genome.fa.s645.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  95  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18505262--18505328	8	8.4	8	86	0	53	8	2	41	46	1.50
18505282--18505331	2	25.0	2	91	0	73	2	4	48	46	1.32
18506950--18507004	22	2.5	22	79	5	67	21	12	18	47	1.82
18507009--18507071	20	3.1	20	90	2	99	39	14	7	38	1.75
18507117--18507162	19	2.4	19	88	0	65	52	8	2	36	1.45
18507257--18507299	20	2.2	20	91	0	68	51	25	0	23	1.49
18508069--18508320	102	2.5	102	84	0	333	44	19	7	28	1.77
18514482--18514533	18	2.9	18	78	21	56	69	15	0	15	1.20
18514489--18514533	18	2.5	19	82	17	60	68	15	0	15	1.21
18514482--18514534	16	2.9	18	78	18	56	69	15	0	15	1.19
18514509--18514566	30	1.9	30	89	0	89	74	13	0	12	1.08
18514619--18514666	25	2.0	24	83	4	60	64	18	2	14	1.38
18517462--18517597	53	2.6	53	87	0	191	38	8	5	47	1.55
18517462--18517622	53	3.0	53	82	7	177	36	9	4	49	1.57
18517653--18517698	25	2.0	25	83	12	62	67	2	8	21	1.29
18518731--18518788	6	9.8	6	80	14	50	27	1	3	67	1.17
18519149--18519469	32	9.8	33	76	6	242	36	22	12	27	1.91
18519182--18519470	65	4.4	65	75	6	226	35	22	13	28	1.92
18519151--18519465	97	3.2	98	80	7	320	36	23	12	27	1.91
18519618--18519723	33	3.2	33	73	9	90	37	15	13	33	1.86
18519617--18519755	67	2.1	66	80	6	147	35	14	15	34	1.87
18519767--18520044	33	8.5	33	74	7	197	34	12	20	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18519735--18519945	99	2.1	98	83	0	260	35	12	19	33	1.89
18519837--18520012	65	2.7	65	81	0	208	34	13	18	34	1.90
18520091--18520186	33	2.9	32	84	3	111	38	10	18	32	1.85
18523637--18523672	14	2.6	14	90	0	54	72	11	5	11	1.28
18529898--18529957	27	2.2	27	88	8	86	28	8	21	41	1.82
18532408--18532474	27	2.5	27	85	0	98	40	1	10	47	1.47
18534546--18534582	3	12.3	3	100	0	74	32	0	0	67	0.91
18537707--18537950	129	1.9	129	83	1	319	32	18	14	34	1.91
18543306--18543366	21	2.9	21	79	13	72	19	11	24	44	1.84
18550874--18550929	10	5.7	10	93	2	87	28	0	19	51	1.47
18558764--18558806	16	2.7	16	81	0	50	23	0	6	69	1.12
18558780--18558839	30	2.0	31	84	12	81	25	0	3	71	1.01
18570612--18570640	12	2.5	12	94	5	51	27	0	34	37	1.57
18570706--18570847	62	2.3	62	79	2	160	31	11	24	32	1.91
18571196--18571245	22	2.3	22	82	0	64	36	12	12	40	1.79
18571477--18571556	31	2.5	31	84	9	92	41	10	10	38	1.72
18571668--18572028	44	8.2	44	81	5	383	23	14	17	44	1.86
18571661--18572028	132	2.8	132	83	6	426	23	14	17	43	1.87
18571668--18572071	44	9.2	44	78	9	254	23	13	18	44	1.85
18571668--18572071	132	3.1	129	79	9	374	23	13	18	44	1.85
18572555--18572583	12	2.4	12	100	0	58	27	17	6	48	1.72
18573258--18573307	21	2.3	22	83	10	59	80	2	2	16	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18577261--18577336	39	1.9	39	89	5	118	34	10	22	32	1.88
18587493--18587540	25	1.9	25	83	8	62	43	12	10	33	1.77
18591728--18591776	17	2.8	17	77	14	55	77	0	16	6	0.96
18591728--18591786	18	3.2	18	76	11	66	76	0	16	6	1.00
18591730--18591792	16	3.6	17	71	21	58	76	0	17	6	0.99
18592934--18593069	47	2.9	46	90	4	220	37	10	13	38	1.80
18592937--18593068	68	1.9	67	86	6	185	37	9	14	37	1.79
18593198--18593291	45	2.1	45	93	0	161	29	18	18	34	1.94
18593427--18593468	16	2.7	16	74	3	50	35	16	11	35	1.86
18593653--18593888	41	5.7	40	77	10	181	24	14	16	45	1.84
18593653--18593837	41	4.5	40	81	8	201	23	12	15	47	1.80
18593653--18593878	83	2.7	81	80	8	231	24	13	15	46	1.83
18593817--18593919	41	2.5	42	82	4	127	25	16	14	43	1.86
18597946--18598195	129	1.9	129	85	1	340	33	17	12	36	1.87
18611101--18611148	19	2.6	18	81	12	62	27	0	18	54	1.44
