genome.fa.s645.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  71  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14034205--14034283	27	3.1	27	67	23	80	50	10	15	24	1.74
14037778--14038033	115	2.2	117	84	5	324	35	14	8	42	1.75
14037774--14038053	57	4.8	58	83	7	320	35	13	8	42	1.74
14037835--14038051	118	1.8	115	85	4	290	37	12	6	43	1.69
14038069--14038133	5	12.4	5	78	15	53	80	0	3	16	0.85
14038076--14038139	5	11.2	6	81	11	57	78	0	4	17	0.92
14038069--14038139	17	4.4	16	75	18	67	78	0	4	16	0.90
14039065--14039100	9	3.9	9	88	3	54	83	0	16	0	0.65
14039124--14039208	33	2.7	32	88	3	118	60	0	4	35	1.18
14039104--14039248	9	15.0	10	70	18	71	65	1	4	28	1.19
14039221--14039249	12	2.3	13	94	5	51	86	0	0	13	0.58
14039510--14039812	42	7.1	42	79	9	280	39	20	14	24	1.91
14039510--14039812	131	2.4	125	81	9	312	39	20	14	24	1.91
14039668--14039812	41	3.5	40	84	10	177	37	20	14	27	1.91
14040855--14040889	8	4.4	8	96	0	61	11	2	0	85	0.69
14051340--14051554	58	3.7	58	87	1	290	34	12	6	46	1.69
14051571--14051627	5	11.4	5	82	14	73	78	0	1	19	0.83
14051571--14051624	18	3.2	17	87	7	83	79	0	1	18	0.82
14051967--14052321	57	6.2	58	86	4	427	38	11	7	43	1.69
14052317--14052367	5	9.8	5	84	16	68	80	0	1	17	0.81
14052327--14052370	6	7.8	6	85	10	58	79	0	2	18	0.83
14052317--14052370	11	5.1	11	80	14	69	79	0	1	18	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14052702--14052886	60	3.2	59	82	5	198	36	12	7	43	1.70
14052883--14053043	9	16.9	9	73	21	77	72	3	2	22	1.11
14052882--14052952	5	13.4	5	85	11	81	78	0	2	18	0.86
14052882--14052958	6	13.0	6	82	9	72	77	0	3	18	0.91
14052987--14053046	13	4.8	12	82	15	61	75	1	1	21	0.99
14052883--14053042	22	7.1	22	67	21	77	71	3	2	22	1.12
14053778--14053837	17	3.6	16	84	10	77	63	0	5	31	1.16
14053776--14053829	20	2.9	20	81	18	71	64	0	5	29	1.16
14053759--14053894	53	2.6	52	83	10	147	63	0	4	31	1.19
14053858--14053986	4	32.2	4	68	25	51	72	2	2	23	1.08
14053795--14053926	53	2.5	53	80	8	135	63	1	3	31	1.21
14053902--14053981	18	4.6	18	76	19	64	77	3	2	16	1.02
14053899--14053982	15	5.5	14	80	14	71	77	3	2	16	1.02
14053899--14053989	24	3.9	23	76	13	78	76	3	2	17	1.02
14054844--14054892	16	2.9	17	84	9	64	26	10	8	55	1.61
14056165--14056202	13	2.9	14	80	11	53	0	7	10	81	0.87
14057519--14057544	7	3.7	7	100	0	52	46	26	11	15	1.80
14059120--14059164	24	1.9	23	82	13	56	77	2	0	20	0.87
14067058--14067108	22	2.5	19	90	9	75	76	0	13	9	1.02
14067054--14067108	19	3.0	18	87	10	76	78	0	12	9	0.97
14067067--14067111	15	2.9	15	86	6	54	75	0	15	8	1.03
14068154--14068269	50	2.4	48	78	4	135	26	12	15	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14068246--14068291	22	2.1	22	95	0	83	19	17	28	34	1.94
14068269--14068699	42	10.0	43	76	8	322	28	13	16	42	1.85
14068269--14068699	85	5.0	85	77	8	347	28	13	16	42	1.85
14068368--14068740	43	8.8	43	77	10	302	28	12	16	41	1.85
14069925--14069955	3	10.3	3	100	0	62	64	0	0	35	0.94
14071619--14071695	35	2.1	37	90	7	131	22	19	14	44	1.86
14071626--14071701	36	2.1	36	97	2	145	21	21	10	47	1.80
14072134--14072180	17	2.7	17	83	12	60	8	17	0	74	1.05
14072124--14072207	8	10.4	7	75	22	53	5	17	0	76	0.99
14074818--14074995	37	5.1	36	69	15	117	33	6	24	35	1.81
14074846--14074908	32	2.0	32	87	0	90	28	6	23	41	1.79
14075017--14075089	37	2.0	37	86	5	103	28	12	19	39	1.88
14077081--14077129	19	2.6	19	83	6	64	18	4	36	40	1.70
14077207--14077282	23	3.2	23	67	17	64	55	10	11	22	1.66
14077182--14077301	49	2.4	49	94	0	213	50	7	14	27	1.69
14077211--14077292	25	3.4	25	66	23	66	53	8	14	23	1.68
