genome.fa.s645.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  52  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10869527--10869568	22	2.0	21	85	4	57	45	9	16	28	1.79
10870646--10870691	22	2.1	22	100	0	92	28	13	13	45	1.80
10872595--10872766	86	2.0	86	94	0	299	36	20	21	21	1.95
10873583--10873616	13	2.8	12	90	4	50	23	11	0	64	1.26
10873581--10873616	17	2.2	16	90	5	54	25	11	0	63	1.27
10874178--10874211	15	2.3	15	90	5	52	67	0	5	26	1.13
10879672--10879732	18	3.5	17	72	24	56	55	8	4	31	1.50
10879701--10879759	24	2.6	22	80	17	61	54	10	5	30	1.56
10879996--10880120	20	6.4	20	71	20	95	56	11	4	28	1.53
10880010--10880058	22	2.2	22	82	7	64	59	10	4	26	1.48
10880005--10880109	54	1.9	56	88	3	160	59	11	3	25	1.49
10880025--10880088	33	1.9	34	93	3	112	62	10	3	23	1.42
10880049--10880139	43	2.1	43	83	0	110	61	8	3	26	1.41
10880063--10880148	23	4.0	22	78	13	90	58	11	4	25	1.52
10880056--10880138	20	3.9	20	78	12	76	59	9	3	27	1.46
10880063--10880148	43	2.0	43	90	0	136	58	11	4	25	1.52
10880098--10880257	55	2.9	55	87	0	239	53	13	5	28	1.62
10880318--10880364	20	2.3	20	78	7	51	55	4	2	38	1.31
10880385--10880427	21	2.0	21	86	0	59	55	13	2	27	1.51
10880372--10880422	25	2.0	25	85	7	68	58	11	1	27	1.44
10880433--10880470	20	2.0	18	90	10	58	47	10	7	34	1.67
10881083--10881127	20	2.2	20	84	7	56	75	8	0	15	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10881809--10881902	18	5.2	20	70	19	64	41	20	12	25	1.87
10881809--10881907	36	2.7	36	82	1	117	40	21	13	25	1.89
10881868--10881907	18	2.2	18	86	0	53	40	27	12	20	1.88
10881963--10882104	72	2.0	73	84	4	189	44	16	8	30	1.78
10881972--10882108	36	3.8	36	88	1	161	44	14	9	31	1.77
10883382--10883411	11	2.6	11	94	5	51	0	13	0	86	0.57
10884418--10884728	139	2.3	134	82	7	371	49	12	11	26	1.74
10884889--10884936	16	2.9	16	84	6	51	33	6	27	33	1.82
10886307--10886368	24	2.6	24	87	7	90	54	8	1	35	1.39
10886492--10886555	22	3.0	20	71	10	56	62	10	4	21	1.46
10886508--10886553	23	2.0	23	83	4	58	65	10	4	19	1.41
10886452--10886663	55	3.9	55	83	2	241	54	9	7	29	1.59
10886564--10886606	23	1.9	22	85	4	59	51	11	9	27	1.69
10886604--10886673	20	3.3	20	81	11	77	54	7	5	32	1.51
10886604--10886702	43	2.3	43	87	5	139	55	8	5	31	1.51
10886619--10886701	22	3.8	22	72	16	73	56	8	3	31	1.46
10886656--10886685	16	1.9	15	93	6	51	60	6	0	33	1.23
10886488--10886683	55	3.6	55	82	2	205	54	9	6	29	1.58
10886676--10886793	31	3.8	31	69	10	98	52	13	6	27	1.65
10886715--10886823	30	3.7	29	74	8	94	52	12	6	28	1.64
10886683--10886822	61	2.3	61	90	2	212	50	12	7	28	1.68
10886683--10886839	61	2.6	61	85	5	176	51	11	7	29	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10886845--10886895	25	2.0	25	84	0	66	58	9	0	31	1.30
10887554--10887597	20	2.2	20	88	8	63	72	4	0	22	1.02
10890396--10890940	277	2.0	273	87	2	786	28	21	15	34	1.93
10895656--10895709	20	2.7	20	94	0	90	14	12	37	35	1.85
10901226--10901335	54	2.0	54	96	0	202	46	10	17	25	1.80
10901335--10901538	106	1.9	106	90	4	322	36	12	17	33	1.87
10902157--10902569	204	2.0	204	99	0	817	32	15	15	35	1.90
10907116--10907149	16	2.1	16	94	0	59	35	0	20	44	1.52
10913997--10914030	16	2.1	16	94	0	59	29	0	26	44	1.55
10916242--10916305	29	2.2	29	94	0	110	46	9	12	31	1.73
10923116--10923156	21	1.9	22	95	5	75	34	14	9	41	1.79
10934824--10934859	18	1.9	19	88	5	56	2	19	0	77	0.88
10935330--10935361	16	1.9	16	93	6	55	6	0	18	75	1.01
10935521--10935563	18	2.4	17	84	7	50	74	4	9	11	1.20
10939408--10939453	23	2.0	23	95	0	83	39	19	8	32	1.82
10939883--10940048	88	1.9	88	81	6	199	48	10	12	28	1.74
