genome.fa.s645.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  101  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19708859--19708906	24	2.0	24	84	8	62	47	4	8	39	1.53
19714681--19714714	7	4.9	7	86	13	52	14	0	29	55	1.40
19726635--19726675	21	1.9	22	95	5	75	29	12	17	41	1.85
19746696--19746740	24	1.9	24	90	4	74	44	15	8	31	1.77
19747316--19747376	30	2.1	29	82	8	72	55	16	16	11	1.68
19749906--19750199	150	2.0	148	86	2	410	41	15	10	31	1.82
19753149--19753196	11	4.2	11	76	10	51	58	0	0	41	0.98
19753144--19753192	24	2.0	24	84	0	62	53	2	0	44	1.12
19755431--19755477	15	3.1	15	74	20	53	46	0	2	51	1.13
19755885--19756006	63	1.9	63	83	6	158	40	3	3	52	1.34
19755887--19756005	32	3.8	31	80	8	134	40	3	3	52	1.34
19756078--19756136	30	1.9	31	82	3	75	61	0	0	38	0.96
19756546--19756583	20	2.0	20	84	5	51	57	0	0	42	0.98
19756546--19756588	21	2.1	20	82	4	50	60	0	0	39	0.97
19756930--19756992	19	3.2	19	84	8	90	55	0	0	44	0.99
19757568--19758295	367	2.0	368	87	3	1054	34	23	15	25	1.95
19760902--19760941	21	1.9	21	84	0	53	32	0	22	45	1.53
19762271--19762334	29	2.3	28	81	13	78	51	1	1	45	1.20
19766168--19766209	22	1.9	22	85	9	59	76	4	4	14	1.12
19767093--19767149	17	3.2	17	77	20	55	75	5	3	15	1.12
19767398--19767442	22	2.0	23	82	8	56	75	4	4	15	1.12
19767034--19767600	287	2.0	285	94	2	994	47	7	7	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19768300--19768330	15	2.1	15	93	0	53	45	12	16	25	1.83
19770669--19771005	164	2.1	164	96	0	620	31	5	18	43	1.74
19773714--19773765	25	2.1	24	89	3	77	17	15	11	55	1.68
19777157--19778281	555	2.0	554	87	2	1630	41	14	9	34	1.78
19780939--19782308	370	3.7	368	80	4	1439	28	20	28	22	1.99
19785281--19785382	41	2.5	42	78	9	115	42	19	8	29	1.81
19785740--19785774	18	1.9	18	94	0	61	25	14	14	45	1.82
19786378--19786449	35	2.1	35	89	2	110	37	15	6	40	1.74
19788330--19788372	22	2.0	22	95	0	77	37	11	6	44	1.68
19790518--19790855	178	1.9	176	87	1	496	36	17	13	32	1.89
19792497--19792538	22	1.9	22	85	9	59	33	19	11	35	1.88
19796679--19796730	23	2.3	23	93	3	88	36	5	3	53	1.43
19796686--19796734	23	2.1	23	100	0	98	40	4	4	51	1.40
19796694--19796742	23	2.4	20	83	16	57	32	6	2	59	1.34
19803892--19805373	737	2.0	737	99	0	2955	31	16	18	33	1.93
19808204--19808256	25	2.1	26	82	10	65	49	0	0	50	1.00
19808217--19808248	16	1.9	17	93	6	57	53	0	0	46	1.00
19809050--19809090	19	2.1	19	86	4	55	51	2	0	46	1.14
19809246--19809296	17	3.1	17	81	18	63	60	5	1	31	1.31
19809393--19809426	18	1.9	17	88	5	50	67	5	0	26	1.13
19824673--19824725	21	2.6	21	94	5	92	50	0	0	49	1.00
19824698--19824754	30	1.9	30	85	0	78	52	3	0	43	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19825580--19825622	23	2.0	21	86	9	59	16	0	9	74	1.06
19834092--19834193	13	7.9	13	67	20	63	49	30	0	19	1.55
19834090--19834224	7	21.2	6	69	24	66	48	32	0	18	1.54
19834156--19834224	19	3.6	19	84	9	86	47	33	0	18	1.49
19834214--19834287	26	2.8	26	85	0	103	44	33	4	17	1.68
19834307--19834351	13	3.5	13	81	6	56	48	17	0	33	1.48
19838053--19838086	17	1.9	18	88	5	52	61	0	17	20	1.34
19844837--19844892	29	1.9	29	88	0	85	33	17	7	41	1.77
19854933--19854981	17	2.8	17	81	3	53	26	2	6	65	1.27
19855454--19855525	34	2.2	33	82	7	83	45	2	6	44	1.45
19862124--19862196	32	2.2	33	86	13	98	28	13	9	47	1.74
19864649--19864690	21	1.9	23	85	9	61	38	2	4	54	1.34
19864739--19864772	17	1.9	17	88	5	50	47	0	2	50	1.16
19864937--19865003	20	3.5	20	71	21	61	61	2	4	31	1.31
19864939--19864995	17	3.1	18	76	14	62	61	3	3	31	1.30
