genome.fa.s645.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  17  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4229940--4230113	87	2.0	86	97	1	330	33	6	4	54	1.48
4231169--4231216	17	2.6	19	74	9	55	54	0	2	43	1.12
4234682--4234758	37	2.1	37	92	0	127	40	11	5	42	1.64
4247695--4247811	18	6.5	18	72	16	82	52	4	0	42	1.20
4247707--4247764	27	2.2	26	79	11	64	58	3	0	37	1.15
4247748--4247826	21	3.8	21	73	15	83	53	3	0	43	1.19
4247753--4247832	41	2.0	39	85	4	106	52	3	1	42	1.27
4247861--4247916	19	3.1	18	82	7	69	42	1	0	55	1.10
4247877--4247974	32	3.5	27	71	22	85	45	0	0	54	1.00
4247921--4247992	26	3.0	24	78	13	69	43	0	1	55	1.08
4247909--4247974	26	2.6	26	90	4	100	46	0	0	53	1.00
4248060--4248096	14	2.6	14	91	8	58	32	0	2	64	1.07
4251252--4251290	19	2.1	19	95	0	69	25	12	5	56	1.57
4277079--4277116	20	2.0	20	89	5	60	2	13	2	81	0.90
4277844--4277888	16	2.8	16	83	10	65	11	4	4	80	1.01
4278099--4278134	17	2.1	17	94	0	63	19	5	16	58	1.58
4278361--4278411	13	3.7	13	76	19	50	23	1	3	70	1.14
4278360--4278415	15	3.9	14	76	6	58	25	1	3	69	1.14
4279247--4279327	13	6.3	13	70	17	53	62	0	1	35	1.03
4279263--4279343	22	3.4	22	76	23	92	65	0	1	33	1.01
4279244--4279344	50	2.0	50	98	0	193	62	0	1	35	1.07
4279263--4279380	50	2.3	50	85	8	150	64	3	0	31	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4279419--4279474	19	2.9	20	74	15	55	57	1	1	39	1.20
4290153--4290411	130	2.0	131	82	0	322	39	11	11	36	1.79
4290925--4290977	27	2.1	24	86	10	70	50	5	0	43	1.25
4291117--4291176	29	2.1	29	81	6	68	48	5	1	45	1.34
4291330--4291377	14	3.2	14	81	16	60	54	0	2	43	1.12
4291340--4291388	17	2.9	17	87	0	62	59	0	0	40	0.98
4291543--4291580	20	1.9	19	89	5	58	50	0	0	50	1.00
4298435--4298810	144	2.6	144	78	7	393	40	18	10	30	1.84
4298442--4298810	48	7.6	48	78	7	298	40	18	10	30	1.84
4298442--4298800	96	3.7	96	76	7	339	41	18	10	29	1.84
4310812--4310862	16	3.2	16	81	15	61	5	1	23	68	1.22
4311174--4311231	14	4.1	14	79	0	62	79	0	20	0	0.74
4311193--4311226	9	3.9	9	84	7	52	88	0	11	0	0.52
4311177--4311231	28	2.0	28	88	0	83	80	0	20	0	0.72
4311750--4311839	46	2.0	46	86	0	126	43	16	8	31	1.79
4312188--4312362	64	2.7	64	82	2	208	40	8	24	26	1.84
4312533--4312832	86	3.5	85	80	4	320	35	14	18	31	1.91
4312710--4312784	17	4.4	17	74	5	71	32	16	18	33	1.93
4312710--4312790	34	2.4	34	77	8	83	34	16	18	30	1.93
4313544--4313581	16	2.4	16	86	4	51	78	7	0	13	0.94
4314078--4314140	20	3.2	19	77	4	72	47	26	6	19	1.73
4314510--4314550	15	2.8	16	89	10	61	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4315585--4315660	17	4.4	17	70	8	57	30	13	19	36	1.90
4315654--4315697	17	2.6	17	81	0	52	45	11	22	20	1.83
4320835--4320907	23	3.2	23	71	23	64	76	4	2	16	1.05
4320875--4320919	19	2.5	19	89	7	67	82	2	2	13	0.86
4320845--4320919	23	3.3	23	78	14	82	77	4	4	14	1.06
4320822--4320919	46	2.1	47	83	5	119	77	5	3	14	1.06
4321754--4321801	5	9.4	5	83	2	51	77	0	4	18	0.93
4321864--4321895	15	2.2	14	94	5	55	53	6	0	40	1.26
4321903--4321967	12	5.5	12	77	15	55	53	4	7	33	1.50
4326852--4326878	4	6.8	4	100	0	54	77	0	0	22	0.76
4327793--4327882	46	2.0	46	91	4	146	45	18	6	28	1.75
4328242--4328302	24	2.5	24	84	7	79	54	9	3	32	1.50
4328344--4328409	32	2.1	32	85	2	89	56	13	3	27	1.52
4328390--4328621	33	7.2	32	68	19	108	55	11	5	28	1.56
4328424--4328526	22	4.8	20	72	12	80	55	11	4	28	1.56
4328438--4328526	23	4.0	22	78	10	101	56	11	4	28	1.54
