genome.fa.s645.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  87  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17241108--17241150	10	4.3	10	80	11	52	46	0	0	53	1.00
17241114--17241156	20	2.2	20	91	0	68	48	0	0	51	1.00
17241822--17241873	2	26.0	2	92	0	77	48	0	3	48	1.20
17242149--17242222	13	6.0	13	68	16	50	41	1	0	56	1.07
17263840--17263905	17	4.0	16	74	14	53	54	4	9	31	1.52
17266858--17266910	16	3.1	17	75	10	54	37	11	15	35	1.83
17266935--17266978	21	2.1	21	82	0	52	6	15	2	75	1.12
17269949--17270051	7	14.4	7	70	13	68	17	1	38	41	1.61
17269983--17270096	20	5.8	20	72	10	83	19	1	35	43	1.61
17270102--17270134	16	2.1	16	94	0	57	15	0	39	45	1.46
17276742--17276780	8	5.1	8	81	12	55	61	2	0	35	1.10
17276738--17276781	22	2.0	22	100	0	88	59	4	0	36	1.18
17276797--17276828	16	2.0	16	93	0	55	71	0	0	28	0.86
17278388--17278429	21	2.0	21	100	0	84	19	14	28	38	1.90
17282747--17282797	25	2.0	25	100	0	102	31	19	7	41	1.80
17285170--17285576	144	2.8	141	78	6	394	31	13	12	42	1.81
17287781--17287853	3	24.3	3	97	0	137	65	0	1	32	1.01
17293386--17293426	21	2.0	21	90	0	64	24	9	26	39	1.86
17304826--17304861	10	3.6	10	84	0	54	33	16	11	38	1.84
17309560--17309712	39	3.9	39	79	15	183	29	13	16	41	1.86
17309520--17309709	78	2.4	78	90	0	281	28	15	16	39	1.89
17311967--17312001	17	2.1	16	89	5	52	62	11	2	22	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17318744--17318778	17	2.1	16	89	5	52	62	11	2	22	1.41
17319519--17319780	131	2.0	131	99	0	515	39	15	9	35	1.79
17323118--17323151	16	2.1	16	100	0	68	20	5	26	47	1.73
17327130--17327350	117	1.9	117	90	1	354	41	4	12	41	1.63
17328280--17328648	188	1.9	190	86	3	519	31	19	9	39	1.83
17332100--17333042	370	2.5	371	87	1	1295	27	21	29	21	1.98
17335211--17335246	18	2.0	18	89	10	56	63	0	0	36	0.94
17336040--17336088	21	2.3	21	89	6	73	20	2	4	73	1.10
17336061--17336149	31	2.8	31	86	5	126	17	7	2	71	1.20
17336029--17336149	62	2.0	62	82	9	149	19	7	2	71	1.22
17337598--17337649	26	2.0	25	92	3	86	28	11	19	40	1.86
17338465--17338507	20	2.1	20	83	12	52	48	0	20	30	1.50
17341309--17341351	19	2.4	18	81	11	52	30	9	16	44	1.79
17341315--17341351	19	1.9	19	88	0	56	29	10	18	40	1.85
17342635--17342729	45	2.2	44	80	12	108	24	9	14	51	1.72
17343335--17343374	21	1.9	21	89	0	62	35	15	22	27	1.94
17344192--17344240	23	2.1	23	96	0	89	42	24	4	28	1.73
17347872--17348055	102	1.8	101	92	3	316	31	17	16	34	1.93
17351503--17351542	20	2.0	20	85	0	53	37	5	2	55	1.35
17357269--17357358	39	2.3	40	82	3	103	28	8	34	27	1.87
17364068--17364100	10	3.7	9	84	15	50	57	0	0	42	0.98
17365161--17365211	25	2.0	25	96	0	93	29	3	29	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17367683--17367725	19	2.3	19	92	4	70	58	4	2	34	1.32
17367796--17367836	19	2.2	19	86	0	55	70	7	0	21	1.11
17367867--17367935	21	3.2	21	68	11	50	63	4	2	28	1.28
17367926--17367970	22	2.2	21	84	11	58	44	2	2	51	1.26
17368012--17368068	20	2.8	20	86	0	69	24	0	7	68	1.14
17368023--17368096	20	3.8	20	82	8	82	27	1	8	63	1.30
17371920--17371998	40	2.0	40	82	5	97	79	7	3	8	1.03
17372902--17372933	3	10.7	3	100	0	64	68	0	0	31	0.90
17378302--17378331	14	2.1	15	93	6	53	46	6	10	36	1.64
17380635--17380755	30	4.0	30	78	2	109	31	14	23	30	1.94
17382792--17382828	13	2.8	13	83	0	56	78	5	0	16	0.93
17383660--17383725	5	14.0	5	76	22	54	75	3	21	0	0.93
17383666--17383720	28	2.0	28	92	0	92	76	0	23	0	0.79
17383668--17383716	17	2.9	16	82	14	55	75	0	24	0	0.80
17383661--17383728	28	2.4	28	80	2	91	76	2	20	0	0.92
17383728--17383805	3	26.3	3	97	2	149	66	0	0	33	0.92
