genome.fa.s645.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  43  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9372616--9372683	26	2.6	25	78	15	84	48	1	2	47	1.26
9372673--9372727	17	3.1	19	72	27	57	56	0	0	43	0.99
9372673--9372742	17	4.2	17	69	27	51	58	0	0	41	0.98
9372659--9372727	36	1.9	35	83	13	88	52	0	0	47	1.00
9372673--9372747	34	2.1	38	82	9	95	60	0	0	40	0.97
9372706--9372747	20	2.1	20	86	8	59	66	0	0	33	0.92
9372718--9372747	15	2.1	15	93	6	53	70	0	0	30	0.88
9372763--9372885	15	8.6	15	73	20	77	43	0	0	55	1.05
9372764--9372888	23	5.5	23	71	15	84	44	0	0	55	1.05
9372772--9372859	31	2.9	30	78	11	88	45	0	1	53	1.07
9372763--9372903	54	2.7	53	80	8	146	44	0	1	53	1.09
9372822--9372879	10	5.3	10	79	18	62	43	0	0	56	0.99
9387595--9387634	9	4.4	9	81	12	55	82	0	10	7	0.84
9387922--9387962	9	4.8	9	82	11	50	80	2	14	2	0.92
9387914--9387962	16	2.9	16	84	6	53	81	2	12	4	0.91
9388972--9389126	45	3.5	43	73	10	132	34	8	17	40	1.80
9388961--9389143	90	2.0	91	85	7	248	35	8	15	40	1.77
9389549--9389622	32	2.3	32	88	2	112	39	17	6	36	1.76
9389550--9389628	16	4.9	16	85	1	95	37	16	8	36	1.80
9389661--9389696	17	2.1	17	100	0	72	33	16	16	33	1.92
9389801--9389844	17	2.5	17	88	3	61	43	9	9	38	1.68
9390280--9390327	17	2.9	16	78	3	51	20	2	10	66	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9391221--9391267	19	2.5	19	80	12	53	29	6	0	63	1.19
9393925--9394063	44	3.1	43	71	13	111	37	9	15	38	1.79
9393936--9394090	45	3.5	43	70	11	116	36	8	17	38	1.80
9393925--9394090	90	1.8	90	86	7	239	35	8	16	39	1.79
9393925--9394177	91	2.8	86	78	14	217	38	8	14	39	1.76
9394513--9394544	16	2.0	16	100	0	64	37	18	6	37	1.76
9394732--9394775	17	2.5	17	88	3	61	43	9	9	38	1.68
9395223--9395261	18	2.2	18	85	0	51	15	2	12	69	1.30
9402680--9402717	13	2.9	13	96	0	67	18	23	2	55	1.55
9405691--9405752	23	2.7	23	89	2	88	33	35	14	16	1.89
9408552--9408636	41	2.1	41	91	4	136	43	11	18	25	1.84
9421115--9421191	38	2.0	39	89	2	120	19	16	14	49	1.80
9433423--9433461	18	2.2	18	86	4	53	43	0	2	53	1.14
9439849--9439891	22	2.0	22	86	9	61	30	25	11	32	1.91
9441368--9441400	2	16.5	2	100	0	66	0	51	0	48	1.00
9451591--9451632	6	7.0	6	89	10	68	19	50	0	30	1.48
9454808--9454857	25	2.0	25	100	0	100	36	12	20	32	1.89
9457584--9457620	2	18.5	2	100	0	74	51	0	0	48	1.00
9459733--9459859	49	2.6	49	87	1	182	30	7	19	41	1.80
9459928--9459990	28	2.2	28	88	0	90	17	17	20	44	1.87
9460012--9460133	47	2.6	47	80	3	131	19	18	21	40	1.92
9460203--9460300	47	2.1	46	81	5	108	25	20	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9460025--9460418	214	1.8	215	85	1	558	21	18	17	42	1.89
9460465--9460555	37	2.5	37	87	0	137	24	18	5	51	1.67
9461135--9461171	3	12.3	3	100	0	74	67	0	0	32	0.91
9461170--9461197	3	9.3	3	100	0	56	32	0	32	35	1.58
9461415--9461896	240	2.0	240	97	0	910	34	8	11	45	1.70
9462011--9462069	21	2.9	21	73	14	61	49	10	3	37	1.54
9463805--9463881	35	2.2	36	81	11	88	36	16	10	36	1.83
9463887--9463957	36	2.0	36	86	5	99	36	11	16	35	1.85
9463887--9463987	18	5.7	18	73	12	84	34	11	17	35	1.87
9463898--9464006	35	3.1	35	81	6	114	33	13	17	34	1.89
9465529--9465569	3	13.7	3	100	0	82	68	0	0	31	0.90
9465960--9466069	17	6.2	17	72	11	96	50	13	7	28	1.68
9465991--9466093	36	2.9	36	85	4	129	53	12	6	27	1.63
9465969--9466078	35	3.1	36	83	5	127	50	13	8	28	1.70
9466018--9466078	17	3.4	18	88	6	97	54	13	6	26	1.63