19864941--19865001	19	3.2	18	75	9	59	62	3	4	29	1.32
19866011--19866077	23	3.0	22	85	8	75	53	5	0	40	1.25
19874571--19874609	21	1.9	21	89	5	62	56	2	7	33	1.41
19874644--19874724	42	1.9	42	85	7	110	50	2	3	43	1.33
19876504--19876543	22	1.9	22	85	10	57	47	0	5	47	1.24
19877287--19877330	19	2.3	19	81	11	54	29	2	0	68	1.02
19877315--19877356	23	1.9	23	85	9	61	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19878437--19878485	21	2.3	20	82	6	53	59	2	14	24	1.46
19879892--19879982	44	2.1	44	100	0	182	45	6	15	32	1.72
19886908--19886981	34	2.1	35	87	7	107	45	9	5	39	1.59
19886916--19886995	34	2.4	34	85	4	99	47	6	5	41	1.50
19887068--19887107	20	2.0	20	85	9	55	72	2	25	0	0.97
19893417--19893446	10	3.0	10	95	0	51	43	0	6	50	1.28
19894343--19894391	15	3.3	15	82	0	62	65	16	2	16	1.37
19898482--19898582	50	2.0	50	88	0	148	36	26	20	15	1.93
19904914--19905109	62	3.2	61	80	5	200	31	13	14	41	1.84
19906873--19906919	3	15.7	3	100	0	94	65	0	0	34	0.93
19907398--19907443	19	2.4	19	89	7	67	41	30	13	15	1.85
19907769--19907837	34	2.0	34	85	0	93	28	10	18	42	1.83
19916975--19917065	40	2.3	40	100	0	182	28	7	24	39	1.83
19916998--19917065	24	3.2	24	61	30	62	29	8	23	38	1.85
19920333--19921139	306	2.6	305	80	7	798	37	14	12	35	1.84
19926416--19926726	153	2.0	153	95	0	559	39	12	10	37	1.77
19927177--19927490	49	6.4	48	79	7	301	46	13	9	30	1.75
19927180--19927473	148	2.0	147	85	4	396	46	12	9	31	1.74
19927535--19927595	31	2.0	31	83	0	77	27	22	13	36	1.92
19927931--19927973	7	6.0	7	78	5	50	2	16	2	79	0.95
19932108--19932146	20	1.9	20	89	5	60	58	5	35	0	1.20
19933402--19933447	14	3.3	14	80	17	51	73	0	4	21	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19933594--19933665	19	3.8	19	86	0	108	40	26	11	22	1.87
19935445--19935688	123	2.0	123	93	0	416	38	11	6	43	1.68
19936151--19936199	20	2.5	19	80	9	62	26	8	20	44	1.79
19936234--19936287	25	2.2	24	83	9	65	14	1	22	61	1.43
19936234--19936287	12	4.4	13	83	6	60	14	1	22	61	1.43
19936390--19936496	50	2.3	46	81	13	128	30	8	0	60	1.26
19936470--19936503	10	3.5	10	84	8	52	26	2	0	70	1.01
19936470--19936509	19	2.2	18	91	8	64	25	2	0	72	0.97
19945467--19945792	102	3.2	100	82	5	379	46	8	7	37	1.63
19945467--19945744	101	2.8	100	85	4	373	47	8	7	37	1.62
19946939--19946977	8	4.9	8	87	0	60	23	20	12	43	1.86
19946939--19946977	16	2.4	16	100	0	78	23	20	12	43	1.86
19949647--19949706	10	6.1	10	77	14	54	81	1	13	3	0.89
19949665--19949706	20	2.0	20	90	4	66	80	0	16	2	0.81
19949647--19949706	29	2.0	29	84	9	77	81	1	13	3	0.89
19950690--19950815	46	2.8	46	84	6	141	37	10	12	39	1.78
19951042--19951078	19	1.9	19	94	0	65	29	13	5	51	1.63
19951083--19951146	17	3.6	17	69	8	56	35	18	6	39	1.76
19951162--19951254	19	5.1	19	72	17	81	21	10	13	53	1.70
19952468--19952705	102	2.3	100	77	7	246	43	9	10	36	1.70
19953338--19953376	19	2.0	20	85	5	53	48	5	15	30	1.66
19958520--19958546	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19960758--19960783	2	13.0	2	100	0	52	50	0	0	50	1.00
19970214--19970248	18	1.9	18	88	0	52	8	2	14	74	1.17
19970484--19970527	23	2.0	22	82	13	54	11	2	45	40	1.53
19973542--19973588	23	2.0	23	100	0	94	36	12	17	34	1.87
19978964--19979012	22	2.3	21	86	10	73	48	0	2	48	1.12
19978974--19979015	22	1.9	22	100	0	84	50	0	0	50	1.00
19980771--19980796	12	2.2	12	100	0	52	73	0	0	26	0.84
19981667--19981709	21	2.0	22	86	4	61	27	11	2	58	1.46
19984008--19984133	32	4.3	31	73	12	104	56	9	0	33	1.37
19991766--19991811	23	2.0	23	100	0	92	47	4	21	26	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133