genome.fa.s645.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  117  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22545876--22545904	13	2.1	14	93	6	51	10	6	3	79	1.04
22546491--22546579	11	7.8	11	71	12	63	5	14	0	79	0.90
22546490--22546523	17	1.9	18	88	5	52	8	8	0	82	0.85
22549239--22549307	30	2.3	30	87	9	113	42	8	10	39	1.70
22552409--22552435	10	2.7	10	100	0	54	44	0	0	55	0.99
22552671--22552729	27	2.2	27	84	6	75	16	15	25	42	1.88
22553032--22553084	22	2.4	22	84	9	63	3	0	20	75	0.96
22553269--22553317	23	2.1	23	88	0	71	26	14	12	46	1.79
22553452--22553496	21	2.2	20	84	8	54	80	2	8	8	1.00
22553484--22553551	9	7.6	9	82	12	59	73	1	1	23	1.00
22553487--22553535	3	17.0	3	91	8	84	69	0	0	30	0.89
22558914--22559023	41	2.6	41	79	13	109	47	0	0	52	1.00
22558899--22558948	14	3.4	15	72	10	50	44	2	0	54	1.11
22558948--22559082	59	2.2	61	77	13	136	51	1	0	47	1.10
22559471--22559507	17	2.2	17	90	0	56	40	0	0	59	0.97
22566469--22566517	25	1.9	26	91	4	82	46	2	10	40	1.49
22569884--22569935	27	1.9	27	88	7	79	25	5	38	30	1.79
22570282--22570404	18	6.8	18	68	20	78	32	31	4	30	1.79
22570286--22570326	21	2.0	21	90	0	64	26	36	2	34	1.70
22570307--22570405	33	2.9	34	78	13	105	35	28	5	31	1.79
22570786--22570813	6	4.7	6	100	0	56	46	0	0	53	1.00
22572270--22572331	2	33.5	2	72	15	53	45	0	1	53	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22573539--22573615	10	7.8	10	77	8	77	62	2	1	33	1.17
22573541--22573587	21	2.2	21	92	0	76	65	4	0	29	1.11
22573563--22573614	9	5.6	9	81	2	50	63	0	1	34	1.06
22573560--22573644	38	2.1	41	78	8	104	64	0	2	32	1.06
22573539--22573662	19	6.4	19	73	14	76	63	1	2	32	1.17
22573560--22573663	29	3.7	27	70	14	77	64	0	2	32	1.08
22573643--22573732	41	2.2	41	80	13	105	65	4	2	27	1.23
22573658--22573734	20	3.9	20	70	12	52	66	5	1	27	1.21
22573934--22574000	28	2.4	28	80	9	75	32	0	5	61	1.20
22573953--22574035	9	9.0	9	75	12	64	33	0	6	60	1.21
22573962--22574036	35	2.1	36	85	7	100	33	0	6	60	1.23
22574031--22574067	17	2.2	17	90	0	56	45	0	2	51	1.15
22574039--22574145	33	3.2	32	74	10	90	37	0	4	57	1.26
22574099--22574162	17	3.8	17	76	11	60	25	0	6	68	1.12
22574142--22574179	19	2.0	20	84	5	51	26	5	2	65	1.27
22574132--22574219	43	1.9	46	86	11	128	26	2	5	65	1.26
22574133--22574230	48	2.2	43	81	9	106	28	2	6	63	1.30
22574248--22574321	38	2.0	36	84	7	94	32	4	2	60	1.29
22574307--22574351	23	1.9	24	86	4	65	31	2	4	62	1.27
22576343--22576388	14	3.1	15	81	9	58	41	0	2	56	1.11
22576369--22576411	22	1.9	23	90	4	70	30	0	0	69	0.88
22578878--22578911	15	2.2	16	89	5	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22584179--22584220	11	3.8	11	81	12	50	23	0	2	73	0.94
22591958--22592037	41	2.0	41	94	0	142	25	13	12	48	1.77
22591961--22592047	41	2.1	41	89	4	131	28	13	10	47	1.76
22601587--22601626	9	4.4	9	93	6	64	87	0	2	10	0.63
22601583--22601629	17	2.8	17	84	9	69	82	0	4	12	0.80
22606597--22606668	11	6.7	11	88	7	105	81	0	9	8	0.86
22607375--22607524	63	2.4	63	90	0	228	34	10	25	30	1.89
22607858--22608105	21	10.7	21	70	19	136	37	10	14	37	1.81
22607852--22608062	47	4.5	47	95	0	354	36	11	15	36	1.84
22608037--22608089	27	2.0	27	92	0	88	35	13	9	41	1.76
22607991--22608132	73	1.9	73	84	0	185	36	11	12	38	1.81
22608542--22608827	123	2.3	123	86	2	396	24	12	15	47	1.80
22608545--22608867	41	7.9	41	83	1	335	23	12	15	48	1.79
22609460--22609518	10	5.7	10	76	21	59	13	0	8	77	0.97
22609584--22609665	26	3.2	25	78	11	69	46	6	8	39	1.59
22609584--22609638	25	2.2	26	83	9	69	49	5	7	38	1.54
