genome.fa.s645.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  41  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9026616--9026692	5	14.6	5	71	10	55	58	0	1	40	1.06
9026609--9026674	16	3.9	16	80	19	80	57	0	0	42	0.98
9026616--9026663	21	2.3	21	96	0	87	60	0	0	39	0.97
9034595--9034629	9	4.0	9	96	3	63	42	0	0	57	0.99
9041770--9041813	23	1.9	23	95	0	79	31	13	13	40	1.84
9043043--9043359	18	17.3	19	72	11	173	49	11	11	27	1.73
9043598--9043640	20	2.1	21	87	12	63	55	13	4	25	1.58
9043416--9043779	202	1.8	202	85	2	525	47	11	9	31	1.72
9043756--9043828	18	4.2	18	75	18	64	49	8	12	30	1.69
9043937--9044104	43	3.7	45	80	10	155	49	14	8	27	1.72
9043988--9044190	43	4.7	44	77	10	193	46	16	8	28	1.76
9045607--9045654	21	2.3	21	85	0	60	10	10	0	79	0.95
9045625--9045663	21	1.9	20	89	5	60	7	5	2	84	0.84
9045963--9045996	16	2.1	16	89	10	52	11	11	0	76	1.02
9049153--9049199	23	2.0	23	95	0	85	63	4	6	25	1.36
9050420--9050501	4	20.5	4	80	9	78	73	6	1	19	1.11
9050420--9050501	16	5.1	16	82	4	94	73	6	1	19	1.11
9050888--9050935	24	2.0	24	83	0	60	12	10	6	70	1.32
9051018--9051065	25	1.9	25	83	8	62	31	16	4	47	1.65
9057477--9057515	19	2.1	19	85	4	53	25	5	10	58	1.51
9071533--9071566	11	3.1	11	87	12	52	26	0	26	47	1.53
9071577--9071732	52	3.0	52	86	6	194	40	8	25	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9076530--9076575	23	2.0	23	100	0	92	56	17	4	21	1.58
9080212--9080270	30	2.0	30	87	12	86	16	0	1	81	0.78
9080217--9080271	18	3.1	18	87	12	78	16	0	1	81	0.77
9080213--9080275	26	2.5	26	87	7	85	19	0	1	79	0.82
9080214--9080275	8	7.4	8	75	21	56	19	0	1	79	0.82
9080493--9080539	14	3.5	13	80	11	51	4	0	8	87	0.67
9080507--9080539	14	2.3	14	94	5	57	6	0	6	87	0.65
9081190--9081232	22	2.0	22	81	9	52	48	0	2	48	1.14
9081291--9081389	50	2.0	50	88	4	146	48	8	0	43	1.32
9085242--9085388	52	2.8	51	83	4	168	27	25	7	40	1.82
9085689--9085802	25	4.6	25	75	12	101	23	34	5	36	1.78
9086008--9086140	24	5.5	24	77	7	110	21	31	7	39	1.81
9086022--9086140	49	2.4	48	77	12	125	22	30	7	39	1.82
9086671--9086826	52	3.0	52	83	3	181	26	24	9	39	1.86
9086852--9086904	11	4.8	11	90	0	79	49	26	0	24	1.51
9088436--9088465	10	3.0	10	90	0	51	46	0	0	53	1.00
9091567--9091605	16	2.4	16	78	0	51	82	0	12	5	0.83
9091998--9092060	31	2.2	31	78	13	73	39	3	3	53	1.33
9092047--9092110	31	2.0	32	82	8	78	51	4	0	43	1.22
9096187--9096233	25	2.0	24	84	16	62	40	17	6	36	1.75
9099699--9099967	57	4.6	57	88	5	398	34	14	8	42	1.77
9100001--9100040	17	2.3	17	86	4	53	82	0	7	10	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9100006--9100058	23	2.2	25	86	6	74	81	3	5	9	0.98
9100592--9100651	31	2.0	30	83	3	75	26	20	28	25	1.99
9100669--9100716	25	1.9	25	87	8	71	41	18	8	31	1.80
9101470--9101561	1	92.0	1	84	0	121	0	0	7	92	0.39
9101470--9101562	15	6.4	15	92	6	138	0	0	8	91	0.42
9101570--9102229	41	15.9	41	89	5	821	39	21	16	22	1.92
9101570--9102229	124	5.3	120	84	10	807	39	21	16	22	1.92
9101925--9101989	21	3.1	21	100	0	130	36	15	13	33	1.87
9102763--9102796	12	2.8	12	90	0	59	50	17	0	32	1.47
9103480--9103554	8	9.6	8	77	11	57	6	14	0	78	0.94
9107368--9107634	57	4.6	57	88	6	394	34	14	8	42	1.76
9107669--9107736	18	3.8	18	72	5	57	79	2	5	11	1.02
9107674--9107727	24	2.2	25	86	3	74	81	3	5	9	0.97
9107682--9107743	11	5.9	11	79	9	51	80	3	4	11	0.98
9108155--9108201	20	2.4	20	89	3	69	25	21	25	27	1.99
