genome.fa.s645.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  18  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4398997--4399041	24	1.9	23	86	4	63	53	0	6	40	1.27
4400044--4400108	29	2.3	29	79	12	80	24	7	13	53	1.66
4403417--4403451	18	1.9	18	88	11	54	40	5	0	54	1.24
4403639--4403720	41	2.0	41	97	0	155	45	12	10	31	1.76
4407234--4407260	12	2.2	12	100	0	54	33	40	7	18	1.78
4410172--4410309	58	2.3	59	80	9	156	20	12	5	61	1.51
4410592--4410646	25	2.2	25	87	9	76	41	5	3	49	1.43
4410714--4410752	4	10.0	4	83	5	53	71	5	0	23	1.05
4410714--4410750	19	1.9	19	88	0	56	72	5	0	21	1.04
4411927--4412045	41	2.9	41	84	0	175	44	21	12	21	1.85
4413640--4413683	14	3.6	12	82	14	54	2	9	0	88	0.59
4413642--4413684	12	3.7	12	84	12	54	2	11	0	86	0.67
4417640--4417762	55	2.2	53	83	8	156	21	12	6	60	1.54
4419255--4419697	217	2.0	218	93	3	753	45	11	12	30	1.77
4419773--4419798	2	13.0	2	100	0	52	50	0	0	50	1.00
4420653--4420717	8	7.8	9	71	25	54	16	1	3	78	0.96
4420663--4420707	24	1.9	23	86	4	63	13	2	4	80	0.97
4420653--4420715	33	1.9	33	87	6	92	15	1	3	79	0.94
4424226--4424275	13	3.3	15	73	18	50	52	2	0	46	1.12
4425070--4425107	19	2.1	18	85	14	51	31	0	2	65	1.06
4425139--4425227	33	2.7	33	85	1	117	35	4	5	53	1.45
4426064--4426112	24	2.0	24	100	0	98	34	12	16	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4434885--4435020	70	1.9	70	86	0	191	38	13	18	30	1.89
4439056--4439110	19	2.9	19	86	0	74	54	7	5	32	1.51
4439518--4439559	14	3.0	14	96	0	75	0	26	7	66	1.17
4440988--4441088	51	2.0	51	90	0	157	36	14	12	35	1.85
4440988--4441160	17	10.2	17	64	9	66	36	14	13	35	1.85
4441106--4441236	35	3.8	35	77	4	113	37	16	14	32	1.88
4441552--4441835	46	6.2	46	72	8	213	44	15	8	32	1.75
4441488--4441835	92	3.8	92	75	7	334	45	14	7	33	1.73
4441822--4442002	81	2.2	81	88	1	265	38	14	9	37	1.78
4441851--4442022	81	2.1	82	85	3	238	41	15	8	35	1.76
4442144--4442190	20	2.3	20	85	7	60	40	19	14	25	1.90
4443787--4443829	17	2.6	16	82	13	52	60	0	20	18	1.36
4447805--4447864	26	2.4	25	83	5	75	80	13	1	5	0.96
4447808--4447878	21	3.3	20	80	18	65	78	14	1	5	0.99
4458444--4458873	50	8.8	48	77	9	377	29	11	19	40	1.86
4458444--4458873	193	2.2	200	82	5	477	29	11	19	40	1.86
4459043--4459082	3	13.3	3	94	0	71	32	2	0	65	1.06
4459084--4459135	10	5.1	10	83	4	68	0	15	1	82	0.75
4460134--4460175	21	1.9	23	85	9	61	33	0	7	59	1.25
4460415--4460440	3	8.7	3	100	0	52	65	0	0	34	0.93
4463338--4463410	19	3.9	19	75	8	69	49	9	5	35	1.59
4463332--4463365	18	2.0	16	88	11	50	50	11	5	32	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4463565--4463621	29	1.9	29	85	3	78	78	8	1	10	1.02
4466827--4466856	15	2.0	15	93	0	51	50	0	0	50	1.00
4467282--4467665	177	2.2	176	91	3	630	47	12	18	20	1.81
4467636--4468348	73	9.8	73	70	12	333	47	12	19	21	1.81
4467821--4468308	37	13.3	36	66	11	125	47	11	19	21	1.80
4467821--4468308	35	13.3	37	71	13	179	47	11	19	21	1.80
4467978--4468359	147	2.6	144	74	11	364	45	12	20	20	1.84
4467824--4468347	220	2.4	220	86	2	712	47	11	19	20	1.81
4469380--4469422	10	4.7	9	83	13	52	9	2	4	83	0.87
4480742--4480782	13	3.1	14	82	6	50	36	0	26	36	1.57
4481195--4481258	35	1.9	32	81	12	76	73	3	0	23	0.97
4481470--4481533	28	2.3	28	84	10	103	23	26	15	34	1.95
4481744--4481777	11	3.0	11	91	4	50	2	11	0	85	0.71
4482171--4482218	17	3.1	15	82	14	53	37	0	0	62	0.95
4482181--4482224	17	2.6	16	86	10	61	40	0	0	59	0.98
