genome.fa.s645.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  82  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16116405--16116603	102	2.0	100	84	3	256	33	12	20	33	1.90
16116507--16116759	85	3.0	86	83	1	312	34	14	18	32	1.91
16118042--16118082	16	2.9	15	83	16	52	12	2	12	73	1.20
16118197--16118241	18	2.4	18	82	13	56	6	2	4	86	0.76
16118342--16118387	24	1.9	24	86	0	65	52	2	23	21	1.58
16119067--16119115	19	2.5	19	90	6	71	10	8	2	79	1.01
16123184--16123223	3	13.3	3	89	0	62	35	27	0	37	1.57
16123184--16123223	15	2.7	15	100	0	80	35	27	0	37	1.57
16125706--16125844	36	3.7	36	81	11	129	10	21	7	60	1.54
16125743--16125866	39	3.2	41	78	10	138	9	24	6	59	1.52
16125705--16125864	74	2.1	73	82	11	182	9	22	7	60	1.52
16126446--16126844	145	2.7	144	87	1	539	40	12	15	32	1.84
16131979--16132017	20	2.0	20	85	10	53	35	0	5	58	1.20
16132638--16132671	12	2.8	12	90	4	50	2	17	0	79	0.86
16133079--16133228	66	2.3	67	80	12	175	47	16	18	18	1.83
16133107--16133246	66	2.1	66	84	2	174	46	17	17	18	1.84
16133217--16133396	64	2.8	64	78	2	173	42	10	22	24	1.84
16133662--16133923	64	4.1	65	77	4	192	41	11	23	23	1.87
16133797--16133930	65	2.1	65	78	4	146	44	11	21	21	1.84
16133899--16134076	67	2.7	67	78	8	175	51	10	19	19	1.75
16134263--16134337	17	4.3	17	74	5	60	29	13	14	42	1.84
16142261--16142391	68	1.9	68	84	6	176	41	12	6	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16146412--16146440	14	2.1	14	93	6	51	51	0	6	41	1.28
16153950--16154003	17	3.4	17	72	15	51	27	1	11	59	1.42
16154260--16154299	21	1.9	21	84	0	53	40	20	5	35	1.74
16158440--16158488	21	2.4	21	86	10	66	18	34	2	44	1.61
16158440--16158488	20	2.4	20	86	10	64	18	34	2	44	1.61
16158421--16158506	21	4.1	21	70	16	63	22	38	3	36	1.71
16162821--16162902	5	15.8	5	74	20	55	76	1	18	3	0.99
16162842--16162906	6	10.3	6	75	21	53	80	1	16	1	0.88
16162783--16162868	35	2.4	35	80	7	93	70	0	19	9	1.13
16162835--16162870	13	2.8	13	91	8	56	77	0	16	5	0.94
16162842--16162902	19	3.3	18	79	9	61	80	1	16	1	0.88
16162842--16162896	13	4.2	13	81	6	58	81	1	14	1	0.85
16162842--16162894	19	2.9	18	86	5	63	81	1	15	1	0.87
16162821--16162901	12	6.0	13	70	18	51	77	1	17	3	0.97
16164453--16164636	87	2.1	87	89	2	280	28	14	17	39	1.89
16165004--16165037	10	3.3	10	91	4	50	85	0	14	0	0.60
16165470--16165683	32	6.7	31	77	6	187	30	13	19	37	1.89
16165501--16165685	96	1.9	97	81	3	221	29	14	18	36	1.91
16165911--16165985	33	2.3	32	81	2	87	28	18	18	34	1.95
16166320--16166425	46	2.3	46	88	0	149	35	11	12	40	1.79
16166320--16166446	46	2.8	46	84	2	130	35	12	12	39	1.81
16166459--16166637	46	3.9	45	81	7	209	32	10	17	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16166459--16166631	92	1.9	92	88	7	262	34	10	16	38	1.83
16166470--16166661	46	4.2	46	78	6	165	32	9	18	39	1.83
16166671--16166714	6	7.7	6	85	10	65	84	15	0	0	0.63
16166670--16166715	11	4.0	11	83	8	56	82	17	0	0	0.67
16166670--16166714	17	2.6	17	86	13	74	82	17	0	0	0.68
16177970--16178010	8	5.1	8	80	19	50	75	9	2	12	1.13
16177970--16178004	17	2.1	17	89	10	54	77	8	2	11	1.10
16185636--16185768	61	2.2	61	82	8	155	42	16	2	39	1.61
16185920--16186200	125	2.2	123	80	9	300	46	9	3	40	1.53
16186280--16186472	61	3.2	59	81	10	210	38	12	3	45	1.58
16186327--16186565	61	3.9	60	76	12	207	41	14	2	41	1.59
16186791--16186834	21	2.0	22	86	4	63	50	0	0	50	1.00
16190202--16190236	18	2.0	18	88	5	54	60	2	0	37	1.12
16192737--16192761	11	2.3	11	100	0	50	44	0	0	56	0.99
16192786--16192834	17	2.8	17	96	3	89	42	0	0	57	0.99
16194559--16194686	63	2.0	63	92	0	211	35	12	13	39	1.82