9108214--9108251	20	1.9	20	100	0	76	7	21	34	36	1.82
9108273--9108343	31	2.3	31	80	4	81	25	22	28	23	2.00
9110381--9110523	52	2.7	51	79	4	160	27	21	7	42	1.80
9110550--9110592	11	3.8	11	81	6	59	53	27	0	18	1.45
9111555--9111602	2	24.5	2	95	4	89	50	0	0	50	1.00
9113694--9113945	125	2.0	125	100	0	504	23	21	23	32	1.98
9116142--9116170	1	29.0	1	100	0	58	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9118582--9118606	6	4.2	6	100	0	50	48	52	0	0	1.00
9119994--9120022	13	2.3	13	94	5	51	44	0	3	51	1.18
9120041--9120075	18	1.9	18	88	0	52	25	11	5	57	1.56
9120137--9120167	16	1.9	16	93	0	53	25	6	6	61	1.45
9125756--9125780	6	4.2	6	100	0	50	48	52	0	0	1.00
9126008--9126135	55	2.4	53	84	8	154	28	25	8	36	1.86
9127316--9127346	16	1.9	16	93	0	53	25	6	6	61	1.45
9132930--9132954	6	4.2	6	100	0	50	48	52	0	0	1.00
9133182--9133311	57	2.4	55	83	8	151	28	25	8	37	1.85
9134341--9134369	13	2.3	13	94	5	51	44	0	3	51	1.18
9134388--9134422	18	1.9	18	88	0	52	25	11	5	57	1.56
9134485--9134515	16	1.9	16	93	0	53	25	6	6	61	1.45
9137680--9137706	1	27.0	1	100	0	54	0	0	0	100	0.00
9140115--9140139	6	4.2	6	100	0	50	48	52	0	0	1.00
9140367--9140496	57	2.4	55	83	8	151	28	25	8	37	1.85
9141525--9141553	13	2.3	13	94	5	51	44	0	3	51	1.18
9141572--9141606	18	1.9	18	88	0	52	25	11	5	57	1.56
9141668--9141698	16	1.9	16	93	0	53	25	6	6	61	1.45
9145418--9145443	13	2.0	13	100	0	52	15	0	0	84	0.62
9145455--9145604	3	47.7	3	71	17	58	30	4	0	65	1.16
9145456--9145592	16	8.7	16	68	21	60	31	4	0	63	1.19
9145477--9145529	28	1.9	28	88	3	81	37	3	0	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9145502--9145598	49	2.0	50	83	6	126	27	4	1	67	1.16
9145537--9145628	6	15.0	6	78	8	69	19	3	3	73	1.10
9146387--9146501	3	39.0	3	70	16	80	26	0	3	68	1.11
9146462--9146504	17	2.5	18	92	7	72	16	2	0	81	0.79
9146391--9146503	11	9.8	11	78	12	68	25	0	3	69	1.10
9146524--9146683	57	2.8	58	91	2	259	43	3	12	40	1.60
9156779--9156829	9	5.9	8	78	17	57	80	0	13	5	0.89
9156774--9156825	27	2.0	26	85	14	72	76	0	15	7	0.99
9156779--9156829	18	2.9	17	85	8	75	80	0	13	5	0.89
9157914--9158427	44	11.7	47	78	11	288	22	13	18	44	1.85
9157967--9158461	44	11.4	44	81	6	460	23	13	18	44	1.85
9157967--9158462	86	5.7	87	80	7	492	23	13	19	44	1.85
9158674--9158723	22	2.2	23	89	3	75	42	4	0	54	1.19
9158731--9158803	3	22.7	3	76	18	67	28	5	0	65	1.14
9158727--9158803	20	3.9	20	93	1	120	28	5	0	66	1.13
9158719--9158824	6	16.2	6	73	14	50	24	5	0	69	1.09
9158710--9158815	20	4.9	21	76	19	78	28	4	0	66	1.11
9159624--9159678	5	10.4	5	81	14	58	18	3	0	78	0.90
9159618--9159678	11	5.5	11	78	18	65	18	4	0	77	0.95
9159618--9159673	6	9.8	6	82	9	57	17	5	0	76	0.96
9159696--9159975	59	4.8	58	87	2	362	45	6	9	37	1.64
9159696--9159970	117	2.3	119	86	2	376	46	6	9	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9163147--9163182	17	2.1	17	89	0	54	25	8	5	61	1.46
9164370--9164395	12	2.2	12	100	0	52	46	0	11	42	1.40
9166161--9166211	25	2.0	27	84	7	70	39	0	0	60	0.97
9166541--9166574	18	2.0	16	88	11	50	35	0	5	58	1.22
9166792--9166864	22	3.3	22	78	0	74	45	1	10	42	1.48
9166967--9167051	22	3.9	22	82	0	107	47	4	8	40	1.54
9166960--9167055	44	2.2	44	88	0	138	50	5	7	37	1.53
9167018--9167083	22	3.0	23	78	8	75	46	4	6	42	1.48
9167081--9167134	11	4.9	11	80	8	56	59	3	3	33	1.33
9167081--9167266	22	8.5	22	70	9	78	51	6	6	35	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133