4482177--4482226	14	3.8	14	76	15	52	44	0	0	56	0.99
4483265--4483320	16	3.7	14	77	15	58	48	0	7	44	1.30
4488791--4488861	25	2.8	25	74	19	67	33	0	0	66	0.92
4488790--4488864	4	19.5	4	69	13	50	33	0	0	66	0.92
4488841--4488888	18	2.6	18	78	15	53	33	2	2	62	1.18
4488854--4488932	24	3.5	22	87	5	104	35	7	2	54	1.42
4488853--4488960	50	2.3	46	80	7	119	38	5	2	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4505149--4505203	23	2.4	23	96	0	101	27	20	18	34	1.95
4509434--4509465	16	2.0	16	93	0	55	37	15	6	40	1.73
4510409--4510442	17	2.0	17	94	0	59	32	29	0	38	1.58
4515671--4515775	54	2.0	53	92	1	174	56	6	7	29	1.53
4517315--4517365	17	3.0	17	80	8	59	33	3	3	58	1.35
4518027--4518166	51	2.9	48	77	5	129	36	17	10	35	1.84
4518872--4519048	85	2.1	86	78	7	191	41	12	15	30	1.84
4518900--4519061	85	1.9	85	86	5	229	41	12	16	30	1.84
4520369--4520431	18	3.7	16	74	14	54	3	14	3	79	0.98
4520369--4520432	17	3.7	17	72	4	56	3	14	3	79	0.97
4520382--4520459	30	2.7	29	75	13	70	3	15	2	78	1.01
4520740--4520848	56	1.9	57	87	5	159	15	13	13	56	1.67
4524581--4524647	27	2.5	27	78	4	73	32	1	4	61	1.25
4525930--4526166	119	2.0	119	94	0	420	53	7	13	25	1.66
4526628--4526663	15	2.4	15	90	0	54	30	0	2	66	1.06
4526745--4526791	5	9.6	5	88	4	51	76	8	0	14	1.01
4526754--4526793	18	2.2	19	86	4	55	77	10	0	12	0.99
4526749--4526800	24	2.2	24	82	6	61	78	7	1	11	1.02
4533321--4533356	13	2.7	13	91	4	54	47	0	5	47	1.25
4534321--4534354	15	2.2	16	89	5	52	64	0	0	35	0.94
4534912--4534951	13	2.9	14	81	11	55	47	0	5	47	1.24
4538098--4538122	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4541027--4541112	40	2.1	42	80	8	97	54	8	10	26	1.62
4544037--4544073	19	1.9	19	94	0	65	64	2	2	29	1.21
4544388--4544443	3	18.0	3	78	14	60	60	0	0	39	0.97
4544389--4544441	7	7.9	7	80	19	60	60	0	0	39	0.97
4544616--4544768	14	10.4	14	69	16	62	49	30	0	20	1.49
4544643--4544784	30	4.9	28	75	16	92	47	31	0	19	1.55
4544937--4544983	22	2.1	22	88	0	67	51	17	2	29	1.57
4544974--4545013	15	2.6	16	88	8	64	47	35	5	12	1.63
4561784--4561817	17	2.0	17	94	0	59	32	23	0	44	1.54
4566796--4566827	16	2.0	16	93	0	55	37	15	6	40	1.73
4567805--4567838	17	2.0	17	94	0	59	32	29	0	38	1.58
4573040--4573089	16	3.1	16	85	2	64	32	2	4	62	1.25
4574609--4574652	17	2.6	16	83	13	61	43	20	9	27	1.82
4574731--4574886	67	2.3	68	83	3	199	39	14	19	26	1.90
4574832--4574941	51	2.2	50	88	1	157	40	12	21	24	1.88
4574887--4575159	137	2.0	137	82	4	336	41	11	17	30	1.85
4576110--4576186	34	2.3	33	84	8	93	2	19	1	76	0.97
4576461--4576575	54	2.1	54	84	7	153	16	13	10	60	1.59
4578919--4578959	16	2.6	16	100	0	82	39	12	24	24	1.89
4578919--4578961	8	5.4	8	81	18	54	37	11	25	25	1.90
4581271--4581319	23	2.2	22	89	7	73	30	10	6	53	1.59
4581450--4581483	11	3.0	11	91	8	59	88	0	11	0	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4581485--4581540	3	19.0	3	88	3	87	64	0	3	32	1.11
4582401--4582446	5	9.6	5	86	6	60	82	4	0	13	0.81
4582405--4582445	19	2.2	19	95	4	75	82	4	0	12	0.81
4589089--4589119	14	2.2	14	94	0	53	25	0	3	70	1.02
4590355--4590393	12	3.3	12	82	7	53	79	0	0	20	0.73
4590337--4590388	20	2.6	20	82	11	54	78	0	5	15	0.92
4590515--4590745	47	4.8	47	82	3	273	41	18	10	29	1.84
4590515--4590746	95	2.4	97	84	2	281	41	18	10	28	1.85
4590714--4590776	31	2.0	31	100	0	126	38	22	12	26	1.90
4590661--4590825	80	2.1	79	90	2	258	40	19	11	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133