genome.fa.s645.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  85  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16910346--16910411	5	13.2	5	83	15	66	6	0	12	81	0.85
16910337--16910427	15	6.2	14	77	16	71	6	0	10	82	0.84
16910351--16910412	6	10.8	6	81	16	53	6	0	11	82	0.84
16910337--16910428	14	6.7	13	76	21	82	7	0	10	81	0.87
16911759--16911815	17	3.2	17	82	7	69	5	12	3	78	1.03
16911772--16911815	19	2.4	19	88	7	65	4	11	4	79	1.02
16915214--16915260	24	2.0	24	95	0	85	23	14	8	53	1.69
16921686--16921758	33	2.2	32	92	4	128	41	9	17	31	1.82
16921894--16921945	23	2.2	23	83	13	61	57	5	13	23	1.57
16923726--16923767	22	1.9	22	90	0	66	21	7	0	71	1.09
16924084--16924108	3	8.3	3	100	0	50	36	0	0	64	0.94
16924254--16924289	18	2.0	18	100	0	72	61	0	16	22	1.35
16927029--16927079	23	2.1	25	82	7	61	43	1	3	50	1.31
16927062--16927094	16	2.1	16	88	5	50	42	0	0	57	0.98
16932643--16932691	20	2.5	20	76	6	55	48	8	6	36	1.58
16932664--16932757	28	3.4	28	73	5	93	44	8	7	39	1.63
16933267--16933299	15	2.2	15	94	0	57	33	0	3	63	1.10
16933942--16934007	28	2.4	28	89	0	96	37	13	10	37	1.80
16934228--16934451	61	3.7	60	74	9	188	42	14	9	33	1.77
16935133--16935172	14	2.9	14	85	3	55	47	5	15	32	1.66
16935427--16935496	11	6.7	10	70	20	54	37	0	0	62	0.95
16935440--16935490	15	3.6	15	71	15	54	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16936669--16936724	27	2.1	27	90	6	87	46	16	19	17	1.84
16937233--16937279	23	2.1	22	84	11	60	19	4	2	74	1.09
16937782--16937825	19	2.4	18	80	3	52	54	11	11	22	1.68
16939954--16939980	12	2.2	12	100	0	54	51	11	7	29	1.64
16940649--16940683	16	2.2	16	94	0	61	42	5	14	37	1.69
16946985--16947021	11	3.2	12	88	11	51	35	0	0	64	0.94
16947182--16947718	267	2.0	269	87	1	783	39	10	16	33	1.82
16948308--16948410	20	5.2	20	68	14	79	27	5	26	40	1.78
16948294--16948413	39	3.1	37	74	19	111	25	5	24	44	1.76
16948550--16948586	17	2.2	17	90	9	58	24	8	0	67	1.17
16949824--16949868	21	2.2	21	88	4	65	2	4	20	73	1.11
16949886--16949938	24	2.2	24	83	10	63	9	15	11	64	1.50
16950982--16951278	106	2.8	105	80	5	294	51	9	15	22	1.72
16952657--16952701	17	2.5	19	82	13	60	8	8	2	80	1.00
16952657--16952696	16	2.5	16	87	0	53	10	7	2	80	1.00
16958749--16958804	27	2.1	27	96	0	103	26	17	12	42	1.85
16959823--16959855	3	11.0	3	100	0	66	33	0	0	66	0.92
16965058--16965090	12	2.8	12	90	0	57	21	15	9	54	1.68
16969802--16969839	15	2.5	16	83	12	53	78	0	18	2	0.86
16970238--16970411	73	2.4	73	80	11	198	45	9	5	38	1.61
16970397--16970453	29	2.0	29	82	0	69	38	10	8	42	1.71
16970607--16970639	8	4.1	8	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16970774--16970925	76	2.0	76	83	2	189	45	5	12	36	1.65
16975096--16975134	19	2.1	19	100	0	78	30	38	5	25	1.78
16977168--16977393	81	2.8	77	80	9	222	46	8	9	34	1.68
16977285--16977479	80	2.4	80	80	5	198	46	6	9	36	1.63
16977358--16977600	123	2.0	122	91	0	396	46	7	11	34	1.67
16977660--16977859	80	2.5	79	77	3	204	45	8	7	39	1.62
16977648--16978148	80	6.3	80	72	10	183	46	9	6	36	1.64
16977924--16978150	80	2.9	78	77	9	187	46	11	7	35	1.66
16982155--16982245	46	2.0	46	93	0	155	37	12	16	34	1.86
16982593--16982625	2	16.5	2	100	0	66	51	0	0	48	1.00
16988729--16988765	18	2.1	18	94	0	65	27	16	18	37	1.92
16992439--16992567	61	2.1	62	85	5	181	47	13	8	30	1.73
16992974--16993020	13	3.1	15	82	11	53	65	10	0	23	1.23
16998009--16998078	31	2.3	30	81	15	83	35	1	11	51	1.47
16998636--16998665	15	2.0	15	93	0	51	0	10	0	90	0.47
17005525--17005563	2	19.5	2	100	0	78	51	0	0	48	1.00
