genome.fa.s645.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  48  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10256777--10256828	26	2.1	24	82	7	59	32	3	7	55	1.46
10256777--10256828	25	2.1	24	82	3	59	32	3	7	55	1.46
10257331--10257380	18	2.9	18	83	13	54	26	0	0	74	0.83
10257406--10257471	22	3.0	23	82	12	68	18	6	0	75	1.00
10257412--10257476	5	12.4	5	81	12	69	18	4	0	76	0.95
10257494--10257651	59	2.7	58	87	6	230	43	5	13	37	1.68
10264778--10264815	19	2.0	19	85	10	51	31	0	5	63	1.17
10264833--10264897	5	12.4	5	78	12	60	16	3	0	80	0.85
10264827--10264892	11	5.9	11	81	15	82	16	4	0	78	0.90
10264836--10264902	17	3.9	16	84	11	80	16	4	0	79	0.90
10264827--10264892	23	2.9	22	84	10	80	16	4	0	78	0.90
10264829--10264902	23	3.4	22	74	20	66	16	5	0	78	0.93
10264913--10265080	60	2.8	60	86	1	228	42	5	12	39	1.65
10266072--10266112	21	2.0	20	86	13	57	34	2	9	53	1.47
10273617--10273651	12	2.8	12	86	4	52	80	8	2	8	1.01
10275219--10275517	145	2.1	143	84	5	379	34	16	10	38	1.83
10275949--10275985	16	2.3	17	81	13	51	81	0	10	8	0.89
10275953--10275985	15	2.1	16	88	5	50	81	0	9	9	0.87
10276049--10276211	60	2.8	59	94	1	274	38	12	5	42	1.67
10276277--10276320	6	7.2	6	80	14	54	79	0	0	20	0.73
10276274--10276327	18	3.1	17	78	19	58	77	0	1	20	0.86
10276274--10276329	27	2.1	27	83	12	71	78	0	1	19	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10277035--10277154	18	7.1	16	71	13	64	63	3	3	30	1.27
10277010--10277073	20	3.1	20	78	8	74	64	0	7	28	1.21
10277037--10277163	35	3.6	35	75	9	116	62	3	3	30	1.26
10277100--10277161	4	15.0	4	78	18	65	67	0	1	30	1.00
10277019--10277156	34	4.3	31	74	13	109	63	2	4	29	1.28
10277046--10277157	7	16.1	7	66	22	58	63	3	2	30	1.25
10277138--10277199	22	3.0	21	79	6	56	69	3	1	25	1.13
10277382--10277490	45	2.5	44	81	10	129	36	22	16	23	1.94
10277466--10277517	27	1.9	27	100	0	104	30	30	19	19	1.96
10277490--10277769	43	6.5	43	79	8	243	42	20	13	24	1.87
10277490--10277750	88	3.0	85	77	13	253	43	19	12	24	1.85
10277490--10277769	131	2.2	130	82	7	329	42	20	13	24	1.87
10277671--10277785	40	2.8	40	85	3	142	40	22	12	24	1.88
10281233--10281258	13	2.0	13	100	0	52	30	15	15	38	1.88
10289131--10289163	15	2.1	16	94	5	59	75	0	12	12	1.04
10289135--10289169	15	2.4	14	86	13	52	77	0	14	8	0.99
10289229--10289391	59	2.7	60	91	0	265	40	13	5	40	1.68
10289420--10289489	18	3.8	18	70	10	52	65	4	1	28	1.20
10289459--10289498	14	2.9	15	85	10	50	70	0	0	30	0.88
10289913--10289963	25	2.0	26	84	7	68	54	11	1	31	1.47
10290272--10290343	17	3.9	18	81	9	74	63	0	5	30	1.17
10290303--10290431	14	8.9	14	69	18	77	63	4	2	29	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10290303--10290431	7	17.4	7	68	19	59	63	4	2	29	1.27
10290411--10290474	24	2.5	26	77	12	78	71	4	3	20	1.17
10290988--10291021	12	2.8	12	86	13	52	73	0	26	0	0.83
10291029--10291090	25	2.5	25	73	5	63	59	4	25	9	1.49
10296659--10296698	21	1.9	21	84	0	53	37	2	0	60	1.11
10296674--10296706	16	2.1	16	94	0	57	36	3	0	60	1.12
10297041--10297110	29	2.4	28	79	9	70	57	5	1	35	1.32
10301445--10301473	2	15.0	2	92	7	51	51	0	0	48	1.00
10302797--10302883	23	3.6	22	71	24	68	31	10	3	55	1.50
10302798--10302899	50	2.0	50	94	0	177	31	13	2	51	1.56
10302821--10302899	24	3.1	27	67	20	78	30	16	2	50	1.58
10304779--10304810	2	16.0	2	100	0	64	50	0	0	50	1.00
10311108--10311163	27	2.1	27	86	0	76	37	8	8	44	1.67
10313296--10313348	21	2.5	21	81	6	63	52	0	3	43	1.19
10320973--10321046	33	2.2	34	90	7	116	29	16	9	44	1.79
10320915--10321056	34	4.2	33	69	7	99	37	12	8	41	1.74
