genome.fa.s645.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  47  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10056558--10056611	25	2.2	25	83	6	67	35	7	1	55	1.39
10058968--10059007	3	13.3	3	100	0	80	35	0	0	65	0.93
10059249--10059346	40	2.5	41	73	15	98	41	6	7	44	1.56
10059433--10059472	16	2.4	18	76	23	52	52	0	2	45	1.14
10059964--10060008	21	2.2	21	92	4	74	24	4	0	71	1.05
10062919--10062956	18	2.1	18	85	9	51	81	0	13	5	0.85
10062925--10062978	28	2.0	27	85	10	74	79	0	18	1	0.82
10062926--10062978	14	4.0	13	76	11	54	79	0	18	1	0.83
10062928--10062978	10	5.0	10	78	7	50	78	0	19	1	0.85
10064415--10064482	23	3.0	23	78	8	68	33	2	14	48	1.59
10064397--10064481	22	3.8	22	76	3	71	32	2	14	50	1.55
10064397--10064482	45	1.9	45	80	4	102	33	2	13	50	1.55
10064803--10064836	17	1.9	17	88	5	50	29	11	17	41	1.85
10064830--10064868	16	2.4	16	91	0	60	35	12	7	43	1.72
10064878--10064980	33	3.1	34	79	5	86	37	15	8	37	1.79
10064940--10065009	16	4.3	16	85	1	86	30	17	14	38	1.89
10064929--10065009	32	2.5	33	87	2	110	32	17	12	38	1.87
10066534--10066573	12	3.3	12	85	0	53	10	5	10	75	1.19
10066521--10066561	18	2.2	18	86	4	55	9	9	4	75	1.17
10066533--10066604	25	2.9	25	78	10	69	15	4	5	75	1.15
10066612--10066650	3	13.0	3	100	0	78	33	0	0	66	0.92
10066730--10066851	21	6.3	19	75	18	92	29	4	10	55	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10071562--10071623	3	20.7	3	100	0	124	32	0	0	67	0.91
10076305--10076530	117	1.9	117	96	0	416	32	18	11	37	1.86
10096918--10096991	36	2.1	36	100	0	148	13	18	13	54	1.71
10107504--10107535	16	2.0	16	93	0	55	34	0	21	43	1.53
10110122--10110448	105	3.1	104	80	2	377	21	22	9	46	1.80
10110111--10110971	105	8.2	104	70	13	372	22	20	9	46	1.80
10110075--10110722	70	9.3	70	73	9	342	22	21	9	46	1.79
10110087--10110624	35	15.4	35	74	9	253	22	21	9	47	1.78
10110407--10110722	139	2.3	140	80	5	329	22	20	9	48	1.78
10110121--10110840	35	20.6	35	73	5	177	22	21	9	47	1.78
10110076--10110909	70	11.9	70	72	8	311	22	20	9	47	1.79
10110855--10110988	35	3.8	35	73	9	121	21	20	11	46	1.82
10114055--10114098	20	2.1	21	84	12	56	34	2	6	56	1.38
10113886--10114296	199	2.1	199	95	0	741	26	12	17	44	1.84
10116952--10116987	17	2.2	17	90	5	56	36	0	13	50	1.43
10117358--10117455	44	2.3	42	83	10	126	58	7	1	33	1.32
10119311--10119354	20	2.0	21	83	12	54	72	6	9	11	1.27
10121383--10121412	12	2.5	12	94	0	51	36	10	20	33	1.86
10121592--10121731	60	2.3	60	80	4	147	41	12	5	41	1.64
10122234--10122276	21	2.0	21	100	0	86	32	18	13	34	1.90
10123660--10123725	26	2.6	27	79	18	86	46	1	4	46	1.32
10123715--10123770	17	3.1	17	74	20	51	57	1	0	41	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10123704--10123791	19	4.9	18	75	19	69	52	1	1	45	1.15
10123836--10124051	3	73.3	3	69	20	55	40	0	1	56	1.13
10123819--10123982	59	2.8	55	82	13	179	41	0	0	57	1.08
10123818--10124051	23	11.1	22	72	22	136	41	0	1	56	1.12
10124688--10124721	16	2.1	16	88	0	50	44	0	2	52	1.16
10124472--10124905	222	1.9	223	88	0	654	40	7	7	45	1.60
10124908--10125125	72	3.0	72	77	9	221	40	7	6	45	1.59
10147795--10147850	28	2.0	28	96	0	103	26	14	16	42	1.86
10150374--10150423	24	2.1	24	88	0	73	44	10	10	36	1.72
10153926--10153972	21	2.3	20	88	3	67	17	6	2	74	1.12
10154183--10154252	34	2.0	35	86	10	99	81	4	7	7	0.98
10154630--10154682	25	2.1	25	89	6	81	73	1	3	20	1.08
10154645--10154685	18	2.3	18	86	0	55	78	0	4	17	0.93
10161807--10162031	101	2.2	100	81	7	249	46	17	17	18	1.85
10164635--10164732	40	2.5	39	80	11	101	29	2	4	64	1.23
