genome.fa.s645.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  100  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19457576--19457626	21	2.5	21	93	3	86	49	0	0	50	1.00
19458474--19458517	23	1.9	23	81	9	54	54	0	0	45	0.99
19458500--19458555	18	3.2	18	77	10	71	64	0	0	35	0.94
19458498--19458559	16	3.7	16	77	10	70	62	0	0	37	0.95
19459047--19459084	16	2.3	17	81	9	51	44	0	0	55	0.99
19460676--19460726	23	2.3	21	80	6	57	50	5	5	37	1.51
19462836--19462867	15	2.0	17	88	11	50	43	15	18	21	1.87
19468026--19468062	2	18.5	2	100	0	74	51	0	0	48	1.00
19468062--19468087	2	13.0	2	100	0	52	50	0	50	0	1.00
19468520--19468548	3	9.7	3	100	0	58	65	0	0	34	0.93
19472260--19472435	72	2.5	72	84	2	230	41	7	3	47	1.49
19475898--19475957	29	2.1	29	87	6	86	18	6	15	60	1.56
19476151--19476208	9	6.3	9	74	4	53	63	12	8	15	1.50
19482625--19482901	43	6.5	42	74	10	152	45	11	14	28	1.79
19482625--19482899	86	3.2	85	76	8	272	45	11	14	28	1.79
19482675--19482901	43	5.3	41	73	8	161	46	10	14	28	1.78
19482974--19483016	22	2.0	22	85	0	59	55	20	11	11	1.66
19482999--19483149	65	2.3	65	82	4	180	54	11	14	19	1.71
19483490--19483536	17	2.7	18	83	9	53	51	14	8	25	1.71
19483648--19483705	17	3.4	17	83	11	73	39	15	15	29	1.88
19484267--19484373	46	2.3	46	82	3	126	46	12	4	36	1.62
19484313--19484544	22	10.4	22	66	16	102	45	12	7	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19484196--19484539	44	7.7	45	75	9	274	45	13	7	34	1.71
19486121--19486153	14	2.4	14	90	10	50	9	12	0	78	0.95
19487353--19487600	134	1.9	131	83	7	322	47	13	11	27	1.77
19505152--19505190	2	19.5	2	100	0	78	51	0	0	48	1.00
19506135--19506229	47	2.0	47	93	4	165	47	4	3	45	1.38
19509728--19509764	18	2.1	18	89	0	56	78	0	2	18	0.87
19509887--19509939	23	2.3	24	75	12	58	32	0	5	62	1.19
19515017--19515061	2	22.5	2	100	0	90	51	0	0	48	1.00
19523223--19523280	19	2.6	24	71	28	72	32	3	31	32	1.75
19523238--19523275	19	2.0	19	100	0	76	26	5	31	36	1.79
19523913--19523955	12	3.5	12	87	12	61	37	0	0	62	0.95
19523898--19523955	25	2.2	28	82	14	79	36	1	1	60	1.17
19524487--19524587	49	2.0	50	92	1	168	31	8	11	47	1.71
19524867--19524900	2	17.0	2	100	0	68	50	0	0	50	1.00
19526341--19526413	34	2.1	34	87	0	101	36	20	10	31	1.87
19528286--19528373	29	3.0	30	72	3	88	44	15	4	35	1.68
19531719--19531782	33	1.9	33	81	6	76	40	15	15	28	1.88
19535362--19535392	2	15.5	2	100	0	62	51	0	48	0	1.00
19539114--19539166	28	1.9	28	85	11	74	33	3	5	56	1.41
19539119--19539187	35	2.0	34	86	8	95	30	4	4	60	1.35
19539845--19539950	49	2.2	49	84	3	142	22	16	29	31	1.96
19540865--19540914	24	2.0	26	84	7	68	28	12	20	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19550716--19550751	18	2.0	18	88	0	54	19	0	33	47	1.50
19552961--19552987	2	13.5	2	100	0	54	51	0	0	48	1.00
19555349--19555378	2	15.5	2	93	6	53	0	46	0	53	1.00
19559848--19560243	203	2.0	203	82	5	487	32	18	12	36	1.88
19564315--19564342	3	9.3	3	100	0	56	35	0	0	64	0.94
19565956--19566457	144	3.5	143	79	3	488	41	12	13	32	1.81
19567575--19568365	161	4.9	161	75	8	519	42	13	10	33	1.78
19569456--19569492	13	2.8	13	91	0	65	59	8	8	24	1.53
19570838--19570892	29	1.9	28	82	10	67	69	1	23	5	1.19
19570848--19570901	21	2.6	21	76	5	56	68	1	27	1	1.10
19571626--19571669	19	2.3	19	88	0	70	40	31	0	27	1.56
19572162--19572189	8	3.5	8	100	0	56	78	0	21	0	0.75
19574829--19574867	19	2.1	19	85	0	51	41	43	2	12	1.56
19574900--19574941	13	3.2	13	83	6	57	38	38	7	16	1.76
19580462--19580510	3	16.3	3	100	0	98	32	0	0	67	0.91
19580581--19580612	3	10.3	3	93	6	55	31	3	0	65	1.08
