genome.fa.s645.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  54  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11202831--11202884	26	2.0	27	85	3	74	33	12	24	29	1.92
11202824--11202978	60	2.6	61	84	3	172	37	15	18	28	1.92
11202963--11203165	61	3.3	58	77	8	183	36	12	18	32	1.88
11202824--11203228	215	1.9	213	85	4	564	37	13	18	31	1.89
11203004--11203194	61	3.1	59	78	5	177	38	14	18	29	1.90
11203458--11203504	22	2.1	22	92	0	76	21	25	27	25	1.99
11205702--11205748	21	2.2	21	85	7	60	2	14	4	78	0.99
11207386--11207430	20	2.2	20	84	7	56	53	4	17	24	1.62
11210934--11210976	22	2.0	22	86	9	61	23	0	30	46	1.52
11211071--11211125	8	6.4	9	73	10	53	21	0	30	47	1.51
11210981--11211221	107	2.3	106	86	3	335	27	2	28	41	1.70
11211076--11211134	17	3.4	17	83	2	73	25	1	30	42	1.65
11211178--11211251	24	3.2	23	83	9	71	24	1	22	51	1.56
11211178--11211251	23	3.2	23	79	9	69	24	1	22	51	1.56
11211404--11211484	23	3.5	22	78	9	72	24	3	22	49	1.66
11212018--11212068	26	1.9	27	84	4	68	25	3	1	68	1.17
11214270--11214312	19	2.3	19	84	8	52	46	2	6	44	1.43
11215155--11215185	15	2.1	15	93	0	53	41	3	19	35	1.67
11215693--11215745	28	1.9	27	84	3	70	1	24	1	71	1.06
11215698--11215749	17	2.9	18	81	18	56	3	25	0	71	1.03
11215917--11215968	21	2.5	22	76	14	58	3	21	0	75	0.97
11215918--11215965	16	2.9	16	75	3	51	4	22	0	72	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11215894--11215985	29	3.1	30	74	12	82	3	20	2	73	1.07
11216150--11216199	16	3.2	14	81	18	55	78	2	10	10	1.06
11218269--11218398	64	2.1	62	79	2	134	37	11	15	35	1.84
11218468--11218611	62	2.3	63	85	8	197	34	13	14	36	1.86
11218508--11218738	62	3.7	61	75	8	173	40	12	11	34	1.80
11218727--11218767	16	2.6	16	96	0	73	41	19	2	36	1.65
11219042--11219170	62	2.1	61	81	11	147	33	10	8	48	1.67
11224630--11224656	2	13.5	2	100	0	54	48	0	0	51	1.00
11230770--11230852	36	2.4	37	84	8	102	28	7	4	59	1.45
11233299--11233327	2	14.5	2	100	0	58	51	0	0	48	1.00
11235671--11235746	29	2.7	27	84	8	91	46	1	0	52	1.08
11236485--11236527	17	2.5	17	84	3	59	69	2	0	27	1.00
11236566--11236617	9	5.7	9	75	11	52	65	3	1	28	1.21
11236575--11236623	19	2.5	19	73	3	53	65	4	2	28	1.22
11236657--11236702	21	2.2	20	85	11	58	43	6	2	47	1.41
11236670--11236863	9	20.0	9	76	15	95	57	4	2	36	1.32
11236675--11236863	10	19.3	10	75	11	128	58	3	2	34	1.30
11237088--11237126	18	2.2	18	85	0	51	30	2	0	66	1.05
11237174--11237232	26	2.3	26	82	2	84	33	5	1	59	1.29
11237362--11237504	9	15.7	9	66	20	57	36	2	2	59	1.21
11237328--11237416	34	2.6	34	78	3	79	39	3	4	52	1.38
11237414--11237455	21	2.0	20	86	4	57	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11237414--11237474	21	3.1	19	81	11	52	42	3	1	52	1.27
11237391--11237599	9	22.6	9	69	14	68	36	1	4	57	1.29
11237577--11237620	21	2.1	21	83	8	54	29	0	6	63	1.20
11237531--11237684	69	2.2	68	80	10	170	36	0	6	56	1.30
11238390--11238425	15	2.2	17	90	9	58	61	0	0	38	0.96
11238390--11238425	8	4.5	8	89	10	56	61	0	0	38	0.96
11238434--11238489	28	2.1	25	83	9	67	58	1	0	39	1.08
11241208--11241257	23	2.2	23	96	0	91	44	8	14	34	1.74
11242558--11242603	21	2.2	21	81	14	51	30	8	2	58	1.40
11244219--11244280	32	1.9	32	93	0	106	45	11	9	33	1.73
11244524--11244867	145	2.4	144	83	0	445	44	8	11	35	1.71
11245442--11245722	37	7.6	37	79	8	252	34	15	18	31	1.92
11245441--11245721	74	3.8	75	78	9	283	34	15	18	32	1.92
11245441--11245721	111	2.5	111	81	7	329	34	15	18	32	1.92
11245961--11246328	127	2.9	126	79	6	377	36	11	16	36	1.85
