genome.fa.s645.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  62  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12656852--12656908	19	3.0	19	97	0	105	36	14	5	43	1.67
12657345--12657386	19	2.3	18	87	4	57	73	2	2	21	1.06
12658862--12659160	55	5.4	55	73	6	185	39	13	25	22	1.90
12659023--12659399	55	6.8	55	76	6	269	41	14	24	19	1.89
12659038--12659438	111	3.6	109	76	4	360	40	15	23	19	1.90
12659523--12659712	55	3.5	54	75	9	163	41	11	24	22	1.86
12659514--12659713	110	1.8	110	84	4	278	42	11	24	22	1.86
12659907--12659955	18	3.0	16	82	8	55	30	22	12	34	1.91
12659923--12659959	18	2.1	18	94	0	65	32	16	10	40	1.83
12660777--12660806	14	2.1	14	93	0	51	60	0	16	23	1.36
12661548--12661605	26	2.3	26	82	14	68	18	17	17	46	1.84
12665315--12665350	18	2.0	18	88	0	54	27	5	22	44	1.75
12667763--12667866	52	2.0	52	88	0	154	43	9	21	25	1.83
12667987--12668099	53	2.2	52	83	3	138	31	8	31	27	1.87
12669889--12669930	19	2.2	19	87	12	59	19	0	2	78	0.86
12671615--12671652	3	12.7	3	100	0	76	68	0	0	31	0.90
12671648--12671673	4	6.5	4	100	0	52	76	0	0	23	0.78
12676164--12676193	14	2.1	15	93	6	53	63	0	0	36	0.95
12676516--12676741	123	1.8	124	82	8	291	44	3	3	47	1.40
12676659--12676854	99	2.0	101	89	7	303	47	5	1	45	1.34
12676754--12676981	126	1.8	126	87	4	343	44	5	4	46	1.46
12678514--12678719	56	3.7	53	74	11	153	26	9	24	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12678953--12679145	78	2.5	78	84	1	244	21	11	23	43	1.85
12680761--12680928	43	4.0	43	80	12	197	44	16	12	26	1.84
12680767--12680927	81	2.0	81	89	4	245	43	16	13	26	1.85
12681868--12681903	18	1.9	19	88	5	56	27	25	2	44	1.68
12691784--12691818	16	2.2	16	90	5	54	71	2	2	22	1.13
12695996--12696163	7	24.9	7	68	18	72	17	1	35	45	1.59
12696074--12696222	14	11.9	13	71	17	86	18	1	36	44	1.58
12696127--12696162	12	3.1	12	92	4	56	22	0	30	47	1.52
12696036--12696163	57	2.4	54	83	12	149	17	2	35	44	1.61
12696138--12696198	18	3.3	18	81	2	68	16	1	37	44	1.58
12696224--12696323	19	5.4	19	69	16	59	16	5	37	42	1.70
12696371--12696504	45	2.8	48	76	16	136	45	8	17	28	1.78
12700124--12700148	12	2.1	12	100	0	50	48	12	16	24	1.79
12700119--12701073	411	2.3	409	98	0	1847	33	15	16	34	1.91
12704729--12704787	23	2.8	21	85	10	68	61	6	10	22	1.51
12708438--12708494	30	1.9	30	85	7	80	24	12	14	49	1.77
12708686--12708837	49	3.1	49	77	7	157	37	10	14	37	1.81
12709396--12709443	20	2.4	21	83	16	66	16	27	0	56	1.41
12709616--12709976	31	11.7	31	69	8	155	22	19	19	38	1.93
12709680--12709886	93	2.2	93	81	3	247	23	19	18	38	1.93
12712270--12712317	25	2.0	25	84	12	64	8	16	0	75	1.04
12713151--12713201	19	2.7	19	87	0	66	15	0	39	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12713197--12713258	19	3.3	19	80	8	72	17	3	32	46	1.64
12713814--12713845	12	2.7	12	95	0	55	0	18	0	81	0.70
12716384--12716415	16	2.0	17	88	11	50	40	0	3	56	1.15
12720879--12720906	13	2.2	13	100	0	56	28	14	7	50	1.69
12722584--12722686	34	3.0	34	76	5	100	31	16	13	38	1.87
12732299--12732345	20	2.3	20	88	3	67	17	0	19	63	1.30
12732307--12732346	20	2.0	20	95	0	71	17	0	20	62	1.33
12736601--12736636	9	3.9	9	85	7	54	55	5	0	38	1.23
12736592--12736658	19	3.5	18	86	11	82	52	7	0	40	1.30