10948952--10948976	2	12.5	2	100	0	50	52	0	0	48	1.00
10949973--10950011	18	2.2	18	85	0	51	69	2	2	25	1.14
10950205--10950236	2	16.0	2	100	0	64	50	50	0	0	1.00
10950288--10950328	20	2.0	20	85	0	55	60	2	7	29	1.36
10952033--10952254	59	3.7	60	75	8	182	40	14	17	27	1.89
10952028--10952254	121	1.9	118	82	7	287	40	14	17	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10953919--10953990	34	2.2	33	87	5	101	37	15	11	36	1.83
10953938--10954008	34	2.2	31	82	9	81	30	16	11	40	1.84
10954383--10954408	7	3.7	7	100	0	52	38	0	15	46	1.46
10956704--10956968	134	2.0	135	81	2	318	31	13	17	36	1.89
10961288--10961360	3	24.7	3	94	2	85	58	0	8	32	1.27
10961629--10961706	39	2.0	39	100	0	156	51	10	5	33	1.58
10961757--10961869	58	2.0	57	91	1	181	41	12	14	31	1.82
10962497--10962553	30	1.9	30	96	0	105	54	10	3	31	1.51
10962588--10962646	31	1.9	30	83	10	75	42	15	8	33	1.77
10970073--10970683	305	2.0	305	98	0	1177	35	12	11	40	1.79
10971781--10971818	19	2.1	18	85	9	51	2	31	0	65	1.06
10971854--10971967	21	5.2	22	76	14	69	2	21	0	74	0.99
10971854--10971970	11	10.6	11	78	13	75	2	22	0	74	0.99
10976541--10976568	13	2.2	13	100	0	56	7	0	21	71	1.09
10984487--10984526	6	6.7	6	100	0	80	67	0	0	32	0.91
10984487--10984542	18	3.0	18	89	5	67	64	3	0	32	1.11
10985738--10985837	51	1.9	52	86	6	141	62	3	7	28	1.36
10984904--10986524	822	2.0	822	88	3	2408	44	5	8	41	1.58
10988152--10988646	59	8.4	60	78	8	346	33	10	7	48	1.66
10988374--10988576	58	3.6	55	83	9	162	30	9	9	50	1.67
10988271--10988489	122	1.8	120	86	5	314	31	11	7	49	1.67
10988390--10988608	56	3.8	57	86	6	264	31	9	10	49	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10988149--10988609	114	3.9	116	76	10	334	33	11	7	47	1.68
10989778--10990179	85	4.7	86	77	7	358	44	14	20	20	1.87
10989802--10990173	169	2.2	170	81	2	410	44	15	19	20	1.87
10990238--10990267	14	2.1	14	100	0	60	63	6	0	30	1.20
10990314--10990344	15	2.1	15	93	0	53	45	9	12	32	1.75
10990454--10990574	34	3.6	34	90	0	179	45	8	12	33	1.72
10990403--10990602	17	11.9	17	75	8	88	43	8	16	32	1.78
10990480--10990603	51	2.5	50	75	10	119	42	10	15	31	1.80
10990566--10990616	15	3.3	15	76	10	57	33	9	23	33	1.88
10990548--10990614	17	4.1	17	78	7	57	40	8	20	29	1.83
10990687--10990724	17	2.2	17	86	9	51	47	13	13	26	1.79
10992019--10992065	8	6.0	8	82	9	53	12	10	0	76	1.02
10992015--10992063	15	3.3	15	82	5	64	10	8	0	81	0.87
10992020--10992068	15	3.1	15	82	8	55	12	12	0	75	1.05
10996010--10996517	58	8.7	58	81	9	421	34	10	7	47	1.67
10996010--10996507	117	4.2	116	79	6	470	33	11	7	47	1.67
10998143--10998167	2	12.5	2	100	0	50	48	0	0	52	1.00
10998512--10998749	119	2.0	119	100	0	476	36	15	11	36	1.84
10999179--10999230	10	5.2	10	75	9	52	28	13	17	40	1.87
10999855--10999903	18	2.7	18	78	9	55	40	0	14	44	1.45
10999971--11000124	3	51.7	3	85	5	152	28	3	5	62	1.32
11012592--11012812	113	2.0	113	81	7	261	24	26	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11012491--11012832	114	3.0	113	77	11	349	23	27	15	32	1.95
11012751--11012864	53	2.1	53	84	12	153	27	28	14	28	1.96
11013136--11013200	3	21.7	3	80	9	71	30	3	3	63	1.25
11014062--11014122	23	2.7	23	82	5	72	19	11	0	68	1.19
11015764--11015802	15	2.5	15	83	4	51	74	2	5	17	1.12
11016528--11016563	18	2.0	18	88	0	54	63	8	0	27	1.23
11024068--11024112	23	2.0	23	86	8	65	20	6	0	73	1.05
11024310--11024366	19	3.0	19	89	5	80	21	15	24	38	1.92
11031173--11031292	20	6.5	20	73	20	109	42	23	1	32	1.64
11031190--11031302	51	2.2	50	85	4	156	43	23	1	30	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133