10321035--10321099	34	1.9	34	83	0	85	41	9	3	46	1.51
10321226--10321264	21	1.9	20	84	5	51	35	2	12	48	1.55
10324972--10325418	238	1.9	235	83	9	577	34	11	8	44	1.72
10326605--10326672	34	2.0	33	81	13	77	20	4	4	70	1.22
10326824--10327332	97	5.3	95	86	4	646	36	20	12	29	1.90
10326803--10327332	47	11.0	47	84	4	585	35	20	12	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10326832--10327335	195	2.6	191	87	5	617	36	20	12	30	1.90
10340256--10340298	22	2.0	22	86	9	61	6	2	9	81	0.95
10341058--10341516	235	2.0	234	80	10	508	35	11	7	45	1.68
10342644--10342690	18	2.6	18	80	10	51	25	4	4	65	1.29
10343398--10343432	15	2.4	15	90	4	54	25	0	5	68	1.11
10343816--10343955	72	1.9	72	82	2	174	46	7	8	37	1.64
10348108--10348166	27	2.2	27	87	6	84	61	22	13	3	1.47
10359416--10359457	16	2.5	17	81	14	52	11	0	4	83	0.79
10359510--10359535	7	3.7	7	100	0	52	73	0	0	26	0.84
10359860--10359919	26	2.3	27	82	2	68	81	10	3	5	0.95
10361244--10361321	31	2.5	32	89	8	124	76	10	1	11	1.07
10361782--10361828	24	2.0	24	82	0	58	72	19	0	8	1.10
10363916--10363940	2	12.5	2	100	0	50	48	0	0	52	1.00
10371457--10371552	51	1.9	50	85	6	131	39	15	12	32	1.85
10381407--10381462	16	3.6	15	81	13	60	73	3	0	23	0.99
10384827--10384912	38	2.3	38	81	0	100	19	11	30	38	1.88
10388489--10388558	27	2.6	27	86	6	97	18	31	11	38	1.86
10389366--10389598	3	81.7	3	70	18	124	32	3	3	60	1.32
10389379--10389598	16	12.6	17	72	16	148	32	2	4	60	1.30
10389396--10389598	8	23.5	8	72	18	117	33	2	3	60	1.29
10389396--10389597	5	40.2	5	73	17	84	33	2	3	59	1.29
10389562--10389613	11	4.6	11	83	11	52	25	1	0	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10390426--10390450	13	1.9	13	100	0	50	16	0	4	80	0.87
10390427--10390487	15	4.1	15	76	12	54	16	1	6	75	1.09
10400816--10400866	17	3.1	17	78	13	61	86	7	1	3	0.77
10402223--10402471	3	85.3	3	70	16	105	31	4	4	58	1.40
10402231--10402467	11	22.2	10	66	23	60	31	4	5	58	1.40
10402246--10402345	5	19.8	5	76	13	71	36	1	6	57	1.30
10402232--10402342	43	2.6	43	85	7	145	34	1	6	57	1.34
10402281--10402342	8	7.4	8	75	20	56	35	0	4	59	1.19
10402348--10403864	763	2.0	756	93	4	2601	29	8	17	44	1.78
10404014--10404067	15	3.6	16	80	9	60	22	3	3	70	1.19
10404035--10404104	25	2.7	26	80	10	65	20	5	5	68	1.31
10404486--10404525	13	3.0	13	85	3	53	25	2	0	72	0.97
10404505--10404561	23	2.4	23	82	2	69	21	7	0	71	1.08
10406371--10406404	15	2.3	15	89	0	50	61	8	2	26	1.40
10407039--10407078	19	2.1	19	85	0	53	60	0	2	37	1.11
10407720--10407778	16	3.6	16	82	11	75	55	6	1	35	1.36
10408445--10408475	3	10.3	3	92	0	53	35	32	0	32	1.58
10415765--10415793	14	2.0	15	93	6	51	0	0	37	62	0.96
10417206--10417268	31	2.0	31	96	0	117	53	6	14	25	1.64
10419253--10419289	19	1.9	19	88	0	56	54	24	10	10	1.67
10425014--10425088	24	3.2	24	85	9	93	52	13	4	30	1.59
10425023--10425093	24	3.0	24	89	4	99	49	15	4	30	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10425113--10425166	12	4.5	11	79	11	54	55	9	5	29	1.54
10425093--10425154	23	2.6	25	80	19	78	56	9	4	29	1.52
10425149--10425213	24	2.7	24	88	4	96	52	7	6	33	1.55
10425096--10425276	60	3.0	60	79	12	167	51	9	6	32	1.60
10425107--10425312	83	2.5	79	73	15	195	51	9	6	32	1.60
10425106--10425324	20	10.6	19	67	23	90	52	9	5	32	1.58
10425166--10425281	62	1.9	60	87	7	171	50	9	6	32	1.61
10425107--10425324	40	5.3	40	72	19	162	51	9	5	32	1.59
10429238--10429280	21	2.0	22	81	4	52	32	25	20	20	1.97
10429391--10429433	14	3.1	14	86	6	61	18	13	6	60	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133