genome.fa.s645.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  58  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12041229--12041549	121	2.6	117	79	11	319	51	9	4	33	1.55
12044278--12044325	13	3.4	13	74	20	51	64	10	0	25	1.25
12045449--12045803	44	8.1	43	74	9	261	45	14	10	29	1.78
12045457--12045584	43	3.0	43	82	2	139	47	15	7	28	1.73
12045519--12045803	87	3.3	87	74	12	253	45	14	10	29	1.77
12045686--12045797	46	2.5	45	83	2	136	46	13	11	28	1.78
12046371--12046426	23	2.5	22	80	5	67	28	19	25	26	1.99
12049536--12049585	17	3.0	16	80	8	55	6	18	0	76	0.99
12049539--12049610	27	2.5	27	82	13	74	5	19	1	73	1.10
12052356--12052399	21	2.1	21	100	0	88	22	18	13	45	1.84
12066269--12066502	74	3.1	75	74	8	213	44	14	13	27	1.82
12067051--12067139	22	4.1	22	78	8	92	31	28	16	23	1.96
12067051--12067139	43	2.0	44	89	2	135	31	28	16	23	1.96
12067248--12067290	22	2.0	22	90	0	68	16	16	23	44	1.86
12067374--12067686	50	6.3	49	80	5	333	33	15	15	35	1.89
12067374--12067702	99	3.3	97	82	4	372	34	14	15	35	1.89
12068023--12068050	5	5.6	5	100	0	56	64	17	0	17	1.30
12068075--12068109	16	2.1	16	94	5	61	85	2	11	0	0.69
12069938--12069987	3	16.7	3	100	0	100	68	0	0	32	0.90
12071391--12071456	19	3.8	19	77	22	90	51	4	0	43	1.22
12071401--12071429	13	2.2	13	100	0	58	58	6	0	34	1.25
12071716--12071838	62	2.0	61	83	1	156	27	13	12	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12071838--12071894	20	2.8	20	72	2	51	47	38	0	14	1.44
12071904--12071950	13	3.6	13	77	11	51	53	31	0	14	1.42
12073343--12073621	49	5.7	49	81	0	270	28	12	12	46	1.78
12073343--12073620	98	2.8	97	78	2	304	28	12	12	46	1.78
12073343--12073621	147	1.9	148	82	2	355	28	12	12	46	1.78
12073535--12073699	83	2.0	83	83	2	206	28	14	10	46	1.78
12073486--12073742	132	1.9	132	85	3	356	29	15	10	45	1.78
12073618--12073920	49	6.2	48	77	9	242	28	13	11	46	1.78
12073648--12073887	97	2.5	98	82	10	278	29	12	10	47	1.76
12073648--12073920	97	2.8	94	78	14	261	28	12	12	46	1.77
12073938--12074050	49	2.3	50	83	10	144	34	10	10	44	1.74
12074342--12074380	20	2.0	20	94	0	69	51	12	10	25	1.71
12076503--12076630	33	3.9	32	74	10	98	44	35	3	15	1.65
12076502--12076666	7	24.9	7	67	17	75	45	35	3	15	1.62
12076502--12076683	13	13.8	13	70	12	104	45	35	3	15	1.63
12076502--12076683	20	9.1	20	67	15	92	45	35	3	15	1.63
12076568--12076683	27	4.3	27	76	8	94	47	34	2	15	1.59
12076671--12076735	26	2.5	26	73	14	62	46	30	6	16	1.72
12080099--12080346	7	37.3	7	67	16	98	45	31	1	20	1.61
12080099--12080220	27	4.6	26	75	15	108	45	34	0	19	1.57
12080133--12080235	26	4.0	26	79	14	97	44	33	0	20	1.58
12080103--12080287	20	9.3	19	72	12	115	45	30	1	22	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12080292--12080363	26	2.8	26	77	6	74	45	33	4	16	1.67
12083188--12083246	18	3.3	18	68	17	52	76	0	11	11	1.03
12083532--12083573	13	3.1	13	81	18	50	80	2	11	4	0.95
12083532--12083571	14	2.9	14	85	10	55	82	2	10	5	0.91
12084725--12085042	42	7.7	40	72	13	175	33	14	17	35	1.90
12084803--12084882	41	1.9	42	87	7	119	32	16	17	33	1.92
12084725--12084913	84	2.3	83	80	7	206	34	14	17	33	1.91
12084986--12085062	40	1.9	40	86	2	109	32	16	15	35	1.91
12085305--12085338	18	1.9	18	88	5	52	23	0	14	61	1.33
12085821--12085873	4	13.5	4	84	4	72	24	3	0	71	1.02
12085821--12085868	19	2.5	19	90	10	71	25	4	0	70	1.04
12085924--12085960	19	1.9	19	88	0	56	48	0	16	35	1.46
12089906--12089964	29	2.0	29	81	12	68	47	6	3	42	1.46
12090524--12090561	15	2.7	14	84	8	51	13	5	2	78	1.02
12091438--12091487	21	2.5	21	83	6	68	42	0	0	58	0.98
