1.81
11067415--11067685	124	2.2	125	84	5	336	54	9	16	19	1.69
11067811--11067862	25	2.1	25	89	7	79	63	5	1	28	1.28
11069290--11070090	256	3.2	249	83	4	862	36	19	11	31	1.88
11069281--11070149	126	6.9	127	79	7	815	36	19	11	32	1.88
11070073--11070190	41	2.9	41	77	8	107	38	19	8	33	1.82
11070717--11071063	127	2.7	125	82	4	365	36	16	10	36	1.84
11071297--11071583	74	3.8	74	82	6	346	31	18	16	33	1.93
11071278--11071583	111	2.7	110	82	9	320	31	18	16	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11071301--11071583	37	7.6	37	80	7	272	31	18	16	33	1.93
11073842--11073926	16	5.1	16	70	21	59	54	7	9	29	1.59
11078428--11078473	17	2.5	20	82	13	62	21	10	0	67	1.21
11081987--11082353	182	2.0	181	97	0	689	42	10	8	38	1.70
11086367--11086515	63	2.4	62	82	10	171	46	13	7	32	1.70
11086910--11087029	63	1.9	64	82	5	154	38	18	8	35	1.81
11089334--11089382	16	3.2	14	81	16	53	10	10	2	77	1.07
11089552--11089626	7	10.1	7	72	16	53	76	0	20	4	0.95
11089547--11089588	11	4.0	11	78	12	52	80	0	19	0	0.70
11089554--11089626	23	3.2	22	72	16	60	76	0	19	4	0.94
11089555--11089616	16	3.9	16	77	6	56	75	0	20	3	0.94
11090338--11090370	15	2.2	15	94	0	57	39	18	0	42	1.50
11091215--11091257	19	2.3	19	84	8	52	44	6	2	46	1.43
11092198--11093022	419	2.0	412	88	2	1220	41	12	22	22	1.88
11093449--11093499	26	1.9	27	84	4	68	68	1	3	25	1.17
11093721--11093760	11	3.5	11	86	3	53	72	2	2	22	1.09
11094259--11094332	23	3.2	22	83	9	76	51	24	1	22	1.56
11094357--11094449	17	5.7	16	72	7	62	39	31	2	26	1.68
11094435--11094477	22	2.0	23	90	9	72	46	30	0	23	1.52
11096560--11096599	18	2.2	18	86	8	55	85	2	10	2	0.80
11099559--11099598	10	3.8	11	83	12	57	80	5	15	0	0.88
11099559--11099603	20	2.2	20	92	0	72	82	4	13	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11099558--11099603	10	4.5	10	83	5	56	82	4	13	0	0.81
11100260--11100309	9	5.6	9	79	11	50	86	4	8	2	0.78
11101820--11101866	22	2.1	22	92	0	76	25	25	25	23	2.00
11101858--11101906	22	2.2	22	78	7	55	34	24	18	22	1.96
11102098--11102193	33	2.9	31	75	11	86	32	16	12	38	1.86
11102163--11102262	28	3.4	28	71	22	87	29	22	13	36	1.91
11102162--11102333	61	2.8	60	81	5	195	30	19	12	37	1.89
11102347--11102500	60	2.6	61	84	4	181	28	18	15	37	1.92
11102160--11102576	214	1.9	212	81	11	494	31	19	13	35	1.91
11102527--11102699	64	2.7	64	84	7	201	35	22	10	30	1.89
11102558--11102778	33	6.8	32	69	12	132	32	23	14	30	1.93
11102576--11102743	64	2.6	63	83	7	162	32	23	13	30	1.93
11102752--11103049	33	9.4	33	69	15	130	32	18	14	35	1.90
11102854--11103049	94	2.1	94	82	3	234	29	18	14	37	1.91
11102945--11103002	28	2.1	28	86	0	80	29	24	12	34	1.91
11103310--11103406	48	2.0	48	97	0	185	15	16	17	50	1.78
11103520--11103802	141	2.0	141	99	0	557	34	13	14	36	1.86
11105934--11105960	13	2.1	13	100	0	54	51	33	0	14	1.43
11105864--11105976	23	4.9	21	72	25	77	46	30	0	21	1.57
11105987--11106016	14	2.1	14	93	0	51	43	26	3	26	1.70
11109858--11109920	19	3.1	19	80	13	63	39	4	14	41	1.67
11109867--11109920	24	2.2	25	90	6	85	38	3	14	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11113808--11113870	11	5.3	12	71	21	53	71	1	1	25	1.04
