genome.fa.s645.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  90  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17791987--17792038	21	2.5	20	87	6	86	26	19	11	42	1.85
17792485--17792511	14	1.9	14	100	0	54	37	7	18	37	1.79
17793026--17793074	16	3.0	16	72	3	53	40	14	10	34	1.79
17794270--17794313	19	2.3	18	88	7	61	11	2	6	79	1.01
17795283--17795340	22	2.6	22	75	0	62	31	20	22	25	1.98
17795506--17796258	33	23.4	33	71	10	281	33	19	16	31	1.94
17795682--17795746	29	2.2	29	94	0	112	20	27	21	30	1.98
17795751--17795839	32	2.7	33	83	10	112	35	15	16	31	1.91
17795836--17796046	65	3.2	65	74	15	173	34	19	15	29	1.93
17798579--17798971	143	2.7	142	73	5	360	41	16	12	29	1.85
17799197--17799243	10	4.7	10	83	0	58	36	14	12	36	1.85
17800009--17800048	21	2.0	21	90	5	64	30	2	2	65	1.19
17801131--17801166	2	18.0	2	94	0	63	52	0	47	0	1.00
17802588--17802623	17	2.1	18	89	5	56	13	5	0	80	0.88
17802775--17802823	21	2.3	22	79	10	66	46	0	14	38	1.44
17805175--17805215	13	3.4	13	77	16	52	48	0	0	51	1.00
17805212--17805279	28	2.4	28	78	9	77	54	5	0	39	1.25
17807546--17807578	16	2.1	16	100	0	66	39	12	6	42	1.67
17820020--17820062	8	5.5	8	80	5	52	76	0	4	18	0.95
17820043--17820115	24	3.1	22	73	11	65	71	0	16	12	1.15
17820035--17820139	9	12.2	9	73	17	57	71	0	17	11	1.14
17820052--17820104	17	3.1	17	69	2	52	71	0	16	11	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17820021--17820119	33	3.1	32	76	12	103	70	0	13	16	1.16
17820014--17820106	48	1.9	47	81	12	109	69	0	13	16	1.18
17820069--17820119	24	2.1	25	88	3	77	66	0	19	13	1.24
17820045--17820106	7	9.0	7	77	19	60	69	0	17	12	1.19
17821341--17821367	14	1.9	14	100	0	54	37	7	18	37	1.79
17821729--17821782	17	3.1	17	77	15	56	37	12	11	38	1.79
17822216--17822248	3	11.0	3	100	0	66	66	0	0	33	0.92
17824148--17824205	22	2.6	22	72	0	53	32	20	20	25	1.97
17824371--17825160	33	24.5	33	70	10	285	33	18	16	31	1.93
17824547--17824611	29	2.2	29	94	0	112	20	27	21	30	1.98
17824616--17824704	32	2.7	33	83	10	112	35	15	16	31	1.91
17824701--17824911	65	3.2	65	74	15	173	34	19	15	29	1.93
17825435--17825508	25	3.0	25	76	7	87	70	1	1	27	1.04
17825440--17825514	14	5.6	14	68	17	52	70	1	1	26	1.03
17825432--17825514	36	2.3	36	79	10	89	72	1	1	25	0.99
17825516--17825564	17	2.8	18	84	6	66	59	8	2	30	1.38
17825557--17825592	9	3.9	9	89	7	54	72	0	2	25	0.98
17825557--17825592	19	1.9	18	88	5	54	72	0	2	25	0.98
17827308--17827342	15	2.3	15	100	0	70	74	0	0	25	0.82
17827609--17827646	18	2.1	18	90	0	58	44	28	0	26	1.54
17830102--17830142	21	2.0	21	85	0	55	48	2	7	41	1.44
17832958--17832987	14	2.2	14	94	5	53	33	6	0	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17834510--17834581	26	3.0	23	78	20	69	9	18	0	72	1.11
17834539--17834581	22	2.0	21	86	4	59	6	13	0	79	0.93
17835224--17835256	13	2.5	13	85	14	50	66	0	9	24	1.20
17835225--17835258	12	2.8	12	95	4	59	61	0	8	29	1.26
17837730--17837770	16	2.5	17	84	7	50	9	9	2	78	1.06
17837821--17837938	10	11.2	10	67	25	57	71	2	2	23	1.11
17837869--17837951	25	3.1	28	84	8	93	73	2	1	22	1.02
17837824--17837953	12	10.4	12	68	21	72	72	2	3	22	1.10
17837895--17837945	6	8.5	6	78	22	54	80	1	0	17	0.81
17838056--17838109	29	1.9	27	85	7	72	22	29	7	40	1.81
17838138--17838179	21	2.0	20	82	13	50	47	14	11	26	1.78
17838740--17838929	13	13.4	14	72	14	106	60	1	3	35	1.22
17838750--17838929	8	21.1	8	73	14	67	59	1	2	36	1.22
17838746--17838929	3	67.0	3	74	19	136	59	1	2	35	1.21
17838746--17838931	5	35.6	5	76	15	130	59	1	2	36	1.21
17838756--17838929	95	1.9	95	87	10	252	58	1	2	36	1.23