17384106--17384719	115	5.4	114	77	5	450	43	16	22	18	1.88
17385418--17385532	60	1.9	60	85	0	158	13	19	10	57	1.64
17392546--17392576	16	1.9	16	100	0	62	87	0	12	0	0.55
17396019--17396051	14	2.4	14	85	14	50	12	0	0	87	0.53
17396104--17396141	12	3.1	12	85	7	58	78	5	0	15	0.91
17396569--17396606	19	2.0	19	90	10	60	28	18	5	47	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17396975--17397012	18	2.1	19	95	5	69	81	0	18	0	0.69
17396983--17397018	16	2.2	16	90	0	54	80	0	16	2	0.83
17397017--17397110	3	32.7	3	83	12	126	64	1	1	32	1.07
17397017--17397103	37	2.4	35	83	14	115	64	1	1	33	1.09
17397018--17397109	38	2.3	40	80	14	102	64	1	1	33	1.08
17398505--17398571	34	1.9	35	93	6	118	37	2	25	34	1.71
17398514--17398570	18	3.3	18	75	9	73	40	3	22	33	1.71
17399025--17399143	60	2.0	61	80	6	136	27	10	5	55	1.57
17398999--17399207	111	1.9	114	85	5	300	29	12	6	51	1.65
17400171--17400242	13	5.4	12	73	17	54	1	8	13	76	1.08
17400170--17400221	24	2.3	23	83	9	63	1	7	11	78	1.02
17400429--17400479	17	3.1	15	78	21	50	70	7	1	19	1.21
17401294--17401318	13	1.9	13	100	0	50	12	8	0	80	0.92
17401273--17401335	31	2.0	31	88	11	94	9	17	0	73	1.09
17401688--17401728	10	3.8	11	81	15	50	0	12	2	85	0.70
17401664--17401720	19	3.2	19	73	24	52	1	15	1	80	0.87
17401670--17401717	14	3.3	14	77	16	53	2	14	2	81	0.88
17401664--17401728	30	2.2	30	84	10	82	1	15	3	80	0.92
17407357--17407455	51	1.9	51	87	0	144	26	13	11	49	1.75
17407926--17407958	17	1.9	17	88	11	50	81	3	6	9	0.95
17408711--17408766	22	2.5	22	85	5	67	73	1	8	16	1.17
17408794--17408827	18	1.9	18	88	5	52	73	0	8	17	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17412141--17412191	14	3.6	15	76	12	54	41	33	0	25	1.56
17412313--17412375	18	3.6	18	69	18	60	26	19	9	44	1.81
17414332--17414365	3	11.3	3	93	0	59	35	2	0	61	1.11
17417103--17417258	52	3.0	51	84	6	190	42	7	21	28	1.79
17417790--17417889	25	4.0	25	78	2	112	38	10	34	18	1.84
17423234--17423260	2	13.5	2	100	0	54	48	0	0	51	1.00
17437811--17437869	29	2.1	28	81	9	66	32	0	5	62	1.17
17437911--17437943	14	2.3	15	89	5	50	33	0	0	66	0.92
17441752--17442202	134	3.4	133	85	1	553	27	11	19	40	1.87
17450601--17450930	173	1.9	173	80	6	391	38	12	11	37	1.79
17450514--17451590	485	2.2	482	85	4	1404	38	13	11	37	1.80
17452805--17452858	28	1.9	28	84	0	72	24	7	20	48	1.75
17452757--17452972	80	2.7	79	86	2	315	26	8	24	40	1.83
17456124--17456166	18	2.4	18	96	0	77	25	0	23	51	1.49
17457680--17457717	6	6.7	6	85	11	53	2	10	0	86	0.66
17457679--17457718	16	2.4	16	91	4	62	2	12	0	85	0.71
17457691--17457770	12	6.6	12	71	22	51	13	2	6	77	1.06
17457716--17457766	21	2.4	21	83	9	59	17	0	9	72	1.11
17457783--17457827	3	15.7	3	81	9	58	28	0	4	66	1.11
17458027--17458073	20	2.2	20	85	11	58	72	0	8	19	1.10
17458227--17458264	11	3.5	11	85	0	58	73	0	2	23	0.95
17461415--17461449	18	1.9	18	88	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17462591--17462629	19	1.9	19	85	10	51	76	10	0	12	1.01
17475014--17475227	62	3.5	58	76	10	203	40	15	11	31	1.84
17475015--17475227	63	3.4	62	77	8	211	40	15	11	31	1.84
17475249--17475320	35	2.1	35	86	5	101	34	12	18	34	1.88
17478944--17479095	63	2.4	61	80	8	155	39	16	7	36	1.78
17479054--17479232	63	2.8	63	74	12	177	43	8	9	38	1.67
17479323--17479503	62	3.0	61	80	8	172	38	8	9	43	1.69
17485903--17486609	161	4.4	160	74	9	430	33	10	15	40	1.82
17488268--17488295	14	2.0	14	100	0	56	35	7	14	42	1.73
17490278--17490349	29	2.5	29	78	13	76	43	2	5	48	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133