genome.fa.s645.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  119  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22830823--22830873	18	2.8	18	79	5	59	78	13	5	1	1.02
22832107--22832133	13	2.1	13	100	0	54	14	0	14	70	1.17
22832100--22832156	29	2.0	29	82	6	71	19	0	10	70	1.16
22832101--22832140	18	2.2	18	90	0	62	17	0	12	70	1.18
22836149--22836197	17	2.8	17	78	3	53	57	2	2	38	1.22
22836216--22836258	18	2.5	18	82	17	56	74	0	4	20	1.00
22840229--22840320	48	1.9	48	95	0	166	31	21	20	26	1.98
22842468--22842522	19	2.9	20	81	10	62	21	3	0	74	0.97
22842972--22843011	19	2.0	19	85	9	53	40	7	0	52	1.30
22843456--22843574	4	29.2	4	71	9	80	21	2	6	69	1.23
22843574--22843714	60	2.4	60	83	3	196	42	9	13	34	1.76
22843574--22843723	59	2.5	59	78	6	178	46	8	12	32	1.73
22845753--22845793	18	2.4	16	88	8	55	24	2	12	60	1.43
22846070--22846118	13	3.8	13	82	15	57	24	0	2	73	0.94
22846066--22846119	14	3.9	14	75	18	51	25	0	1	72	0.95
22846095--22846140	23	2.0	22	87	4	65	21	6	0	71	1.08
22846103--22846146	23	2.0	23	81	4	54	25	11	0	63	1.27
22848179--22848225	3	15.7	3	100	0	94	68	0	0	31	0.90
22849412--22849447	15	2.3	16	85	4	56	0	13	5	80	0.88
22860113--22860226	45	2.5	46	77	8	117	31	15	13	39	1.86
22860267--22860313	5	10.0	5	86	9	55	82	14	0	2	0.75
22862770--22862809	19	2.0	20	85	14	55	42	15	2	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22864895--22865008	45	2.5	46	78	8	126	30	15	14	39	1.87
22865049--22865095	5	10.0	5	86	9	64	82	17	0	0	0.66
22865786--22865825	19	2.2	18	86	13	55	77	20	2	0	0.88
22867879--22867910	2	16.5	2	93	6	57	50	0	0	50	1.00
22870782--22870830	17	2.8	17	78	3	53	57	2	2	38	1.22
22870849--22870891	18	2.5	18	82	17	56	74	0	4	20	1.00
22874867--22874958	48	1.9	48	95	0	166	31	21	20	26	1.98
22877042--22877082	14	2.9	14	85	3	55	24	0	0	75	0.80
22877092--22877149	28	2.1	28	83	6	73	17	1	5	75	1.06
22877688--22878327	321	2.0	320	94	0	1118	37	20	15	25	1.92
22878393--22878560	4	42.0	4	76	10	148	22	1	5	71	1.13
22878418--22878465	19	2.5	20	80	10	55	18	2	6	72	1.15
22878394--22878560	33	5.0	32	79	11	142	21	1	5	71	1.12
22878484--22878575	29	3.3	29	83	7	93	26	0	3	70	1.02
22878618--22878759	61	2.4	59	84	5	178	43	9	14	33	1.76
22887112--22887195	37	2.3	37	79	4	89	17	0	35	46	1.49
22887141--22887309	58	2.9	57	78	3	171	17	2	33	46	1.61
22887023--22887318	30	10.3	29	68	14	100	19	2	31	46	1.61
22887243--22887326	28	3.0	27	75	5	87	19	0	30	50	1.48
22887676--22887719	20	2.3	18	78	14	52	27	0	0	72	0.85
22887688--22887721	6	5.3	6	93	6	50	20	0	0	79	0.73
22888535--22888568	15	2.2	16	94	5	61	0	0	8	91	0.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22888514--22888568	28	2.0	29	85	7	78	3	1	12	81	0.89
22889688--22889992	165	1.9	162	88	5	461	24	8	10	56	1.60
22925954--22926041	44	2.0	44	97	0	167	31	12	20	35	1.90
22926324--22926348	3	8.3	3	100	0	50	32	0	0	68	0.90
22928566--22928642	37	2.1	37	100	0	154	35	10	18	36	1.85
22928598--22929416	339	2.3	344	90	7	1267	33	18	18	28	1.95
22932500--22932550	24	2.1	24	96	0	93	21	0	11	66	1.23
22938005--22938045	21	1.9	22	85	5	57	58	2	2	36	1.24
22944123--22944192	28	2.5	28	88	4	97	37	11	12	38	1.80
22945944--22946002	26	2.2	27	81	3	66	50	0	0	49	1.00
22947308--22947356	19	2.5	19	81	18	57	85	6	4	4	0.81
22947308--22947357	20	2.5	21	87	12	70	86	6	4	4	0.80
22948294--22948343	22	2.4	20	76	6	55	26	4	12	58	1.51
22952592--22952640	17	2.8	17	78	3	53	57	2	2	38	1.22
22952659--22952701	18	2.5	18	82	17	56	74	0	4	20	1.00
22958942--22958989	15	3.1	15	80	14	62	75	2	4	18	1.07
