genome.fa.s645.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  37  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8260427--8260528	5	19.4	5	73	24	70	19	0	1	77	0.92
8260429--8260540	21	5.4	21	70	20	69	21	0	1	75	0.94
8260431--8260528	16	6.5	15	74	16	78	20	1	2	76	0.95
8260429--8260516	44	2.0	44	84	13	117	20	1	2	76	0.97
8266818--8266876	8	7.2	8	73	17	50	23	13	0	62	1.31
8267964--8268026	31	2.1	31	93	3	110	53	3	4	38	1.38
8270206--8270242	19	1.9	19	88	0	56	43	5	10	40	1.63
8274441--8275271	417	2.0	417	81	7	981	54	8	9	28	1.62
8281534--8281672	67	2.1	67	87	0	197	51	5	10	33	1.57
8281966--8282043	19	4.1	18	73	14	59	60	2	3	33	1.28
8282153--8282227	21	3.7	20	70	10	53	54	1	5	38	1.31
8282389--8283005	218	2.9	215	77	9	515	52	6	9	31	1.59
8283088--8283141	21	2.7	19	81	13	56	57	3	3	35	1.34
8283344--8283388	15	3.0	15	83	9	56	57	0	2	40	1.11
8284348--8284378	1	31.0	1	93	0	53	96	0	3	0	0.21
8284350--8284382	10	3.3	10	95	0	57	93	0	6	0	0.33
8284348--8284383	12	2.8	13	91	8	56	91	0	8	0	0.41
8288807--8288868	27	2.3	27	80	5	72	40	4	1	53	1.32
8288826--8288865	21	1.9	21	85	10	55	37	5	0	57	1.21
8289609--8289668	28	2.1	28	79	8	68	43	0	6	50	1.28
8297733--8297779	17	3.1	15	82	14	60	51	2	4	42	1.33
8297739--8297779	17	2.6	17	88	11	61	53	2	4	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8301127--8301177	22	2.3	22	77	12	52	47	3	7	41	1.51
8301316--8301764	22	20.9	22	69	11	135	48	6	8	36	1.60
8301444--8301600	65	2.4	66	80	4	158	52	7	4	35	1.50
8301729--8301834	22	5.0	22	77	7	85	45	2	12	39	1.56
8301886--8301977	22	4.2	21	70	9	67	45	5	6	42	1.53
8301929--8302068	22	6.4	22	77	3	93	45	5	7	42	1.53
8302709--8302767	31	1.9	31	92	0	100	27	10	13	49	1.74
8303182--8303244	22	2.9	22	73	17	60	55	7	6	30	1.54
8303218--8303342	44	2.8	43	75	6	124	47	4	9	38	1.58
8303228--8303335	22	4.9	22	77	4	101	48	4	8	38	1.54
8303420--8303497	22	3.6	21	77	8	84	46	5	10	38	1.60
8308312--8308350	20	1.9	21	89	5	62	43	0	38	17	1.50
8318745--8318798	17	3.1	17	81	2	63	53	0	3	42	1.18
8320355--8320394	12	3.3	12	80	13	55	65	0	0	35	0.93
8322842--8323103	22	11.9	22	68	9	86	51	4	7	35	1.51
8322822--8322991	44	3.9	44	72	8	127	52	4	6	36	1.48
8323133--8323294	22	7.5	22	71	9	100	50	6	9	33	1.61
8323584--8323701	11	10.7	11	67	3	67	50	4	4	41	1.41
8323584--8323788	22	9.3	22	76	3	135	47	4	5	41	1.49
8323584--8323788	66	3.1	65	79	5	198	47	4	5	41	1.49
8324024--8324083	22	2.8	21	73	16	50	55	3	6	35	1.43
8324321--8324390	22	3.2	22	72	11	63	48	1	10	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8324308--8324412	44	2.4	44	80	3	122	48	4	9	37	1.57
8324332--8324455	22	5.6	22	78	6	108	46	4	9	38	1.58
8324303--8324447	44	3.3	44	76	4	114	46	4	10	37	1.59
8324470--8324596	22	5.8	22	70	9	62	48	7	5	38	1.56
8324560--8324629	33	2.1	33	89	5	106	42	8	11	37	1.72
8324594--8324674	22	3.7	22	81	3	92	37	8	14	39	1.77
8325040--8325138	21	4.7	21	73	5	83	48	9	3	39	1.50
8325235--8325282	16	2.9	17	78	9	55	50	0	0	50	1.00
8328960--8328998	20	1.9	21	89	5	62	43	0	38	17	1.50
8329096--8329123	6	4.7	6	100	0	56	17	28	0	53	1.44
8334515--8334549	17	2.1	17	88	0	52	34	0	0	65	0.93
8334516--8334557	22	1.9	22	90	0	66	35	0	0	64	0.94
8334487--8334561	29	2.6	29	81	12	91	38	0	0	61	0.96
8334921--8334958	19	2.1	19	85	5	51	31	2	10	55	1.48
8336111--8336277	84	2.0	81	87	7	239	35	11	11	40	1.78
8337228--8337283	29	2.0	29	92	3	96	33	21	14	30	1.93