9466075--9466192	20	6.2	20	75	10	68	37	11	16	34	1.85
9466067--9466192	18	6.7	20	76	13	124	38	11	15	34	1.83
9466050--9466192	75	1.9	75	81	5	173	40	11	13	33	1.82
9466067--9466193	57	2.2	57	83	9	170	38	11	15	34	1.83
9466186--9466297	42	2.6	43	85	5	154	40	14	14	31	1.86
9466448--9466677	43	5.3	44	79	7	238	48	15	7	28	1.73
9466448--9466679	87	2.7	85	75	15	240	48	15	8	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9467959--9468000	12	3.6	12	83	3	50	26	4	7	61	1.42
9467967--9468048	6	13.3	6	78	5	56	25	4	7	62	1.42
9468108--9468164	19	2.9	20	86	2	80	15	1	10	71	1.21
9469116--9469190	23	3.5	22	76	14	84	14	6	10	68	1.39
9469130--9469189	19	2.9	19	78	11	57	13	6	11	68	1.39
9469159--9469213	18	3.1	18	81	5	76	14	3	10	70	1.28
9469140--9469213	35	2.1	37	87	10	109	13	5	10	70	1.32
9469160--9469220	17	3.5	17	78	10	70	18	3	9	68	1.31
9469244--9469280	16	2.3	17	86	9	51	24	8	10	56	1.60
9469300--9469470	55	3.1	55	86	4	229	24	5	15	54	1.63
9469341--9469431	23	3.2	29	69	26	77	26	4	14	54	1.58
9469361--9469410	20	2.3	23	83	10	70	28	6	14	52	1.65
9469361--9469416	20	2.6	22	77	8	53	28	5	12	53	1.60
9469409--9469479	23	3.3	21	72	16	65	25	5	12	56	1.58
9469552--9469599	25	2.0	24	87	4	69	35	4	10	50	1.56
9469693--9469828	20	6.9	18	73	18	94	33	4	11	50	1.59
9469748--9469823	38	2.0	40	82	10	95	38	2	7	51	1.45
9469696--9469828	58	2.2	62	84	9	177	33	4	12	49	1.60
9480357--9480538	43	4.3	43	80	7	221	27	13	20	38	1.90
9480802--9480865	18	3.6	18	77	8	51	25	4	7	62	1.42
9480832--9480889	6	9.3	6	83	7	62	24	3	5	67	1.27
9480826--9480872	19	2.5	18	79	6	58	21	4	8	65	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9480833--9480898	25	2.6	25	73	4	62	25	6	4	63	1.37
9480901--9480951	20	2.6	20	76	11	52	80	3	9	5	1.01
9480961--9481014	26	2.1	25	82	3	63	22	1	11	64	1.35
9481969--9482035	20	3.3	20	82	13	77	14	2	13	68	1.32
9481984--9482054	17	3.9	18	83	10	83	14	1	15	69	1.27
9482165--9482202	20	1.9	20	88	0	58	28	5	10	55	1.56
9482146--9482304	55	2.9	55	84	4	196	25	4	13	56	1.56
9482259--9482310	23	2.3	23	89	0	77	21	1	13	63	1.39
9482272--9482326	23	2.4	23	84	3	67	30	3	5	60	1.37
9482208--9482355	78	1.9	78	84	2	199	27	3	12	57	1.50
9482451--9482512	24	2.6	24	85	7	81	33	1	11	53	1.46
9482635--9482747	20	5.9	20	74	12	94	38	4	7	49	1.52
9484291--9484350	24	2.5	23	71	23	61	36	23	3	36	1.71
9485399--9485456	29	2.0	28	83	9	73	44	6	15	32	1.73
9485844--9485891	22	2.2	22	96	0	87	60	2	8	29	1.37
9485850--9485897	22	2.2	22	88	0	69	66	2	8	22	1.29
9487624--9487664	9	4.6	9	85	11	57	43	17	14	24	1.86
9487616--9487653	18	2.2	18	90	9	62	50	15	13	21	1.78
9489321--9489348	14	2.0	14	100	0	56	0	7	0	92	0.37
9494855--9494904	14	3.7	14	84	7	68	72	0	0	28	0.86
9494854--9494914	13	4.5	13	81	2	50	72	0	1	26	0.94
9496073--9496107	3	11.7	3	100	0	70	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9496106--9496143	3	12.7	3	100	0	76	34	0	0	65	0.93
9497633--9497687	14	3.8	15	73	21	55	32	0	1	65	1.03
9497626--9497691	28	2.7	22	70	26	53	30	0	1	68	0.99
9498069--9498148	29	2.8	29	74	12	76	61	1	18	18	1.42
9498639--9498690	23	2.3	21	76	23	52	40	1	3	53	1.30
9500182--9500236	21	2.5	22	82	2	67	18	3	30	47	1.66
9504396--9504938	274	2.0	281	82	6	669	48	6	9	36	1.61
9505260--9505303	9	5.0	8	80	20	52	63	0	0	36	0.95
9505260--9505303	19	2.5	17	85	10	61	63	0	0	36	0.95
9505249--9505304	9	6.1	9	74	12	51	60	0	0	39	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133