17838944--17839004	23	2.7	23	73	0	59	57	8	8	26	1.56
17839158--17839294	55	2.5	55	78	1	148	40	16	20	22	1.91
17845191--17845246	21	2.7	21	78	13	62	67	1	3	26	1.16
17845213--17845253	10	3.7	11	84	12	57	65	0	2	31	1.05
17845189--17845252	10	6.5	10	73	18	55	68	1	3	26	1.13
17845213--17845278	26	2.7	23	82	15	80	65	1	3	30	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17846108--17846198	8	11.1	8	70	13	51	61	4	3	30	1.31
17846114--17846264	3	56.0	3	67	22	77	59	3	3	33	1.30
17846114--17846266	5	29.6	5	73	11	89	59	3	3	33	1.30
17846119--17846264	22	6.5	22	74	18	97	58	3	3	34	1.31
17846114--17846212	51	2.0	49	84	6	117	59	5	3	32	1.34
17847698--17847741	19	2.3	19	88	7	63	59	20	2	18	1.49
17847895--17847955	29	2.0	31	84	12	83	49	14	3	32	1.60
17848306--17848338	14	2.5	13	86	13	50	69	15	3	12	1.30
17849480--17849513	10	3.4	10	83	0	50	47	17	11	23	1.81
17851772--17851820	22	2.2	22	88	0	71	8	4	34	53	1.50
17851831--17851864	11	2.9	12	86	4	52	11	0	35	52	1.38
17851908--17852166	7	38.7	7	67	14	118	17	1	33	46	1.58
17852064--17852166	40	2.6	40	83	9	129	14	0	34	49	1.50
17851916--17852166	20	12.9	19	67	20	85	17	1	33	47	1.58
17851906--17852162	13	19.3	13	71	14	141	18	1	33	46	1.59
17854866--17854970	44	2.4	44	82	3	131	42	16	10	30	1.81
17855081--17855193	59	1.9	59	83	7	149	37	17	8	36	1.81
17855160--17855444	49	5.8	49	75	8	258	43	16	10	29	1.81
17855185--17855454	97	2.7	98	81	5	285	44	16	9	30	1.79
17855140--17855419	146	1.9	148	86	4	406	42	16	10	31	1.81
17867084--17867119	18	2.0	18	89	10	56	27	0	0	72	0.85
17867090--17867125	14	2.6	14	83	16	56	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17867959--17868063	44	2.4	44	82	6	131	41	16	9	32	1.80
17868148--17868489	49	6.8	49	76	11	287	39	19	10	30	1.85
17868175--17868287	59	1.9	59	88	0	172	37	17	10	34	1.85
17868234--17868489	50	5.2	50	79	7	272	40	18	10	30	1.84
17878986--17879357	145	2.6	144	77	7	358	31	13	15	40	1.85
17882934--17882968	17	2.1	17	94	0	61	31	0	8	60	1.27
17887969--17888383	143	2.9	140	73	7	352	42	14	11	31	1.80
17889418--17889458	21	2.0	21	90	0	64	29	2	2	65	1.18
17890429--17890476	22	2.1	22	92	3	78	22	6	6	64	1.39
17890636--17890694	27	2.2	26	82	5	73	49	32	5	13	1.64
17893298--17893337	2	20.0	2	89	0	62	50	0	47	2	1.14
17894460--17894501	17	2.5	17	88	7	59	80	0	4	14	0.86
17896439--17896481	23	1.9	22	86	13	61	81	2	4	11	0.93
17896447--17896486	21	1.9	21	84	0	53	82	2	5	10	0.91
17897385--17897428	23	2.0	22	86	4	61	54	2	0	43	1.12
17899730--17899762	16	2.1	16	94	0	57	39	9	6	45	1.61
17910092--17910137	20	2.2	21	88	3	67	30	13	15	41	1.85
17912240--17912337	8	11.6	8	76	18	92	71	0	17	11	1.14
17912241--17912337	9	11.3	9	76	13	73	72	0	16	11	1.12
17912242--17912313	7	10.0	7	83	16	78	72	0	15	12	1.13
17913553--17913585	15	2.2	15	94	0	57	33	6	15	45	1.70
17913897--17913965	17	4.1	17	74	7	61	34	26	11	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17913997--17914071	32	2.3	34	77	9	84	32	12	14	41	1.83
17914055--17914084	15	1.9	16	93	6	53	26	10	16	46	1.78
17918216--17918247	16	2.0	16	100	0	64	37	12	6	43	1.68
17918468--17918623	77	2.0	77	96	0	285	34	22	7	35	1.83
17930776--17930845	7	10.0	7	82	14	67	74	0	14	11	1.08
17930775--17930877	9	12.2	9	76	14	80	73	0	16	9	1.08
17930775--17930858	25	3.4	24	80	11	107	73	0	14	11	1.09
17932246--17932301	23	2.5	22	77	8	60	35	8	10	44	1.71
17932412--17932502	17	5.3	17	69	11	60	36	19	12	31	1.89
17933867--17933911	16	2.9	15	81	12	54	15	8	2	73	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133