genome.fa.s645.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  51  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10710702--10710759	30	1.9	30	85	0	80	60	0	3	36	1.14
10710819--10710877	17	3.4	18	71	15	52	61	5	0	33	1.18
10710822--10710863	17	2.5	17	88	7	59	61	4	0	33	1.17
10710924--10710958	17	2.0	18	88	5	54	60	0	8	31	1.27
10711098--10711137	19	2.1	19	86	9	55	47	0	5	47	1.24
10712781--10712836	21	2.6	21	77	8	60	21	1	32	44	1.63
10718425--10718490	25	2.6	24	77	13	69	45	1	4	48	1.32
10718898--10718949	26	2.0	26	84	0	68	44	3	1	50	1.31
10718947--10719248	165	1.9	163	80	9	368	48	6	3	41	1.47
10726734--10726777	13	3.1	14	83	6	54	68	6	2	22	1.25
10726734--10726780	14	3.5	13	82	8	58	68	6	2	23	1.24
10726734--10726811	24	3.1	24	82	12	70	70	3	3	21	1.20
10726773--10726808	18	1.9	19	88	5	56	72	0	5	22	1.05
10726792--10726834	22	2.0	21	86	4	59	76	0	16	6	0.99
10727621--10727650	3	10.0	3	100	0	60	66	0	0	33	0.92
10729481--10729515	15	2.5	14	90	9	54	74	0	2	22	0.95
10730402--10730440	20	2.0	20	85	10	53	79	2	10	7	1.02
10730533--10730562	13	2.2	14	94	5	53	83	0	0	16	0.65
10734517--10734555	20	2.0	20	89	0	60	43	0	0	56	0.99
10735295--10735326	14	2.4	14	90	10	50	46	0	0	53	1.00
10736544--10736594	18	2.8	18	82	8	59	49	9	0	41	1.36
10738095--10738359	127	2.1	126	81	9	308	41	12	5	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10738544--10738684	61	2.3	61	80	7	153	39	19	6	34	1.77
10739536--10739581	17	2.6	18	86	6	58	13	2	39	45	1.55
10739586--10739703	7	18.0	7	71	15	83	14	0	37	47	1.50
10739610--10739692	19	4.3	19	79	10	87	12	0	37	50	1.40
10739632--10739703	32	2.3	32	83	9	94	11	0	36	52	1.37
10739668--10739703	13	2.9	12	88	8	54	11	0	36	52	1.37
10739610--10739684	39	2.0	39	89	5	118	12	0	37	50	1.39
10740915--10741066	50	3.0	48	76	10	144	44	13	15	26	1.84
10741076--10741182	51	2.1	51	82	6	128	48	13	14	24	1.78
10741809--10741846	14	2.8	14	80	4	51	18	15	2	63	1.43
10743400--10743698	147	2.0	147	97	0	562	26	20	16	36	1.93
10764286--10764799	60	8.7	58	88	4	694	34	12	6	46	1.67
10764284--10764800	119	4.4	117	84	8	665	34	12	6	46	1.68
10764825--10764969	5	27.4	5	68	22	68	74	4	1	19	1.07
10764833--10764905	6	12.7	6	78	11	73	82	2	1	13	0.85
10764828--10764904	11	6.8	11	80	14	77	81	3	1	12	0.88
10764931--10764970	21	2.0	20	95	5	71	75	2	0	22	0.93
10765768--10765879	43	2.6	44	76	13	115	66	3	5	24	1.28
10765849--10765991	4	35.8	4	72	16	52	65	3	1	30	1.18
10765859--10765925	25	2.6	27	80	15	72	64	2	0	32	1.09
10765864--10765991	22	5.8	22	66	25	65	64	3	0	31	1.17
10765993--10766039	15	3.1	15	87	9	69	80	4	2	12	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10765987--10766040	22	2.5	22	85	11	67	77	3	1	16	1.00
10765977--10766039	30	2.0	33	84	9	87	77	3	1	17	0.97
10766224--10766397	84	2.1	84	89	4	262	35	23	17	24	1.95
10766224--10766397	43	4.1	41	89	4	249	35	23	17	24	1.95
10767405--10767454	22	2.4	21	90	6	75	10	8	0	82	0.86
10775770--10776398	58	10.7	58	85	5	818	35	13	6	44	1.71
10775770--10776397	118	5.3	115	87	7	825	35	13	6	44	1.71
10775770--10776398	176	3.6	173	86	7	856	35	13	6	44	1.71
10777041--10777083	3	14.3	3	80	9	52	65	0	2	32	1.06
10777041--10777196	12	12.4	12	70	20	63	64	3	1	30	1.20
10777079--10777196	4	29.5	4	71	11	57	65	4	1	28	1.21
10777045--10777205	20	9.2	17	68	22	77	64	3	1	29	1.21
10777180--10777250	16	4.5	15	76	13	63	77	4	1	16	1.00
10777203--10777251	22	2.2	22	85	7	64	79	4	2	14	0.97
10777205--10777251	16	3.0	16	87	6	69	78	4	2	14	0.99
10777403--10777449	20	2.3	21	85	7	62	8	0	44	46	1.33
