genome.fa.s645.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  96  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18685949--18685982	18	1.9	17	88	5	50	32	0	0	67	0.91
18697061--18697108	2	24.0	2	95	0	78	50	4	0	45	1.21
18700773--18700812	18	2.2	18	86	0	53	30	0	2	67	1.04
18700851--18700887	13	2.9	13	85	14	51	72	0	0	27	0.84
18702979--18703158	28	6.4	27	69	11	94	43	18	12	25	1.85
18703184--18703365	50	3.7	49	83	4	204	41	20	9	28	1.83
18703239--18703528	101	2.9	101	80	4	300	41	18	10	29	1.83
18704447--18704496	25	2.0	25	100	0	100	32	20	16	32	1.94
18706649--18706682	17	2.0	17	94	0	59	26	5	5	61	1.42
18707869--18707914	15	3.1	15	83	0	56	43	0	0	56	0.99
18707895--18707927	17	1.9	17	93	0	57	48	3	0	48	1.17
18707504--18709157	829	2.0	825	87	2	2403	40	7	8	42	1.64
18708719--18708764	15	3.1	15	77	20	51	52	0	0	47	1.00
18708723--18708754	17	1.9	17	93	6	57	50	0	0	50	1.00
18708720--18708762	16	2.6	17	85	3	61	48	0	0	51	1.00
18710420--18710474	24	2.4	23	74	14	60	36	0	3	60	1.15
18711109--18711202	22	4.3	22	79	4	75	45	5	8	40	1.57
18711324--18711394	22	3.2	22	71	0	52	49	8	7	35	1.60
18711463--18711744	22	13.0	21	72	10	113	48	4	8	38	1.53
18711764--18711983	22	10.2	22	68	11	71	47	10	7	35	1.65
18712296--18712351	11	5.1	11	80	0	67	53	0	5	41	1.24
18712268--18712476	22	9.1	22	71	9	105	49	6	8	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18712452--18712488	18	2.0	19	89	5	58	51	8	5	35	1.55
18712524--18712629	22	4.9	22	78	11	94	50	8	3	36	1.51
18712578--18712706	22	5.9	22	74	0	78	44	8	6	40	1.62
18712691--18712762	22	3.3	21	73	7	54	51	9	1	37	1.44
18713045--18713086	22	1.9	22	85	0	57	50	14	9	26	1.73
18713045--18713203	21	7.5	21	69	6	88	48	12	8	30	1.70
18713184--18713235	26	2.0	26	84	0	68	51	9	7	30	1.62
18713328--18713356	3	9.7	3	100	0	58	34	0	0	65	0.93
18713591--18713615	2	12.5	2	100	0	50	0	48	0	52	1.00
18714944--18714992	26	1.9	25	83	4	62	57	10	4	28	1.50
18714975--18715010	18	2.1	18	89	5	56	58	5	2	33	1.36
18717308--18717352	21	2.1	21	84	8	56	42	4	2	51	1.34
18727436--18727479	9	4.8	9	80	5	52	70	0	2	27	0.99
18727649--18727685	13	2.8	13	87	0	56	43	21	10	24	1.84
18731240--18731290	13	3.9	12	80	19	50	27	7	1	62	1.33
18731511--18731550	3	13.3	3	100	0	80	32	0	0	67	0.91
18731623--18731655	16	2.1	16	88	5	50	66	6	3	24	1.28
18734912--18734974	11	5.9	11	72	18	53	9	0	12	77	0.98
18734924--18734964	6	6.3	7	81	13	52	9	0	12	78	0.98
18734906--18734982	18	4.4	18	82	9	97	7	0	10	81	0.86
18734905--18734971	26	2.5	28	85	9	95	10	0	10	79	0.95
18734909--18734986	7	11.0	7	69	13	52	7	0	11	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18734906--18734984	35	2.3	35	85	12	117	7	0	10	82	0.85
18735415--18735505	44	2.0	44	85	6	121	20	15	29	34	1.94
18735499--18735696	69	2.9	69	79	8	190	27	20	21	30	1.98
18735440--18735799	23	15.8	22	71	10	172	28	18	22	30	1.98
18735452--18735733	92	3.1	91	78	8	286	28	18	22	30	1.98
18736207--18736244	17	2.2	17	100	0	76	13	21	13	52	1.73
18736326--18736385	26	2.3	26	81	16	79	31	13	16	38	1.87
18737585--18737856	135	2.0	135	81	7	316	18	22	8	50	1.73
18741505--18741569	17	3.8	16	76	10	58	7	16	0	75	1.03
18744613--18744669	13	4.5	11	80	20	51	28	7	0	64	1.19
18744619--18744669	26	1.9	27	88	11	79	29	7	0	62	1.23
18744619--18744669	13	3.8	14	82	15	63	29	7	0	62	1.23
18748315--18748560	132	1.9	133	89	0	386	37	14	17	30	1.89
18753274--18753299	12	2.2	12	100	0	52	92	7	0	0	0.39
18753784--18753832	22	2.3	21	89	3	71	79	2	16	2	0.92
