genome.fa.s645.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  63  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12802693--12802995	32	9.6	31	72	10	154	36	17	14	31	1.90
12805345--12805400	3	18.7	3	81	7	69	64	0	5	30	1.16
12805398--12805422	13	1.9	13	100	0	50	72	4	0	24	1.02
12805739--12805778	13	3.2	13	82	7	55	60	15	7	17	1.57
12807588--12807631	20	2.3	19	84	4	52	45	27	13	13	1.81
12807588--12807655	19	3.6	19	78	4	57	48	25	10	16	1.77
12807659--12807724	19	3.5	19	76	12	73	40	22	15	21	1.90
12807739--12807792	20	2.7	21	80	8	67	46	24	5	24	1.74
12815743--12815804	22	3.0	21	77	9	58	48	0	1	50	1.10
12824762--12824845	42	2.0	42	97	0	159	41	7	22	28	1.80
12827677--12827713	16	2.2	17	90	4	58	62	10	13	13	1.55
12841075--12841151	33	2.4	33	84	2	93	50	14	18	16	1.78
12860137--12860183	18	2.6	18	86	6	60	14	0	40	44	1.46
12860157--12860241	30	2.5	33	78	20	95	18	2	31	47	1.62
12860175--12860233	30	1.9	31	93	3	102	16	3	32	47	1.64
12860191--12860273	39	2.2	37	84	4	112	15	1	34	48	1.53
12860251--12860297	24	2.0	24	95	0	85	14	0	36	48	1.44
12860286--12860348	19	3.6	18	73	20	62	22	0	31	46	1.52
12860287--12860363	33	2.3	33	93	0	127	22	0	29	48	1.51
12860395--12860440	19	2.4	19	88	0	74	17	0	41	41	1.49
12860353--12860436	44	2.0	44	83	4	109	19	0	34	46	1.50
12862021--12862327	144	2.1	143	85	4	420	40	12	14	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12867816--12867841	12	2.2	12	100	0	52	7	15	7	69	1.35
12869468--12869561	36	2.9	31	73	14	89	38	14	17	29	1.89
12871680--12871714	18	1.9	18	88	0	52	40	8	22	28	1.84
12871766--12871828	18	3.3	19	84	6	83	12	3	44	39	1.59
12874367--12874395	9	3.2	9	100	0	58	37	0	31	31	1.58
12877609--12877944	145	2.3	143	79	5	363	33	14	12	39	1.84
12879770--12879941	31	5.8	29	70	20	99	50	34	1	13	1.52
12879857--12879939	43	1.9	43	87	4	123	50	32	1	15	1.52
12879770--12879920	12	12.8	12	66	24	63	50	34	1	12	1.51
12879757--12879995	19	12.8	19	72	16	135	48	34	2	13	1.57
12882582--12882620	20	2.0	20	89	0	60	17	5	28	48	1.68
12882638--12882694	25	2.3	26	78	9	73	15	10	24	49	1.76
12882699--12882766	27	2.5	27	80	7	75	25	4	14	55	1.57
12882706--12882768	14	4.6	14	69	15	51	26	3	14	55	1.54
12882985--12883025	22	1.9	21	90	5	64	26	2	0	70	0.99
12884844--12884884	20	2.1	19	86	13	57	26	4	0	68	1.10
12885191--12885488	160	1.9	159	86	3	429	32	16	12	38	1.86
12885517--12885681	36	4.6	36	74	3	109	50	17	17	13	1.77
12886016--12886080	17	3.9	16	82	7	76	1	7	9	81	0.93
12894293--12894342	3	16.7	3	100	0	100	66	0	0	34	0.92
12898155--12898197	8	5.4	8	84	15	54	20	0	0	79	0.74
12898139--12898196	22	2.6	22	81	10	57	25	1	0	72	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12898154--12898197	15	2.8	16	86	13	65	22	0	0	77	0.77
12898417--12898458	12	3.7	12	75	12	52	19	11	26	42	1.85
12898443--12898516	38	1.9	38	89	5	114	17	14	17	50	1.79
12898516--12898556	14	2.9	15	85	10	59	34	0	9	56	1.32
12898767--12898806	12	3.1	14	75	17	50	27	2	0	70	1.01
12898768--12898813	22	2.1	22	84	8	58	28	2	0	69	1.00
12900568--12900602	12	2.8	13	91	8	56	25	0	0	74	0.82
12900568--12900604	13	2.9	12	88	11	56	27	0	0	72	0.84
12903447--12903493	6	7.8	6	81	13	53	14	2	2	80	0.89
12906137--12906165	10	2.9	10	100	0	58	31	20	20	27	1.98
12915280--12915395	50	2.3	50	86	1	162	35	13	15	35	1.87
12915458--12915509	26	2.0	26	100	0	104	38	7	11	42	1.70
12915489--12915611	60	2.1	60	84	1	158	38	7	12	42	1.70
12915550--12915658	50	2.2	50	85	3	139	34	8	15	41	1.77
12918060--12918186	18	6.8	18	78	8	130	48	37	1	12	1.51
12918092--12918250	12	12.9	12	68	21	73	48	35	1	13	1.54