8344188--8344237	25	2.0	25	96	0	91	34	12	18	36	1.87
8346431--8346460	15	2.0	15	100	0	60	20	0	20	60	1.37
8349593--8349672	41	2.0	41	92	0	133	38	1	3	56	1.25
8349592--8349681	11	8.5	11	72	9	71	40	1	3	55	1.24
8349634--8349690	11	5.3	11	80	4	53	42	0	1	56	1.10
8349621--8349689	21	3.3	21	76	7	70	39	0	2	57	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8354097--8354177	33	2.4	33	87	2	108	40	0	12	46	1.41
8354157--8354199	21	2.0	21	86	0	59	41	2	11	44	1.53
8356513--8356544	2	16.0	2	100	0	64	0	50	0	50	1.00
8362716--8362769	27	2.0	27	88	0	81	29	3	11	55	1.52
8362743--8362858	21	5.5	21	73	1	97	33	6	11	48	1.66
8363235--8363356	22	5.6	21	76	5	91	42	8	4	44	1.55
8363436--8363530	22	4.4	23	74	16	96	36	11	4	47	1.59
8363819--8363871	21	2.5	21	84	3	61	41	11	3	43	1.58
8363837--8363898	21	2.9	21	85	4	88	38	4	1	54	1.31
8363837--8363892	11	5.2	11	84	4	69	39	3	1	55	1.28
8364196--8364266	21	3.3	21	69	18	56	35	8	5	50	1.56
8364492--8364613	45	2.7	43	71	25	101	32	7	2	57	1.40
8364618--8364696	39	2.1	38	82	2	95	41	5	3	49	1.43
8364749--8364805	22	2.6	22	80	5	62	36	10	3	49	1.55
8364718--8364820	22	4.7	22	69	10	50	33	9	3	52	1.53
8365058--8365138	22	3.7	22	80	8	78	41	8	3	45	1.52
8365068--8365169	21	4.8	21	76	9	84	39	7	6	46	1.60
8365818--8365846	14	2.0	15	93	6	51	24	20	0	55	1.44
8367482--8367530	17	3.1	16	80	11	57	44	2	0	53	1.12
8367482--8367544	33	2.0	31	84	6	81	49	3	0	47	1.17
8368982--8369023	2	21.5	2	80	4	50	45	2	4	47	1.36
8377368--8377401	14	2.3	15	90	5	52	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8378702--8378741	2	21.5	2	85	14	50	45	0	2	52	1.14
8380067--8380102	18	1.9	19	88	5	56	25	8	0	66	1.19
8380815--8380850	16	2.3	15	90	4	54	66	5	5	22	1.34
8381222--8381259	13	2.8	14	88	4	60	7	10	0	81	0.87
8384097--8384128	2	16.0	2	93	0	55	50	0	3	46	1.17
8386539--8386592	21	2.6	20	88	8	81	22	3	14	59	1.51
8387309--8387341	13	2.4	14	90	5	50	42	3	0	54	1.15
8390553--8390626	27	3.0	24	72	20	71	59	0	0	40	0.97
8393648--8393693	23	2.0	23	87	8	67	13	17	10	58	1.62
8394328--8394382	22	2.5	22	82	5	67	38	7	18	36	1.78
8400046--8400130	42	2.0	42	97	0	161	23	8	12	55	1.64
8401846--8402196	138	2.6	136	78	8	365	32	14	11	42	1.81
8407911--8407985	24	3.1	24	75	14	66	34	4	2	58	1.31
8407901--8407986	22	3.7	23	72	17	72	37	3	2	56	1.29
8408502--8408551	19	2.6	19	78	9	57	64	4	4	28	1.30
8409298--8409361	29	2.3	28	84	7	78	51	3	6	39	1.43
8412131--8412200	34	2.1	34	88	0	104	28	8	24	38	1.85
8413900--8413952	16	3.2	16	77	12	63	41	0	7	50	1.30
8413900--8414013	34	3.4	33	84	9	140	43	1	7	46	1.43
8414651--8414709	25	2.6	23	79	12	68	47	1	3	47	1.29
8414975--8415047	30	2.5	30	75	2	76	46	4	8	41	1.53
8415399--8415432	13	2.6	13	85	0	50	20	8	0	70	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8425198--8425576	161	2.3	162	81	4	399	40	13	12	32	1.82
8425193--8425497	81	3.8	80	75	10	253	40	14	12	32	1.84
8425373--8425576	81	2.5	82	80	2	214	41	12	11	34	1.79
8425565--8425635	36	2.0	36	86	10	101	43	16	11	28	1.83
8428213--8428242	14	2.2	13	94	5	51	3	6	6	83	0.90
8432783--8432815	15	2.2	15	89	10	50	21	0	0	78	0.75
8432924--8432982	19	3.1	18	83	14	57	72	3	3	20	1.13
8433044--8433088	21	2.1	21	84	8	56	24	13	20	42	1.87
8434495--8434533	21	2.0	20	85	14	55	53	2	7	35	1.43
8435717--8435767	21	2.4	22	78	18	54	52	0	1	45	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133