11113804--11113853	24	2.0	25	88	3	75	66	2	2	30	1.14
11113799--11113864	24	2.8	23	79	6	69	68	1	1	28	1.08
11113797--11113875	14	5.5	15	72	14	69	69	1	1	27	1.04
11114559--11114610	19	2.8	19	82	8	63	65	0	5	28	1.16
11114637--11114677	17	2.5	16	88	11	57	78	0	0	21	0.76
11115032--11115144	33	3.3	35	77	16	94	41	11	20	26	1.86
11115071--11115144	33	2.2	33	85	4	96	37	12	21	28	1.89
11115132--11115156	13	1.9	13	100	0	50	48	8	12	32	1.69
11115071--11115223	79	1.9	79	80	2	173	41	11	19	27	1.85
11115150--11115256	33	3.2	33	86	0	142	42	12	18	26	1.85
11115347--11115439	32	2.9	32	84	4	116	53	15	15	16	1.73
11115422--11115499	32	2.4	31	79	12	86	48	11	21	17	1.79
11117698--11117732	16	2.2	16	89	0	52	40	11	14	34	1.82
11122198--11122230	17	1.9	17	93	0	57	54	12	9	24	1.66
11126433--11126472	20	1.9	20	85	10	53	57	0	15	27	1.38
11127339--11127379	20	2.0	20	90	0	64	34	4	14	46	1.66
11127712--11127758	24	2.0	23	91	4	76	17	0	4	78	0.90
11137437--11137588	45	3.2	46	78	10	157	48	12	21	17	1.80
11138212--11138742	115	4.6	114	77	6	414	19	20	14	45	1.85
11139133--11139173	19	2.2	19	86	4	57	7	14	0	78	0.96
11139892--11139941	6	8.8	6	82	12	54	18	0	2	80	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11139886--11139939	5	10.8	5	82	9	58	16	1	1	79	0.91
11140060--11140094	16	2.2	17	90	10	56	54	11	0	34	1.37
11142027--11142085	31	1.9	31	86	6	84	38	6	16	37	1.76
11142073--11142258	55	3.4	56	75	7	177	42	3	13	40	1.61
11142506--11142874	188	2.0	189	92	2	618	40	6	15	36	1.74
11162042--11162076	16	2.2	16	100	0	70	45	11	11	31	1.76
11183156--11183194	21	1.9	20	85	15	53	23	15	5	56	1.59
11184903--11185201	49	6.2	49	76	10	265	33	15	13	37	1.86
11184989--11185078	45	2.0	46	91	2	146	35	15	15	33	1.89
11189615--11189787	83	2.1	84	81	3	197	39	15	15	30	1.87
11189971--11190059	32	2.8	32	83	5	99	15	14	15	53	1.73
11189980--11190071	32	2.9	32	83	6	114	15	18	15	51	1.77
11190136--11190261	33	3.8	33	84	2	137	26	18	11	42	1.85
11190255--11190279	13	1.9	13	100	0	50	32	12	8	48	1.69
11190221--11190309	46	1.9	46	86	0	124	30	22	8	38	1.85
11190312--11190512	103	2.0	103	83	4	253	23	17	11	47	1.80
11190733--11190774	16	2.6	16	85	7	59	23	0	0	76	0.79
11190767--11190806	17	2.4	17	87	8	55	25	5	7	62	1.42
11191559--11191608	24	2.0	24	88	3	73	30	2	2	66	1.14
11191529--11191613	42	2.0	43	84	6	111	27	1	2	69	1.08
11191541--11191604	13	4.7	13	78	14	58	25	1	1	71	1.03
11191552--11191615	29	2.2	29	80	5	76	29	1	1	67	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11195490--11195543	24	2.2	25	90	6	85	42	14	3	38	1.64
11195513--11195552	19	2.1	19	90	0	62	42	15	5	37	1.68
11199502--11199528	13	2.1	13	100	0	54	14	0	33	51	1.43
11201981--11202102	37	3.3	36	71	6	102	53	16	11	18	1.72
11202276--11202460	94	2.0	94	81	4	221	36	15	18	29	1.92
11202482--11202572	33	2.8	33	80	9	105	34	14	16	35	1.89
11202551--11202860	33	9.6	32	68	13	100	31	14	20	32	1.93
11202624--11202757	64	2.1	64	90	2	207	30	13	23	32	1.93
11202624--11202757	33	4.2	32	71	19	102	30	13	23	32	1.93
11202624--11202797	64	2.7	64	83	3	154	32	13	20	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133