12918076--12918250	19	9.4	18	72	12	124	47	36	1	14	1.54
12918075--12918188	37	3.1	38	84	7	162	46	39	0	13	1.49
12918315--12918405	19	4.8	19	76	8	87	43	35	3	17	1.65
12918370--12918503	31	4.4	30	71	20	84	50	36	1	11	1.47
12918370--12918486	19	6.3	19	66	11	71	49	35	1	12	1.51
12918454--12918532	30	2.6	31	80	6	90	50	37	1	10	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12922162--12922278	7	16.4	7	82	3	99	21	1	29	47	1.61
12922162--12922281	21	5.6	21	83	13	113	22	1	29	46	1.61
12922281--12922335	17	3.2	16	80	10	65	21	5	29	43	1.75
12924284--12924350	20	3.3	20	79	8	91	29	11	11	46	1.77
12924584--12924616	16	2.1	16	94	5	59	6	6	18	69	1.30
12924643--12924801	53	3.1	49	75	9	138	40	10	10	39	1.72
12924807--12924941	51	2.7	49	87	6	200	44	14	11	29	1.80
12927484--12927579	46	2.1	46	86	0	129	18	11	16	53	1.73
12928421--12928487	30	2.2	29	82	10	73	17	7	1	73	1.14
12928844--12928941	38	2.6	38	82	7	121	43	19	14	22	1.87
12936653--12936692	21	1.9	21	84	0	53	42	15	17	25	1.88
12940203--12940353	43	3.5	44	83	5	193	28	17	13	40	1.88
12941563--12941610	19	2.6	18	81	15	53	18	10	2	68	1.28
12942325--12942477	79	1.9	79	85	2	209	36	15	13	34	1.86
12946471--12946495	13	1.9	13	100	0	50	32	32	16	20	1.94
12948482--12948506	13	1.9	13	100	0	50	8	4	8	80	1.03
12948485--12948545	24	2.5	24	84	7	70	11	1	11	75	1.12
12948454--12948549	8	11.6	8	68	10	50	12	2	9	76	1.11
12948499--12948549	24	2.1	24	89	7	77	11	0	9	78	0.97
12948479--12948550	12	5.6	12	75	12	63	9	1	11	77	1.05
12948627--12948785	79	2.0	79	95	0	282	35	9	13	41	1.76
12953196--12953378	63	2.9	63	92	0	294	39	7	21	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12953997--12954046	21	2.4	21	86	6	75	46	10	10	34	1.71
12954395--12954656	41	6.4	41	78	6	190	24	12	20	41	1.87
12954472--12954827	43	8.6	40	75	9	164	24	13	20	41	1.88
12954577--12954956	43	8.8	43	70	15	203	22	13	20	43	1.87
12954829--12954988	87	1.9	87	86	2	234	21	13	17	48	1.81
12954829--12954954	42	3.0	42	75	6	119	22	14	18	45	1.85
12954861--12954987	42	2.9	44	74	5	132	22	13	19	44	1.85
12956746--12956774	14	2.1	14	100	0	58	37	41	6	13	1.72
12957802--12957887	12	6.7	12	72	15	57	10	1	11	76	1.07
12965771--12965839	11	6.4	11	72	11	54	39	2	31	26	1.71
12974789--12974828	20	2.0	20	100	0	80	40	0	10	50	1.36
12975127--12975582	43	10.3	43	79	8	427	44	14	13	27	1.83
12975221--12975323	52	2.0	52	94	0	179	46	12	12	28	1.78
12975273--12975582	87	3.6	88	80	6	364	43	15	14	27	1.85
12975932--12976195	17	15.5	17	71	5	95	36	13	15	34	1.86
12975932--12976101	34	5.0	34	71	4	121	39	13	12	34	1.83
12976164--12976221	17	3.4	17	85	2	71	39	6	18	34	1.78
12976412--12976482	22	3.1	22	73	15	72	42	21	4	32	1.72
12976380--12976560	46	4.0	46	77	6	143	38	15	8	37	1.79
12976380--12976624	92	2.7	91	75	10	204	38	15	9	36	1.79
12976853--12977249	139	2.8	138	77	11	325	41	17	13	28	1.87
12978677--12978744	32	2.1	32	97	0	127	58	0	19	22	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12990338--12990368	16	1.9	16	100	0	62	32	35	0	32	1.58
12997540--12997579	21	1.9	21	89	0	62	22	27	22	27	1.99
13007113--13007375	141	1.9	142	85	8	376	36	9	3	51	1.50
13008007--13008042	2	18.5	2	88	5	56	50	0	2	47	1.15
13013347--13013381	17	2.1	18	89	10	56	31	11	5	51	1.61
13021939--13021982	22	2.0	22	86	4	63	54	4	13	27	1.58
13022254--13022298	17	2.6	17	82	6	56	66	11	8	13	1.44
13026426--13026471	14	3.5	14	72	27	55	36	4	13	45	1.63
13026411--13026483	25	2.9	25	95	0	128	41	2	10	45	1.54
13029147--13029180	18	1.9	17	88	5	50	41	8	0	50	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133