16195113--16195161	22	2.2	22	96	0	89	34	14	2	48	1.55
16201088--16201136	27	1.9	25	88	12	73	36	8	10	44	1.68
16208095--16208144	16	3.1	17	71	8	50	38	12	12	38	1.80
16209896--16209932	18	2.0	20	84	10	51	70	2	2	24	1.14
16212994--16213039	17	2.8	16	87	6	65	23	10	6	58	1.55
16212994--16213042	16	3.0	16	88	5	71	26	10	6	57	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16214529--16214577	9	5.2	9	80	9	53	14	2	4	79	0.97
16214592--16214782	102	1.9	103	84	3	260	39	10	9	40	1.72
16222771--16222910	31	4.5	31	75	6	113	35	18	22	24	1.96
16223009--16223081	31	2.4	31	86	2	94	39	19	20	20	1.92
16223135--16223214	31	2.6	30	80	4	88	40	15	20	25	1.90
16223010--16223223	62	3.5	60	73	13	184	38	16	19	25	1.92
16223231--16223433	51	4.1	51	77	9	186	29	11	9	49	1.71
16223472--16223575	49	2.1	49	84	7	131	27	16	12	43	1.84
16225798--16225836	7	5.7	7	87	6	62	41	41	0	17	1.50
16225805--16225829	13	1.9	13	100	0	50	40	40	0	20	1.52
16225798--16225843	20	2.3	20	96	0	83	43	36	0	19	1.51
16225848--16225895	19	2.5	19	93	0	78	45	29	0	25	1.53
16230086--16230117	15	2.1	15	100	0	64	21	25	18	34	1.96
16231140--16231266	52	2.4	53	84	6	159	31	15	14	37	1.89
16231175--16231297	52	2.3	52	81	8	131	34	17	13	34	1.88
16234681--16234714	3	11.3	3	100	0	68	67	0	0	32	0.91
16247930--16248627	236	3.0	232	82	5	850	47	11	8	32	1.69
16250093--16250128	2	18.0	2	100	0	72	50	0	0	50	1.00
16250231--16250275	23	2.0	23	86	0	63	20	6	2	71	1.20
16250243--16250292	20	2.6	19	84	12	66	20	4	2	74	1.08
16250241--16250290	26	1.9	26	87	0	73	22	4	2	72	1.12
16250335--16250366	7	4.7	7	96	3	57	31	0	9	59	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16250334--16250392	13	4.5	13	79	12	59	30	0	6	62	1.21
16250488--16250524	19	1.9	19	94	0	65	45	10	13	29	1.77
16250759--16250959	36	5.6	36	74	9	140	50	15	17	16	1.79
16251371--16251400	14	2.1	14	100	0	60	43	6	0	50	1.28
16255289--16255313	9	2.8	9	100	0	50	68	8	0	24	1.16
16258738--16258781	19	2.3	19	88	0	70	40	0	2	56	1.11
16260753--16260804	17	3.1	17	78	13	63	9	13	5	71	1.30
16266751--16266794	21	2.1	21	100	0	88	27	9	22	40	1.84
16267326--16267486	34	4.7	34	74	5	110	40	6	13	39	1.70
16267369--16267489	17	7.1	17	70	1	73	38	7	13	41	1.72
16267606--16267877	45	6.0	45	71	9	187	45	13	7	33	1.72
16267595--16267762	90	1.9	90	83	5	223	45	14	6	33	1.70
16267606--16267758	23	6.8	23	72	9	127	45	14	5	34	1.69
16268916--16268981	6	10.7	6	74	22	57	13	13	1	71	1.22
16268950--16268984	7	5.0	7	89	10	54	14	14	0	71	1.15
16268950--16269006	14	3.9	15	72	19	57	14	15	0	70	1.18
16268929--16269005	30	2.5	31	83	4	86	12	16	0	70	1.17
16269442--16269472	2	15.5	2	100	0	62	0	48	0	51	1.00
16278067--16278093	2	13.5	2	100	0	54	51	0	0	48	1.00
16284109--16284172	31	2.1	31	84	0	92	43	1	12	42	1.52
16285382--16285428	20	2.3	20	85	3	67	29	4	27	38	1.76
16285382--16285429	21	2.3	21	82	10	64	31	4	27	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16287362--16287490	49	2.5	50	82	8	163	42	18	7	31	1.79
16287855--16287938	32	2.6	31	81	5	87	5	20	2	71	1.18
16290396--16290495	36	2.7	37	78	9	89	33	13	25	29	1.93
16292203--16292259	29	2.0	29	100	0	114	24	3	14	57	1.52
16293967--16294002	14	2.5	15	86	9	56	25	11	16	47	1.79
16294005--16294046	19	2.2	20	86	4	59	23	14	4	57	1.56
16299122--16299178	20	2.8	21	84	7	64	42	15	12	29	1.84
16300976--16301020	22	2.0	22	83	8	56	6	15	6	71	1.29
16308878--16308918	19	2.2	19	91	4	66	29	12	9	48	1.72
16317591--16317635	18	2.5	18	82	7	56	0	15	4	80	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133