18618034--18618060	13	2.1	13	100	0	54	51	0	0	48	1.00
18618125--18618163	11	3.6	12	80	19	50	79	0	5	15	0.90
18619019--18619069	27	2.0	25	88	7	75	27	0	1	70	0.98
18619019--18619080	31	2.0	32	84	9	83	25	0	3	70	1.02
18619229--18619292	29	2.2	30	81	13	71	34	6	20	39	1.78
18619402--18619428	2	13.5	2	100	0	54	51	0	0	48	1.00
18621817--18621868	3	17.3	3	88	7	79	65	1	32	0	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18630345--18630386	12	3.7	12	81	12	52	76	2	11	9	1.12
18630397--18630442	8	5.5	8	89	5	65	82	0	4	13	0.81
18630974--18631002	12	2.5	12	94	5	51	27	0	34	37	1.57
18631065--18631209	62	2.3	62	76	6	159	32	11	22	33	1.90
18631852--18631882	16	1.9	16	93	0	53	35	19	6	38	1.77
18631859--18631930	31	2.3	31	85	7	92	43	11	6	38	1.67
18631878--18631938	31	2.0	31	87	6	88	44	9	9	36	1.71
18632062--18632460	44	9.4	44	77	12	341	24	15	16	43	1.87
18633681--18633728	20	2.3	20	86	10	62	79	2	2	16	0.93
18633704--18633735	13	2.3	15	89	10	50	68	0	3	28	1.04
18639821--18639873	18	3.3	18	65	29	55	41	9	16	32	1.81
18639815--18639882	30	2.3	30	94	0	118	41	11	17	29	1.85
18647739--18647804	25	2.6	26	72	15	66	42	12	12	33	1.79
18647886--18647980	50	1.9	49	82	6	120	50	9	12	27	1.71
18651573--18651623	13	3.6	14	80	14	52	82	5	9	1	0.91
18651991--18652069	18	4.5	18	84	9	101	81	0	13	5	0.86
18651981--18652065	42	2.0	42	86	8	120	78	0	15	5	0.93
18651987--18652068	34	2.4	34	80	13	105	81	0	13	4	0.84
18651984--18652069	17	4.9	19	76	18	64	81	0	13	4	0.84
18653212--18653347	47	2.9	46	87	10	206	36	9	14	38	1.79
18653215--18653343	68	1.9	68	84	10	174	36	9	14	39	1.79
18653212--18653403	92	2.1	91	80	9	212	36	10	15	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18653478--18653559	39	2.1	39	90	2	130	29	15	18	36	1.92
18653700--18653741	16	2.7	16	74	3	50	35	16	14	33	1.89
18653970--18654110	43	3.4	41	77	13	130	24	10	14	49	1.75
18653927--18654277	41	8.4	41	76	6	240	25	15	16	43	1.86
18654166--18654296	44	3.1	40	77	16	122	26	16	16	41	1.88
18655960--18655985	4	6.5	4	100	0	52	46	0	0	53	1.00
18656079--18656125	24	1.9	25	86	4	69	48	4	8	38	1.53
18656213--18656244	8	4.0	8	91	0	55	84	3	0	12	0.74
18656662--18656788	63	2.0	63	84	6	168	55	9	12	22	1.65
18656602--18656811	114	1.8	114	84	7	291	52	9	13	24	1.70
18658769--18658829	29	2.2	28	82	5	79	50	0	3	45	1.17
18658925--18658986	29	2.2	27	88	5	88	46	3	0	50	1.17
18660859--18660986	63	2.1	61	80	2	139	42	6	2	48	1.41
18661591--18661656	26	2.6	24	73	21	62	50	4	1	43	1.32
18661817--18661855	16	2.5	16	88	12	55	51	2	0	46	1.14
18662709--18662738	12	2.6	11	94	5	51	0	13	0	86	0.57
18662801--18662843	21	2.2	20	91	8	70	4	4	9	81	0.97
18667445--18667487	22	2.0	22	85	0	59	25	18	23	32	1.97
18668523--18668612	45	2.0	45	95	0	162	26	26	2	44	1.66
18669162--18669214	27	2.0	27	85	7	72	32	18	24	24	1.97
18672963--18673009	17	2.9	17	87	6	62	34	0	2	63	1.06
18679341--18679371	8	4.0	8	95	4	55	77	0	22	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18679341--18679382	13	2.9	14	86	10	50	73	2	23	0	0.94
18681079--18681135	30	1.9	30	89	7	89	38	15	3	42	1.65
18681572--18681598	14	1.9	14	100	0	54	44	0	14	40	1.46
18681640--18681682	22	1.9	22	85	4	59	48	6	11	32	1.66
18682061--18682140	29	3.1	24	77	17	72	41	1	3	53	1.27
18682120--18682201	40	2.0	40	88	4	121	48	0	0	51	1.00
18682120--18682183	22	3.2	20	74	17	69	46	0	0	53	1.00
18682120--18682182	19	3.0	22	68	15	62	46	0	0	53	1.00
18682536--18682569	15	2.2	16	89	5	52	44	0	0	55	0.99
18682905--18682934	2	15.0	2	92	0	51	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133