10165381--10165476	20	4.7	19	77	11	93	20	3	2	73	1.07
10165384--10165443	7	8.9	7	84	12	81	23	1	0	75	0.90
10165456--10165629	4	45.0	4	68	19	59	31	2	3	62	1.26
10165528--10165656	22	6.1	21	78	11	120	30	4	2	62	1.28
10166558--10166603	5	8.8	5	90	9	58	17	0	0	82	0.67
10166557--10166603	6	7.7	6	81	13	60	17	0	0	82	0.66
10166622--10166836	58	3.8	58	89	4	314	42	6	13	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10177230--10177287	17	3.4	17	86	13	75	79	0	8	12	0.94
10178235--10178280	22	2.1	22	83	0	56	32	26	8	32	1.87
10178291--10178488	42	4.6	41	86	8	154	23	14	19	42	1.88
10178288--10178632	43	8.0	43	83	6	396	23	12	20	43	1.86
10178288--10178632	88	4.0	85	81	8	401	23	12	20	43	1.86
10178802--10178879	23	3.5	23	81	13	83	23	2	2	71	1.10
10178800--10179059	7	35.9	7	68	22	66	28	3	2	65	1.21
10178863--10179083	4	56.2	4	66	17	63	29	3	3	63	1.25
10178800--10179067	24	11.9	23	68	20	97	28	2	2	65	1.22
10178927--10179029	45	2.3	43	83	8	118	33	3	1	60	1.26
10178951--10179028	35	2.2	35	88	8	115	34	2	1	61	1.18
10178981--10179097	20	5.6	20	75	10	92	28	4	1	65	1.21
10179028--10179114	40	2.1	42	85	8	117	21	4	4	68	1.26
10179943--10180053	10	11.2	10	71	21	58	25	1	3	69	1.14
10179955--10179992	19	2.0	19	85	10	51	31	0	5	63	1.17
10180007--10180054	6	8.5	6	82	13	66	16	2	0	81	0.79
10180007--10180048	16	2.6	16	92	3	66	16	2	0	80	0.81
10180009--10180054	22	2.1	21	92	4	74	17	2	0	80	0.81
10180071--10180229	58	2.7	59	87	6	218	46	6	10	37	1.63
10182598--10183078	94	5.3	91	73	16	295	51	4	3	41	1.37
10182654--10183041	188	2.1	185	79	8	401	50	4	3	42	1.40
10183407--10183495	30	2.9	31	78	8	85	52	1	3	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10189040--10189088	23	2.1	23	100	0	98	20	20	14	44	1.86
10191284--10191391	53	2.0	53	100	0	216	31	25	11	31	1.91
10195099--10195149	23	2.2	23	100	0	102	43	13	15	27	1.85
10201938--10201980	22	2.0	22	90	0	68	44	11	11	32	1.77
10201950--10201999	20	2.3	21	83	10	57	52	8	8	32	1.60
10201939--10201999	22	2.9	21	82	7	61	47	8	9	34	1.66
10208419--10208465	20	2.3	20	92	3	76	27	8	27	36	1.86
10212223--10212257	16	2.2	16	94	0	61	42	11	11	34	1.77
10219514--10219549	17	2.1	17	89	5	54	80	0	11	8	0.90
10221123--10221183	4	14.8	4	76	10	52	27	0	1	70	0.97
10221133--10221189	29	2.0	29	85	0	78	33	0	1	64	1.04
10221824--10221856	17	1.9	17	88	11	50	69	3	15	12	1.30
10223183--10223255	29	2.5	29	78	12	87	56	5	1	36	1.31
10224819--10224845	2	13.5	2	100	0	54	51	0	0	48	1.00
10226935--10226966	2	16.0	2	100	0	64	50	0	0	50	1.00
10227639--10227670	2	16.0	2	93	0	55	53	0	0	46	1.00
10230300--10230339	19	2.1	19	95	0	71	25	10	12	52	1.70
10231037--10231066	2	15.0	2	100	0	60	50	0	0	50	1.00
10237302--10237357	27	2.1	27	86	0	76	37	8	8	44	1.67
10239491--10239533	20	2.1	20	86	4	59	46	0	4	48	1.22
10244205--10244231	13	2.1	13	100	0	54	55	14	0	29	1.40
10247152--10247227	33	2.3	33	84	6	100	30	18	10	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10248990--10249051	3	21.7	3	90	9	103	64	0	0	35	0.94
10250226--10250290	33	1.9	34	87	3	96	29	10	13	46	1.77
10251974--10252015	19	2.3	18	84	12	50	71	4	11	11	1.29
10256279--10256329	13	3.8	13	82	7	57	23	0	1	74	0.92
10256272--10256323	6	8.8	6	83	6	54	23	0	1	75	0.91
10256272--10256452	4	45.5	4	67	21	64	25	2	3	67	1.19
10256272--10256447	18	9.3	18	70	18	92	25	2	3	68	1.19
10256366--10256459	32	3.1	31	80	11	106	30	3	2	63	1.21
10256427--10256469	22	2.0	22	90	0	68	30	4	2	62	1.28
10256344--10256458	28	4.1	27	73	17	92	29	2	3	64	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133