22609546--22609893	184	1.9	184	80	9	417	48	6	8	36	1.60
22611239--22611274	18	1.9	19	88	5	56	61	0	0	38	0.96
22611652--22611746	35	2.7	35	96	0	172	35	20	15	28	1.93
22611881--22611948	21	3.2	22	79	8	70	47	0	1	51	1.09
22611909--22611967	30	1.9	31	90	10	95	52	0	1	45	1.10
22611948--22612045	51	1.9	51	87	8	146	47	1	0	51	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22614540--22614564	13	1.9	13	100	0	50	40	8	4	48	1.51
22619655--22619707	20	2.6	21	73	5	56	58	1	5	33	1.32
22619858--22619912	25	2.2	26	90	3	85	58	5	1	34	1.32
22619943--22620080	28	4.9	28	72	11	84	63	5	1	29	1.24
22619971--22620070	19	5.3	18	68	10	58	66	5	1	28	1.19
22619977--22620025	16	2.7	18	79	17	57	59	2	2	36	1.21
22631868--22632206	168	2.0	168	99	0	669	31	20	8	39	1.83
22641335--22641393	10	6.2	10	73	9	52	84	0	5	10	0.76
22641322--22641391	28	2.5	28	84	13	83	80	0	7	12	0.91
22642232--22642395	10	15.9	10	66	21	56	64	1	4	29	1.20
22642254--22642394	34	4.4	31	77	19	123	61	1	4	32	1.24
22642232--22642413	17	11.4	16	71	16	92	65	1	3	29	1.20
22642366--22642447	25	3.2	24	74	19	69	73	4	1	20	1.09
22642382--22642447	13	5.2	13	82	10	66	75	6	0	18	1.00
22642380--22642447	27	2.4	28	80	11	86	75	5	0	19	1.01
22642394--22642445	7	7.7	7	89	6	72	75	7	0	17	1.03
22642379--22642447	7	9.9	7	82	7	61	75	5	0	18	1.00
22642627--22642819	42	4.5	42	84	3	233	41	19	15	23	1.89
22642627--22642874	44	5.7	43	84	2	232	41	18	15	24	1.89
22642616--22642863	87	2.9	86	81	3	277	41	19	14	25	1.89
22643901--22643968	6	10.7	6	86	9	73	10	19	0	70	1.15
22643913--22643971	27	2.2	27	96	0	109	11	16	0	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22651199--22651232	15	2.3	15	94	0	59	47	0	23	29	1.52
22654545--22654589	13	3.4	13	87	6	63	84	0	0	15	0.62
22654550--22654588	19	2.1	19	95	4	71	84	0	0	15	0.62
22655423--22655511	16	5.5	17	73	17	66	62	2	2	32	1.19
22655418--22655536	3	37.3	3	69	21	57	63	1	2	31	1.17
22655418--22655458	16	2.5	18	84	15	54	60	0	4	34	1.18
22655444--22655537	35	2.5	37	86	10	129	65	2	2	29	1.15
22655476--22655536	21	2.8	21	78	9	68	67	0	1	31	1.01
22659623--22659726	40	2.6	40	84	3	138	41	19	10	28	1.84
22661406--22661476	8	7.1	10	80	15	51	81	1	12	4	0.90
22661436--22661466	8	3.9	8	100	0	62	90	0	9	0	0.46
22661871--22661944	36	2.1	36	92	0	121	51	4	25	18	1.64
22664886--22665171	46	6.2	46	78	8	242	31	8	13	45	1.75
22664886--22665171	92	3.1	90	77	9	267	31	8	13	45	1.75
22664937--22665188	138	1.8	139	78	7	289	33	8	13	44	1.74
22665248--22665303	17	3.3	17	75	9	51	76	5	5	12	1.12
22665297--22665354	30	1.9	30	82	6	73	77	6	10	5	1.11
22665323--22665379	25	2.3	25	79	11	64	75	10	7	7	1.19
22667283--22667323	21	2.0	20	85	9	55	41	0	2	56	1.13
22668173--22668276	32	3.1	32	73	15	111	46	9	7	36	1.66
22670986--22671071	24	3.7	24	69	9	61	36	5	12	45	1.67
22671000--22671086	45	1.9	45	83	0	111	33	5	14	45	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22671400--22671475	16	4.7	16	69	16	50	23	13	18	44	1.85
22671574--22671703	52	2.5	52	77	3	127	33	13	13	39	1.85
22671689--22671786	17	5.7	17	72	7	81	34	16	11	37	1.84
22674892--22675167	142	1.9	142	95	0	498	38	14	21	25	1.92
22681111--22681138	13	2.2	13	100	0	56	39	0	35	25	1.56
22682079--22682131	27	2.0	27	100	0	106	32	11	3	52	1.55
22687007--22687032	13	2.0	13	100	0	52	46	0	30	23	1.53
22689894--22689951	28	2.0	29	93	3	100	41	0	12	46	1.41
22689894--22689959	28	2.4	27	87	10	89	40	0	10	48	1.38
22691101--22691149	24	2.0	24	84	0	62	44	0	4	51	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133