18753788--18753837	21	2.6	18	77	20	55	80	2	16	2	0.91
18756236--18756284	10	3.8	13	70	24	50	75	4	0	20	0.96
18758736--18758790	10	5.9	10	73	16	55	49	1	0	49	1.11
18760607--18760764	81	2.0	81	96	0	289	24	28	8	38	1.84
18772448--18772644	52	3.8	52	87	5	256	27	20	8	43	1.80
18772670--18772711	11	3.8	11	83	0	57	50	28	0	21	1.49
18776449--18776500	18	2.8	18	76	2	50	17	0	30	51	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18776508--18776556	21	2.3	21	85	0	62	8	2	42	46	1.45
18776568--18776626	25	2.3	26	85	5	77	15	0	37	47	1.45
18776614--18776651	17	2.3	17	82	17	53	15	7	34	42	1.76
18776772--18776883	39	2.9	38	81	9	136	15	0	35	49	1.45
18776777--18776886	58	1.9	56	83	10	141	17	0	35	47	1.48
18777604--18777773	3	59.3	3	76	15	119	37	2	2	57	1.29
18777614--18777681	29	2.2	32	84	7	88	35	1	7	55	1.37
18777604--18777773	18	10.1	17	76	8	136	37	2	2	57	1.29
18778596--18778635	13	3.2	13	85	3	55	15	2	7	75	1.14
18778603--18778635	13	2.7	12	90	9	57	15	0	9	75	1.03
18778596--18778660	26	2.5	26	76	14	64	12	4	6	76	1.12
18779635--18779677	19	2.3	19	95	0	77	16	23	4	55	1.59
18782789--18782889	23	4.5	21	71	20	71	80	1	12	4	0.96
18782802--18782887	27	3.3	25	73	21	70	82	1	11	4	0.87
18782945--18783057	56	2.0	56	100	0	226	37	10	21	30	1.87
18782962--18783088	56	2.3	55	83	5	139	40	8	18	32	1.82
18783866--18784686	120	6.8	121	73	9	436	20	25	13	40	1.88
18784864--18784915	24	2.1	23	82	10	59	36	5	7	50	1.55
18784997--18785043	3	15.7	3	95	0	85	34	2	0	63	1.06
18785869--18785924	13	4.3	13	80	13	53	19	3	5	71	1.21
18786022--18786063	6	7.0	6	78	10	50	76	0	0	23	0.79
18789461--18789488	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18790546--18790586	20	2.0	22	90	9	68	46	0	7	46	1.30
18790548--18790592	19	2.2	22	84	11	60	46	0	8	44	1.34
18791285--18791331	13	3.7	13	75	13	53	82	10	2	4	0.88
18791285--18791342	21	2.6	23	79	15	68	82	10	1	5	0.89
18791282--18791341	24	2.5	24	79	17	70	81	10	1	6	0.93
18802963--18803021	11	5.0	11	81	10	64	81	0	15	3	0.82
18802957--18803002	24	2.0	23	91	4	74	78	0	17	4	0.91
18802935--18803021	11	7.5	11	73	18	52	77	1	18	3	0.98
18802963--18803025	31	1.9	35	84	12	89	80	0	15	3	0.83
18805410--18805492	32	2.5	32	82	7	87	74	2	1	21	1.00
18805410--18805492	39	2.1	40	84	6	107	74	2	1	21	1.00
18805427--18805459	7	4.7	7	92	7	50	75	3	0	21	0.93
18805406--18805492	25	3.6	24	74	13	79	74	2	1	21	0.99
18807124--18807324	109	1.8	109	96	0	375	26	6	12	53	1.63
18808134--18808159	2	13.0	2	100	0	52	50	0	0	50	1.00
18808647--18808699	7	7.7	7	79	12	65	45	1	0	52	1.11
18809487--18809512	10	2.6	10	100	0	52	38	7	0	53	1.30
18810984--18811030	24	2.0	24	82	0	58	59	6	4	29	1.41
18821479--18821614	52	2.6	52	81	6	159	28	20	7	43	1.79
18821649--18821690	11	3.8	11	90	0	66	50	26	0	23	1.50
18821649--18821691	22	2.0	22	95	0	77	48	25	0	25	1.51
18822532--18822661	52	2.5	52	86	8	201	25	16	8	49	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18822686--18822727	11	3.8	11	80	0	57	50	28	0	21	1.49
18822686--18822728	22	2.0	22	90	0	68	48	27	0	23	1.51
18825482--18825539	18	3.2	18	78	4	55	17	0	31	51	1.45
18825589--18825659	25	2.5	30	69	21	71	19	0	32	47	1.50
18825819--18825907	38	2.4	38	79	7	92	14	0	35	49	1.44
18826644--18826825	3	63.3	3	77	14	134	36	3	2	57	1.30
18827653--18827700	12	3.9	12	81	10	53	14	2	4	79	0.98
18828678--18828720	19	2.3	19	91	0	68	18	23	2	55	1.54
18831858--18831934	23	3.4	21	72	21	57	81	1	11	5	0.90
18831861--18831914	27	2.0	28	85	3	74	85	1	7	5	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133