22959156--22959186	15	2.0	16	93	6	55	70	3	0	25	1.02
22965096--22965142	21	2.1	23	92	7	80	70	6	6	17	1.30
22967001--22967161	86	1.9	87	84	3	218	32	21	15	30	1.94
22967146--22967199	23	2.3	23	84	6	65	25	25	18	29	1.98
22969036--22969101	34	1.9	34	87	0	96	34	10	10	43	1.74
22969874--22970264	58	6.7	58	82	4	459	37	12	7	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22970110--22970198	27	3.1	27	64	22	65	40	12	6	40	1.69
22970284--22970344	6	9.7	6	80	8	59	77	0	4	18	0.95
22970284--22970349	10	6.1	11	78	15	66	77	0	4	18	0.94
22971344--22971407	14	4.8	14	70	16	55	62	4	4	28	1.35
22971365--22971518	4	39.5	4	67	18	76	70	2	3	23	1.14
22971376--22971523	7	20.1	7	69	22	58	71	2	2	22	1.11
22971372--22971456	25	3.2	25	73	18	66	68	2	2	27	1.14
22971365--22971534	76	2.4	69	76	15	161	71	2	2	23	1.12
22971424--22971551	38	3.2	39	79	13	127	75	2	2	20	1.03
22971479--22971550	7	10.6	7	76	20	64	77	1	0	20	0.84
22971469--22971550	15	5.4	15	80	11	78	78	1	1	19	0.89
22971737--22972158	43	10.0	43	87	4	556	39	18	15	25	1.91
22971737--22972158	85	5.0	84	87	5	550	39	18	15	25	1.91
22971737--22972166	127	3.4	125	86	6	562	39	19	15	25	1.91
22973141--22973225	7	11.7	7	72	19	59	5	15	0	78	0.93
22973123--22973224	32	3.0	34	72	18	88	6	19	0	73	1.05
22973147--22973225	18	4.8	16	69	27	58	6	15	0	78	0.94
22973141--22973199	15	3.9	15	76	10	57	3	16	0	79	0.86
22973141--22973224	22	3.5	24	76	15	75	5	15	0	78	0.93
22973165--22973203	15	2.7	15	92	4	62	7	12	0	79	0.93
22973147--22973237	9	9.6	9	70	16	51	7	13	0	79	0.94
22980416--22980511	31	3.2	31	63	28	80	35	14	10	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22980371--22980585	118	1.8	117	89	5	335	37	13	8	40	1.75
22980369--22980589	59	3.8	58	86	5	302	36	14	8	41	1.75
22980669--22980721	22	2.5	22	84	6	65	71	1	0	26	0.96
22981618--22981714	27	3.8	26	74	14	78	61	5	3	29	1.33
22981726--22981759	18	1.9	18	88	5	52	73	0	2	23	0.97
22981735--22981833	15	6.4	15	82	11	112	75	1	1	22	0.92
22981693--22981833	38	3.6	38	77	20	98	73	2	2	21	1.04
22987886--22988748	236	3.7	236	88	0	1262	32	15	15	36	1.88
22996616--22996667	18	2.9	17	80	11	59	15	3	3	76	1.07
22997064--22997347	144	2.0	143	97	0	532	33	11	13	41	1.80
22997751--22997896	4	36.0	4	72	10	109	21	1	6	71	1.16
22997741--22997888	25	6.0	24	71	22	85	20	2	6	70	1.20
22997848--22997911	29	2.2	28	81	8	74	26	0	4	68	1.09
22997932--22998199	59	4.5	59	76	10	199	44	10	13	31	1.78
22997962--22998141	63	3.0	58	81	8	191	43	10	13	32	1.78
23000153--23000195	17	2.5	18	85	11	63	23	2	16	58	1.50
23000514--23000559	23	2.0	22	83	4	56	19	8	0	71	1.11
23002599--23002627	3	9.7	3	100	0	58	68	0	0	31	0.89
23013338--23013434	33	2.8	35	82	4	117	32	29	7	29	1.84
23013338--23013434	18	5.6	18	78	7	101	32	29	7	29	1.84
23015443--23015485	21	2.0	21	81	0	50	74	2	6	16	1.14
23020044--23020105	24	2.6	24	82	5	63	40	16	24	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23021520--23021571	27	1.9	27	92	0	86	51	15	25	7	1.69
23026841--23026904	21	3.0	21	93	0	101	43	0	28	28	1.55
23028941--23028973	16	1.9	18	88	11	52	57	3	0	39	1.14
23035067--23035104	19	2.1	19	90	9	62	36	50	7	5	1.54
23035721--23035766	18	2.4	19	89	7	67	80	2	15	2	0.91
23040062--23040098	18	2.0	19	89	5	58	72	2	0	24	0.97
23042931--23042974	3	14.7	3	90	0	70	63	2	0	34	1.07
23042952--23043002	17	3.2	16	77	5	50	66	0	0	33	0.92
23043060--23043122	23	2.7	23	87	4	92	15	58	12	12	1.63
23043077--23043116	12	3.4	12	79	6	55	22	55	12	10	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133