14078974--14079009	16	2.2	16	95	0	63	30	0	25	44	1.54
14080475--14080515	21	1.9	22	90	5	66	36	14	17	31	1.90
14081218--14081274	25	2.3	24	76	5	60	22	1	7	68	1.23
14092840--14092873	13	2.6	13	86	13	52	73	0	20	5	1.04
14094605--14094637	12	2.5	13	90	9	50	78	0	9	12	0.95
14094673--14094797	42	3.0	42	89	2	187	36	23	10	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14094737--14094921	101	1.8	101	86	0	271	30	22	11	34	1.90
14094986--14095033	21	2.3	21	92	0	78	18	27	14	39	1.90
14095063--14095144	41	2.0	41	85	4	112	35	21	10	31	1.89
14095646--14096093	98	4.6	97	85	3	585	34	15	14	35	1.88
14095614--14096101	196	2.5	196	85	4	647	34	16	14	34	1.89
14096725--14097128	144	2.8	144	79	4	429	33	13	10	41	1.80
14097627--14097661	18	1.9	18	88	0	52	57	5	25	11	1.56
14101746--14101816	3	23.7	3	91	0	115	32	29	1	36	1.66
14101803--14101911	3	36.3	3	86	0	101	24	3	7	64	1.36
14102571--14102604	16	2.3	14	90	10	50	67	20	2	8	1.31
14103000--14103042	21	2.0	21	95	0	77	32	27	4	34	1.78
14107840--14107878	21	1.9	21	94	5	71	43	15	5	35	1.69
14108435--14108590	83	1.9	83	89	0	240	38	17	16	28	1.91
14113012--14113056	20	2.2	20	92	0	72	42	11	24	22	1.86
14114482--14114528	21	2.2	21	92	0	76	36	34	6	23	1.80
14114940--14115072	65	2.0	65	91	0	212	36	5	17	41	1.72
14121105--14121133	14	2.0	15	93	6	51	58	0	0	41	0.98
14121124--14121169	21	2.1	21	84	4	56	52	0	2	45	1.13
14123691--14123757	29	2.2	31	86	5	93	49	1	0	49	1.10
14125536--14125578	19	2.1	21	84	16	56	27	2	0	69	1.00
14129426--14129485	27	2.3	26	79	2	66	11	5	25	58	1.53
14130516--14130586	37	1.9	37	85	2	99	14	14	21	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14130945--14131004	27	2.3	26	82	2	75	11	5	23	60	1.51
14134238--14134280	18	2.4	17	85	11	59	27	6	6	58	1.50
14134720--14134799	41	2.0	41	87	0	115	41	12	17	28	1.86
14138931--14138974	21	2.2	20	83	4	52	9	15	2	72	1.19
14139894--14139957	8	8.0	8	78	13	62	62	12	12	12	1.55
14139871--14139971	48	2.2	46	84	8	132	65	15	7	10	1.46
14141713--14141992	141	2.0	141	92	0	470	43	17	11	28	1.83
14146027--14146074	24	2.0	24	100	0	96	33	16	12	37	1.86
14148727--14148787	29	2.1	29	87	0	86	21	26	14	37	1.92
14154344--14154381	20	1.9	19	89	5	58	39	5	7	47	1.55
14156149--14156292	35	4.1	35	69	12	105	52	13	15	18	1.75
14156306--14156403	36	2.7	36	84	10	128	53	13	18	15	1.74
14156729--14156796	36	1.9	36	84	3	93	57	13	8	20	1.62
14156748--14156863	36	3.2	36	79	4	128	51	17	15	15	1.76
14157345--14157422	28	2.9	28	80	3	88	28	8	23	39	1.84
14173520--14173591	3	24.0	3	85	0	99	29	2	4	63	1.27
14174784--14174819	18	2.0	18	88	0	54	50	5	11	33	1.61
14176827--14177320	145	3.4	142	77	8	408	41	12	12	32	1.82
14180205--14180571	143	2.6	143	83	6	424	41	12	14	31	1.83
14185579--14185629	23	2.2	24	82	6	61	68	11	13	5	1.37
14202310--14202436	64	2.0	64	95	0	227	27	14	13	44	1.83
14205942--14206020	39	2.1	39	90	2	124	53	16	3	26	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14210847--14210871	7	3.6	7	100	0	50	88	0	12	0	0.53
14215331--14215363	17	1.9	17	93	0	57	27	9	6	57	1.53
14222826--14222850	11	2.3	11	100	0	50	0	44	0	56	0.99
14230273--14230308	18	2.1	16	90	10	54	0	0	11	88	0.50
14230563--14230619	18	3.1	18	85	7	53	22	10	19	47	1.80
14230760--14230893	72	1.9	72	81	9	166	41	14	15	27	1.87
14230756--14230970	89	2.4	88	83	3	272	42	13	13	30	1.83
14230835--14230949	17	6.6	17	67	13	63	44	13	11	31	1.78
14233337--14233361	8	3.1	8	100	0	50	36	0	24	40	1.55
14239634--14239714	21	3.7	22	76	11	58	48	16	2	33	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133