11247249--11247328	41	1.9	42	87	2	117	30	8	20	41	1.82
11246935--11247737	256	3.2	251	83	4	888	31	12	19	36	1.89
11249336--11249607	123	2.2	122	83	7	334	19	15	8	56	1.65
11249582--11249617	9	3.9	9	88	3	54	0	11	2	86	0.68
11259124--11259480	145	2.5	145	79	6	375	40	11	14	33	1.82
11262681--11262809	64	2.0	64	90	0	204	28	10	20	40	1.86
11270073--11270107	17	2.0	17	88	5	52	34	5	14	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11277084--11277121	18	2.2	18	85	4	51	36	5	10	47	1.61
11290388--11290727	49	6.8	48	77	8	279	30	12	18	37	1.88
11291169--11291232	25	2.5	25	76	2	74	71	4	6	17	1.24
11291223--11291250	11	2.5	11	100	0	56	75	0	17	7	1.03
11298823--11298963	35	4.1	36	77	14	131	53	1	0	44	1.14
11298823--11298963	18	8.2	18	77	17	131	53	1	0	44	1.14
11298848--11298918	15	4.5	15	70	13	54	52	0	1	46	1.09
11298823--11298961	53	2.7	50	80	12	149	53	1	0	43	1.14
11300733--11300765	7	4.6	7	92	7	57	72	0	0	27	0.85
11300666--11300778	28	4.2	26	72	12	86	69	1	4	24	1.17
11300667--11300769	11	9.8	11	66	26	55	70	0	3	24	1.09
11300758--11300983	118	1.9	118	86	5	325	47	6	9	36	1.62
11301602--11301633	15	2.1	15	100	0	64	65	6	0	28	1.16
11301606--11301644	15	2.6	15	88	8	53	71	2	0	25	0.98
11302560--11302598	16	2.4	17	86	4	53	17	2	5	74	1.12
11303536--11303568	15	2.2	15	89	10	50	51	0	0	48	1.00
11303538--11303569	17	1.9	16	93	6	55	53	0	0	46	1.00
11304498--11304535	4	9.5	4	88	0	58	21	2	2	73	1.07
11309459--11309491	15	2.1	16	88	5	50	63	0	6	30	1.18
11309857--11309887	11	2.8	11	95	0	53	19	19	6	54	1.65
11310195--11310307	42	2.7	41	80	5	136	29	15	16	38	1.89
11310422--11310584	57	2.9	57	79	5	179	23	14	15	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11310397--11310643	114	2.2	113	76	13	247	24	14	16	44	1.85
11310621--11310666	24	1.9	24	82	8	58	26	4	17	52	1.63
11311586--11311628	22	2.0	22	86	9	61	74	18	2	4	1.10
11312606--11312648	18	2.4	18	80	0	50	72	4	2	20	1.14
11312627--11312764	36	3.6	36	67	19	100	68	2	5	23	1.23
11312544--11312767	37	5.6	39	68	16	156	69	3	4	22	1.22
11312699--11312810	18	6.7	17	72	19	69	69	2	4	23	1.19
11312642--11312776	39	3.2	45	69	21	144	70	2	5	21	1.21
11312549--11312810	82	3.2	81	98	1	506	69	3	4	22	1.23
11312799--11313018	118	1.9	118	84	4	300	48	5	8	38	1.56
11313950--11314100	18	8.9	18	76	19	116	54	0	1	43	1.16
11313954--11314078	22	5.8	22	76	12	116	54	0	2	42	1.19
11313950--11314099	33	4.4	35	70	18	95	54	0	2	42	1.16
11313950--11314079	44	3.0	42	81	14	151	53	0	2	43	1.18
11314145--11314224	16	4.9	15	73	20	63	51	1	0	47	1.08
11314195--11314259	26	2.5	26	78	9	80	47	3	1	47	1.27
11314375--11314428	14	3.9	14	77	15	58	46	3	1	48	1.30
11314380--11314427	15	3.3	15	82	2	62	43	2	2	52	1.24
11315524--11315557	6	5.7	6	96	0	59	38	0	0	61	0.96
11316080--11316112	18	1.9	17	88	11	50	69	0	3	27	1.03
11316509--11316562	26	2.0	27	89	3	83	37	3	5	53	1.42
11317049--11317104	26	2.1	27	87	9	80	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11317256--11317286	12	2.6	12	94	0	53	3	38	0	58	1.15
11318056--11318085	13	2.3	13	94	0	51	70	0	6	23	1.11
11319655--11319743	13	6.8	13	71	20	62	21	0	33	44	1.52
11321483--11321521	19	2.0	20	85	5	53	20	2	17	58	1.50
11324759--11324817	29	2.0	29	83	6	75	44	8	3	44	1.51
11326947--11327030	39	2.1	40	82	10	102	20	4	3	71	1.19
11330859--11330900	10	4.4	10	85	8	52	80	4	11	2	0.95
11331163--11331201	11	3.5	11	82	6	51	74	2	15	7	1.15
11332793--11332828	3	12.0	3	100	0	72	66	0	0	33	0.92
11333724--11333758	3	11.7	3	100	0	70	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133