10777453--10777522	19	3.6	19	81	9	70	22	2	37	37	1.69
10777472--10777528	21	2.8	20	84	12	73	22	1	36	38	1.65
10780279--10780334	21	2.7	20	82	17	78	39	30	5	25	1.78
10780425--10780461	17	2.2	16	90	4	56	29	16	0	54	1.43
10788905--10788933	15	1.9	15	100	0	58	6	13	27	51	1.66
10789101--10789149	23	2.1	23	84	0	62	46	2	6	44	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10789116--10789153	8	5.0	8	84	9	53	52	0	0	47	1.00
10789114--10789153	15	2.7	14	81	11	53	55	0	0	45	0.99
10792265--10792395	67	2.0	65	86	5	183	20	14	19	45	1.85
10792918--10792943	10	2.6	10	100	0	52	61	7	7	23	1.49
10794667--10794929	130	2.0	132	87	2	386	31	12	13	42	1.82
10795795--10795986	62	3.1	61	73	9	176	36	15	15	32	1.89
10795818--10795997	61	2.9	61	70	19	158	38	15	15	31	1.88
10795818--10796087	123	2.2	124	80	5	305	37	15	14	32	1.89
10800812--10800848	17	2.2	17	100	0	74	29	10	0	59	1.31
10801712--10801766	17	3.2	17	79	7	58	43	9	1	45	1.46
10802308--10802376	24	2.8	25	82	4	68	42	1	8	47	1.43
10802276--10802408	59	2.2	60	82	4	162	41	2	10	45	1.51
10802494--10802613	57	2.1	56	82	7	145	38	4	13	44	1.63
10804650--10804708	26	2.3	26	91	2	93	50	0	1	47	1.11
10804785--10804854	36	2.0	35	91	2	113	37	5	0	57	1.23
10804796--10804848	13	4.3	13	73	22	51	39	5	0	54	1.24
10804843--10804950	18	6.1	18	74	15	91	43	0	3	52	1.19
10804795--10804963	85	2.0	85	85	9	229	41	1	2	54	1.24
10804863--10804983	23	5.5	23	72	13	96	42	0	2	54	1.13
10804843--10804983	67	2.1	68	77	12	152	43	0	2	53	1.15
10804871--10804975	54	1.9	54	83	11	135	43	0	2	53	1.15
10804830--10804986	72	2.2	72	85	4	201	42	0	2	54	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10811976--10812025	20	2.6	20	93	6	86	40	4	6	50	1.46
10817316--10817364	23	2.2	23	85	3	64	14	4	2	79	0.97
10817406--10817444	17	2.3	17	86	8	53	20	2	2	74	1.06
10817412--10817460	17	2.7	18	84	12	64	16	6	2	75	1.09
10818058--10818096	16	2.4	17	83	12	55	71	0	0	28	0.86
10818337--10818391	28	2.0	26	82	6	65	38	3	9	49	1.52
10821906--10821940	16	2.2	16	89	0	52	37	5	22	34	1.78
10821704--10822480	385	2.0	378	91	7	1240	38	12	15	32	1.86
10830692--10830737	19	2.4	19	88	0	74	19	26	15	39	1.91
10834683--10834707	13	1.9	13	100	0	50	20	16	8	56	1.65
10844556--10844601	20	2.2	21	85	14	69	34	26	13	26	1.92
10845146--10845170	9	2.8	9	100	0	50	88	0	12	0	0.53
10847116--10847157	22	1.9	22	90	0	66	35	26	11	26	1.91
10847449--10847571	45	2.8	44	74	9	124	33	4	19	42	1.73
10847680--10847933	18	14.5	18	73	6	191	26	12	14	46	1.81
10847680--10847849	53	3.2	53	82	4	193	25	11	15	47	1.79
10847684--10847923	35	6.8	35	75	6	144	27	12	14	45	1.81
10847825--10847933	53	2.1	51	84	3	137	26	14	14	44	1.84
10847763--10848114	17	20.5	17	68	8	72	30	15	12	41	1.84
10847954--10848113	34	4.7	34	82	3	144	31	15	11	41	1.83
10848154--10848214	18	3.4	18	69	0	50	29	14	14	40	1.86
10848537--10848604	29	2.2	33	80	17	76	19	7	2	70	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10855604--10855677	32	2.3	32	84	11	89	10	2	36	50	1.52
10855601--10855766	19	8.7	19	68	16	58	13	1	34	50	1.53
10857736--10858090	50	7.1	51	74	13	251	40	13	16	29	1.87
10857736--10858101	49	7.4	49	75	10	262	40	13	16	29	1.87
10857747--10858093	149	2.3	149	81	4	389	39	13	17	29	1.88
10858783--10858872	32	2.8	32	80	11	94	26	12	15	45	1.81
10858922--10858995	31	2.4	31	81	0	85	22	21	16	39	1.92
10861316--10861347	13	2.5	13	94	0	55	6	18	0	75	1.01
10865095--10865174	38	2.1	38	83	2	99	38	8	18	33	1.82
10865001--10865191	37	5.1	38	75	4	120	32	9	21	35	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133