4328424--4328526	43	2.4	43	85	1	136	55	11	4	28	1.56
4328424--4328537	23	5.2	22	75	14	85	56	12	4	27	1.55
4328500--4328704	71	3.1	64	78	11	166	56	8	3	31	1.47
4328500--4328633	62	2.1	64	83	6	166	57	8	3	29	1.47
4328605--4328836	24	10.0	24	72	15	202	53	8	3	34	1.49
4328596--4328775	71	2.5	71	98	0	342	54	6	3	35	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4328676--4328828	47	3.4	45	80	12	154	54	9	3	32	1.48
4328761--4328806	20	2.2	20	88	3	65	56	10	2	30	1.46
4328748--4328836	21	4.1	21	72	13	72	53	10	3	32	1.51
4328842--4328876	19	1.9	17	88	11	52	45	11	11	31	1.76
4329490--4329527	17	2.4	17	86	8	53	71	5	0	23	1.07
4329484--4329527	17	2.7	15	82	10	52	68	6	0	25	1.14
4333261--4333297	19	1.9	20	88	5	58	67	10	21	0	1.21
4333605--4333664	7	9.1	7	75	14	65	1	13	0	85	0.69
4333604--4333662	20	3.1	19	80	7	75	1	11	0	86	0.65
4333604--4333661	12	4.6	12	85	8	80	1	12	0	86	0.65
4334658--4334700	15	2.9	14	77	16	50	23	0	4	72	1.04
4334665--4334708	15	3.1	14	81	12	54	29	0	2	68	1.02
4335965--4336002	16	2.3	17	86	13	53	78	13	2	5	1.02
4347053--4347217	48	3.4	48	84	7	210	30	7	18	42	1.79
4347056--4347237	48	3.8	48	79	7	174	30	9	19	40	1.83
4347202--4347424	44	5.3	42	77	10	222	30	13	16	40	1.86
4347291--4347412	38	3.1	37	71	21	120	26	14	18	40	1.89
4347247--4347412	82	2.0	81	94	1	287	27	13	17	40	1.88
4347588--4347656	26	2.9	24	81	14	72	7	13	0	79	0.92
4347599--4347669	20	3.4	19	74	16	52	4	16	0	78	0.90
4347594--4347667	22	3.5	21	78	17	73	5	14	0	79	0.90
4354415--4354471	22	2.7	21	78	7	71	77	0	1	21	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4354415--4354466	7	7.4	7	74	8	52	78	0	1	19	0.84
4354754--4354798	2	23.0	2	84	4	56	46	2	2	48	1.26
4357832--4358213	213	1.8	210	78	6	439	35	12	7	44	1.70
4358280--4358317	20	1.9	19	85	15	51	76	0	0	23	0.79
4358962--4359006	18	2.5	17	82	7	54	80	0	17	2	0.82
4359209--4359752	51	10.6	50	80	11	425	36	22	12	28	1.91
4359350--4359504	58	2.7	57	82	4	172	36	22	12	28	1.90
4359463--4359752	48	5.9	48	83	7	262	37	22	12	28	1.90
4359529--4359753	100	2.3	98	84	4	283	37	22	12	27	1.91
4367866--4367899	15	2.2	16	89	5	52	29	0	2	67	1.05
4371492--4371533	20	2.3	17	88	12	57	21	0	2	76	0.90
4379219--4379268	24	2.1	23	81	3	55	78	10	2	10	1.06
4380037--4380067	15	2.1	15	93	0	53	19	0	0	80	0.71
4380381--4380636	42	6.1	40	79	8	239	43	17	12	26	1.85
4380446--4380636	42	4.6	42	87	2	278	46	15	10	26	1.79
4380381--4380636	83	3.1	82	81	8	277	43	17	12	26	1.85
4380813--4380855	16	2.7	16	81	0	50	37	4	18	39	1.72
4380996--4381050	21	2.5	22	76	2	58	36	18	10	34	1.86
4381467--4381588	63	1.9	63	86	0	172	32	27	9	30	1.88
4382249--4382297	17	2.9	17	87	3	73	8	22	0	69	1.14
4382293--4382317	13	1.9	13	100	0	50	12	0	0	88	0.53
4382493--4382533	20	2.0	20	100	0	82	53	0	21	24	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4385211--4385262	23	2.3	23	86	6	70	51	3	19	25	1.63
4385228--4385275	23	2.1	22	85	14	62	54	2	16	27	1.54
4387594--4387638	22	2.0	22	87	8	65	6	15	15	62	1.52
4388519--4388554	16	2.2	16	90	0	54	52	5	0	41	1.24
4389174--4389207	3	11.3	3	100	0	68	0	32	0	67	0.91
4392263--4392314	27	2.0	27	88	3	79	38	11	7	42	1.70
4392516--4392564	21	2.4	20	86	10	64	53	0	0	46	1.00
4392532--4392575	21	2.2	20	88	8	63	59	0	0	40	0.98
4395183--4395214	2	16.0	2	93	0	55	50	0	3	46	1.17
4396835--4396867	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133