19580480--19580688	102	2.1	102	98	0	402	27	13	7	51	1.68
19582125--19582205	42	1.9	42	84	0	108	34	19	7	38	1.80
19585347--19585396	21	2.4	21	93	6	84	62	16	6	16	1.52
19585347--19585394	10	4.6	10	76	7	51	64	14	4	16	1.43
19586546--19586601	6	9.2	6	80	18	53	1	16	7	75	1.11
19586742--19586785	19	2.3	19	96	0	79	79	4	4	11	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19591008--19591045	8	4.8	8	86	0	58	60	13	2	23	1.45
19591340--19591377	16	2.5	15	88	12	60	68	0	0	31	0.90
19591340--19591378	15	2.6	16	92	8	64	69	0	0	30	0.89
19597165--19597232	30	2.2	30	84	5	82	16	8	25	50	1.73
19597390--19597415	2	13.0	2	100	0	52	50	0	50	0	1.00
19597362--19597406	20	2.3	19	81	11	54	57	0	42	0	0.98
19597748--19597797	9	5.0	10	79	11	50	86	2	4	8	0.78
19598158--19598270	50	2.3	51	78	9	126	55	6	11	26	1.59
19602210--19602293	27	3.0	27	75	17	75	77	2	13	7	1.07
19602231--19602285	21	2.6	20	85	8	74	80	1	10	7	0.99
19603367--19603413	21	2.2	21	88	0	67	40	8	8	42	1.66
19603481--19603521	21	2.0	21	85	0	55	41	7	12	39	1.70
19603535--19603585	22	2.2	23	83	13	61	29	15	15	39	1.89
19603555--19603597	16	2.6	16	81	3	50	34	13	11	39	1.82
19603779--19604449	41	16.1	41	78	6	503	23	14	17	45	1.85
19603781--19604242	245	1.9	244	89	3	714	22	14	16	46	1.82
19603779--19604248	163	2.9	161	78	5	451	23	14	16	46	1.83
19604201--19604298	49	2.0	50	86	6	137	23	12	18	45	1.83
19604286--19604415	40	3.2	40	74	14	113	23	14	20	42	1.88
19618484--19618530	2	23.5	2	100	0	94	48	0	0	51	1.00
19623772--19623832	28	2.2	28	86	13	83	44	3	4	47	1.41
19623784--19623845	28	2.2	28	83	8	74	51	3	3	41	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19623874--19623938	28	2.3	29	76	15	73	40	3	1	55	1.25
19625560--19625614	22	2.5	23	88	11	89	50	0	0	49	1.00
19627780--19627872	47	2.0	47	93	0	159	47	4	3	45	1.38
19628462--19628502	21	1.9	22	85	5	57	46	9	4	39	1.58
19628852--19628898	2	23.5	2	95	0	85	46	2	0	51	1.13
19642131--19642155	1	25.0	1	100	0	50	100	0	0	0	0.00
19647162--19647196	14	2.5	14	85	0	52	28	2	5	62	1.32
19647197--19647249	10	5.2	11	80	15	51	47	1	0	50	1.12
19647198--19647231	11	3.4	10	88	11	52	38	0	0	61	0.96
19649634--19649765	61	2.1	61	84	1	165	52	12	4	30	1.59
19650168--19650208	15	2.8	15	82	10	50	65	9	0	24	1.22
19659182--19659217	2	18.0	2	100	0	72	50	0	0	50	1.00
19661242--19661289	21	2.3	21	77	0	51	52	10	0	37	1.36
19661399--19661445	22	2.1	22	84	4	58	53	6	2	38	1.39
19671912--19671979	13	5.5	13	69	22	56	57	13	5	23	1.58
19671915--19672008	24	3.9	23	73	13	82	57	11	5	25	1.55
19672095--19672144	12	4.2	12	80	12	50	82	6	4	8	0.96
19672541--19672581	20	2.1	20	86	4	57	56	9	0	34	1.32
19673350--19673408	20	3.0	20	97	0	109	25	8	18	47	1.77
19678477--19678539	22	2.8	23	69	16	60	63	6	4	25	1.38
19679251--19679373	24	5.1	24	80	10	135	58	8	4	27	1.49
19679440--19679481	17	2.4	19	80	15	54	78	4	2	14	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19679440--19679580	7	20.1	7	84	5	99	73	8	2	14	1.18
19679477--19679580	14	7.4	14	87	6	131	73	9	2	14	1.21
19679477--19679580	21	5.0	21	86	5	131	73	9	2	14	1.21
19680726--19680750	12	2.1	12	100	0	50	40	0	0	60	0.97
19682889--19683615	233	3.1	230	78	7	650	50	7	10	32	1.64
19684519--19684936	234	1.8	230	81	7	522	52	6	10	30	1.62
19690735--19690814	38	2.1	38	86	4	108	27	20	6	46	1.74
19691958--19691997	2	20.0	2	100	0	80	0	50	0	50	1.00
19700377--19700427	2	25.5	2	100	0	102	0	50	0	49	1.00
19708380--19708422	6	7.2	6	83	0	59	53	11	32	2	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133