12094449--12094486	19	2.0	19	85	10	51	34	15	18	31	1.92
12094562--12094795	120	2.0	120	85	1	317	30	11	17	39	1.86
12100904--12101010	54	2.0	54	94	0	187	26	32	6	34	1.82
12103245--12103556	169	1.8	170	80	6	382	37	13	10	38	1.80
12104856--12105100	80	3.1	80	86	2	330	22	8	26	42	1.82
12109856--12109889	17	1.9	18	94	5	61	50	0	0	50	1.00
12110305--12110352	22	2.3	20	83	16	55	41	6	2	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12113069--12113102	9	3.9	9	96	3	61	20	23	0	55	1.43
12118294--12118352	26	2.3	26	96	0	109	32	16	15	35	1.90
12118294--12118359	26	2.5	26	92	0	96	31	15	16	36	1.90
12134469--12134642	88	2.0	86	84	6	226	38	3	6	51	1.46
12135128--12135173	19	2.5	19	86	6	60	50	0	0	50	1.00
12139614--12139659	22	2.1	22	95	0	83	39	17	15	28	1.90
12141837--12141869	15	2.3	15	89	5	50	12	15	0	72	1.12
12146503--12146565	30	2.1	30	85	8	85	36	4	4	53	1.43
12147117--12147176	27	2.4	24	79	15	75	46	13	5	35	1.65
12152552--12152631	34	2.4	34	95	0	142	32	27	13	26	1.94
12154073--12154168	31	3.3	31	66	18	87	37	10	15	36	1.82
12154063--12154178	57	2.0	57	95	3	207	42	10	12	34	1.78
12155114--12155210	50	1.9	50	81	8	117	39	9	8	43	1.67
12155727--12155806	36	2.3	36	83	14	105	48	1	1	48	1.17
12155741--12155817	19	4.2	18	75	12	61	54	1	1	42	1.16
12155857--12155898	20	2.1	20	82	8	50	47	2	2	47	1.28
12155936--12155985	22	2.3	22	79	6	57	42	4	4	50	1.40
12156162--12156227	28	2.3	29	87	5	91	53	1	0	45	1.09
12156320--12156356	20	1.9	18	89	10	56	48	2	0	48	1.15
12156462--12156504	13	3.4	13	80	6	52	58	0	0	41	0.98
12156835--12156879	22	2.0	22	100	0	90	28	22	22	26	1.99
12162622--12162665	21	2.1	21	100	0	88	38	27	20	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12166871--12167098	123	1.9	123	94	0	402	37	12	14	35	1.84
12169506--12169651	51	2.8	51	86	4	186	40	6	24	28	1.81
12170188--12170313	25	5.1	25	74	11	89	37	6	34	21	1.79
12170228--12170283	24	2.3	24	87	3	76	35	8	35	19	1.83
12170552--12170593	11	3.8	11	90	0	66	23	0	26	50	1.50
12170551--12170593	22	2.0	22	95	0	77	25	0	25	48	1.51
12170619--12170747	52	2.5	52	82	2	152	44	9	19	27	1.81
12170619--12170763	52	2.8	50	79	8	146	43	8	20	28	1.80
12176330--12176380	23	2.2	22	82	6	66	9	9	1	78	1.04
12176342--12176387	21	2.2	22	84	7	60	8	8	0	82	0.84
12176340--12176381	21	2.0	22	90	4	68	9	7	0	83	0.81
12185437--12185483	19	2.5	19	76	13	51	48	12	2	36	1.53
12185512--12185542	14	2.2	14	94	0	53	51	0	3	45	1.17
12186096--12186210	32	3.5	33	76	8	112	39	2	9	48	1.50
12190307--12190558	44	5.9	44	76	11	202	41	18	14	26	1.88
12190255--12190575	86	3.8	85	76	10	273	42	17	13	25	1.86
12190503--12190600	41	2.4	41	84	5	117	42	16	14	26	1.86
12191088--12191126	20	2.0	20	89	0	60	30	20	12	35	1.90
12191149--12191309	46	3.4	46	86	3	214	39	13	8	38	1.74
12191198--12191355	71	2.2	71	90	0	253	40	12	7	39	1.72
12191152--12191400	117	2.1	116	89	0	390	39	13	8	38	1.75
12191174--12191402	25	10.0	21	70	14	134	38	13	9	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12191279--12191402	46	2.7	46	86	1	160	40	13	8	37	1.74
12192574--12192598	13	1.9	13	100	0	50	16	8	12	64	1.49
12192611--12192703	13	7.5	13	72	18	58	4	15	0	80	0.86
12192625--12192675	20	2.5	20	84	12	59	3	19	0	76	0.94
12192606--12192714	46	2.4	45	83	10	125	5	15	0	78	0.92
12192647--12192703	17	3.4	16	83	11	69	3	12	0	84	0.75
12193064--12193095	11	2.9	11	95	0	55	6	9	3	81	0.97
12196651--12196694	11	3.8	11	82	11	61	81	2	6	9	0.94
12196760--12196875	60	2.0	57	91	5	187	29	10	9	50	1.68
12196817--12196949	70	1.9	71	88	3	205	32	10	9	48	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133