17011192--17011292	3	33.3	3	80	7	107	59	2	4	32	1.34
17013256--17013288	15	2.2	15	94	0	57	21	24	12	42	1.86
17013635--17013701	15	4.7	15	67	20	54	23	25	14	35	1.94
17018357--17018402	3	15.7	3	86	4	67	60	0	2	36	1.09
17018494--17018531	3	12.7	3	100	0	76	68	0	0	31	0.90
17021522--17021581	29	2.1	29	100	0	120	56	6	16	20	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17021634--17021926	31	9.4	32	71	10	160	32	18	20	28	1.96
17022422--17022724	97	3.1	96	79	7	295	29	13	16	40	1.86
17022411--17022771	49	7.2	49	81	6	323	29	13	15	41	1.86
17025046--17025093	12	3.9	12	75	5	51	45	39	2	12	1.54
17025045--17025100	7	8.7	7	72	18	50	44	39	3	12	1.60
17025049--17025100	19	2.8	20	85	11	74	42	40	3	13	1.62
17025331--17025382	25	2.1	25	100	0	104	36	21	11	30	1.89
17025811--17025988	61	2.9	60	81	3	203	29	16	11	42	1.83
17025996--17026288	7	45.0	6	67	19	87	43	32	3	20	1.69
17025990--17026076	20	4.4	19	80	12	95	44	36	1	17	1.56
17025992--17026288	13	22.8	13	68	15	118	43	32	3	20	1.68
17026698--17026754	25	2.2	24	85	11	78	50	3	5	40	1.42
17026698--17026758	26	2.4	25	89	8	88	52	3	4	39	1.39
17027410--17027444	16	2.2	16	90	10	54	11	0	20	68	1.20
17033875--17033922	22	2.1	23	96	3	89	20	14	16	47	1.82
17045208--17045242	16	2.2	16	90	5	54	71	0	28	0	0.86
17045942--17045971	15	2.0	15	93	0	51	43	0	30	26	1.55
17048748--17048930	61	3.0	61	87	4	262	26	15	13	44	1.83
17048933--17049036	14	7.9	14	70	16	69	48	34	0	16	1.53
17048937--17049029	26	3.6	25	78	7	80	47	34	1	17	1.55
17048933--17049036	7	15.7	7	66	15	51	48	34	0	16	1.53
17051317--17051426	37	3.0	37	86	5	143	32	10	18	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17051760--17051799	18	2.2	18	86	8	55	2	5	5	87	0.73
17053455--17053506	27	2.0	27	84	3	70	15	0	38	46	1.46
17053552--17053747	13	14.3	13	66	20	62	18	1	37	41	1.60
17053539--17053643	51	2.1	49	81	13	117	19	1	37	41	1.62
17053663--17053767	7	15.9	7	75	11	96	17	0	38	44	1.49
17053685--17053767	33	2.5	33	96	2	148	18	0	37	44	1.50
17053602--17053736	20	6.9	20	70	13	77	19	1	35	43	1.60
17053720--17053767	20	2.4	20	75	0	51	14	0	37	47	1.44
17058151--17058239	40	2.2	41	89	2	135	33	6	14	44	1.72
17059521--17059545	2	12.5	2	100	0	50	0	0	48	52	1.00
17059821--17059854	17	2.0	17	88	11	52	52	11	5	29	1.61
17062951--17062995	16	2.7	17	82	3	56	40	8	13	37	1.76
17064080--17064114	18	1.9	18	88	0	52	34	11	14	40	1.82
17064145--17064406	110	2.4	110	79	10	259	42	9	13	34	1.76
17065396--17065436	20	2.0	20	100	0	82	29	9	19	41	1.83
17066528--17066588	22	2.7	23	76	5	61	49	0	8	42	1.32
17066568--17066619	27	1.9	27	84	7	70	53	3	1	40	1.30
17066701--17066754	25	2.2	25	83	6	65	48	3	1	46	1.30
17066710--17066772	12	5.4	12	76	12	53	52	3	0	44	1.17
17067060--17067089	2	15.0	2	100	0	60	50	0	0	50	1.00
17067932--17067985	27	2.0	27	100	0	108	22	22	11	44	1.84
17081345--17081431	3	31.3	3	82	13	89	68	2	1	27	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17089252--17089295	16	2.8	16	89	0	61	36	15	11	36	1.84
17089927--17089979	27	2.0	27	84	0	70	22	9	33	33	1.86
17100798--17100841	16	2.8	16	89	0	61	36	15	11	36	1.84
17101472--17101524	27	2.0	27	84	0	70	22	9	33	33	1.86
17103488--17103529	20	2.0	21	86	9	59	38	4	16	40	1.70
17107295--17107337	20	2.2	20	87	8	61	51	20	4	23	1.66
17109270--17109308	16	2.3	18	91	8	64	12	5	2	79	1.00
17109758--17109796	17	2.2	18	95	4	71	25	7	5	61	1.44
17111182--17111254	20	4.1	20	70	26	63	30	6	9	53	1.59
17111205--17111258	16	3.3	16	78	2	63	29	7	9	53	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133