12736590--12736668	20	4.0	21	88	9	105	51	8	0	39	1.33
12736630--12736674	20	2.2	20	96	0	81	57	11	0	31	1.33
12736767--12736806	19	2.1	19	85	4	53	50	5	2	42	1.37
12736838--12736898	9	6.4	10	81	11	58	57	11	0	31	1.34
12736840--12736901	18	3.4	18	82	8	81	53	11	0	35	1.37
12736998--12737033	17	2.1	17	89	0	54	58	5	0	36	1.22
12737037--12737298	10	26.6	10	71	13	120	33	3	4	58	1.35
12737023--12737103	20	4.2	20	82	3	85	32	3	4	59	1.36
12737029--12737092	30	2.1	31	88	2	94	28	1	6	64	1.27
12737230--12737271	11	3.9	11	81	6	59	42	0	4	52	1.22
12737221--12737304	21	4.2	20	77	6	89	40	1	5	52	1.34
12737366--12737408	20	2.0	22	78	13	54	44	4	4	46	1.45
12741588--12741624	13	2.8	13	87	0	56	24	10	8	56	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12742875--12742936	18	3.4	18	100	0	124	33	16	20	29	1.94
12743123--12744083	321	3.0	318	78	7	953	32	9	15	42	1.79
12743123--12744041	482	1.9	481	84	3	1233	31	9	15	43	1.79
12743122--12744083	161	6.0	161	78	6	849	32	9	15	42	1.79
12746108--12746151	16	2.7	16	85	3	52	18	4	6	70	1.27
12746118--12746161	8	5.4	8	81	5	52	15	2	9	72	1.19
12750570--12751124	144	3.9	143	76	8	489	40	12	12	34	1.80
12750873--12751154	144	2.0	144	81	2	332	41	13	11	33	1.81
12760225--12760266	17	2.5	17	84	0	57	23	7	4	64	1.38
12770805--12770974	26	6.5	25	77	9	112	24	7	18	49	1.72
12770819--12770973	14	11.7	14	72	18	91	25	7	18	48	1.75
12770819--12770973	65	2.4	65	82	7	199	25	7	18	48	1.75
12770818--12770921	40	2.6	41	80	13	101	27	8	16	47	1.76
12770872--12771027	79	2.0	80	87	3	226	23	7	19	49	1.74
12770858--12771027	26	6.5	25	73	12	110	23	7	20	48	1.74
12770926--12771026	54	1.9	51	84	6	130	17	5	23	52	1.67
12771527--12771567	3	13.7	3	100	0	82	65	0	0	34	0.93
12772298--12772366	35	2.0	35	85	0	93	50	15	15	17	1.78
12772620--12772656	19	2.0	19	89	5	58	67	5	5	21	1.31
12773234--12773290	26	2.1	27	84	9	73	10	8	3	77	1.11
12773250--12773305	22	2.4	25	82	11	73	10	8	1	78	1.03
12773445--12773513	21	3.4	19	82	8	75	36	7	7	49	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12773453--12773518	21	3.1	21	82	8	82	36	6	7	50	1.56
12773593--12773841	101	2.5	101	84	2	304	41	9	11	37	1.73
12773589--12773883	101	2.9	100	76	8	285	41	9	11	37	1.74
12774400--12774591	106	1.8	106	82	6	246	53	9	17	20	1.71
12775626--12775659	10	3.3	10	95	4	59	0	11	0	88	0.52
12784844--12784897	25	2.2	25	83	6	65	72	12	1	12	1.21
12786567--12786616	12	4.0	12	77	10	55	22	8	20	50	1.74
12786558--12786628	26	2.7	26	88	0	106	19	5	21	53	1.65
12786574--12786710	66	2.1	66	81	2	159	23	8	17	51	1.72
12786638--12786763	26	4.8	25	66	16	58	28	7	15	48	1.72
12789663--12789715	18	2.8	18	85	5	61	73	1	0	24	0.93
12789667--12789715	14	3.5	13	78	13	53	75	2	0	22	0.90
12789811--12789866	3	18.0	3	75	14	51	66	1	3	28	1.19
12789811--12789866	18	3.2	18	80	16	64	66	1	3	28	1.19
12789992--12790058	13	5.2	13	80	7	73	64	19	0	16	1.30
12790019--12790065	13	3.8	12	83	10	58	59	17	2	21	1.47
12792529--12792689	80	2.0	80	84	4	209	36	14	19	29	1.92
12794193--12794235	3	14.3	3	100	0	86	65	0	0	34	0.93
12794649--12794693	18	2.5	19	82	13	60	8	22	0	68	1.16
12794991--12795017	14	1.9	14	100	0	54	7	11	14	66	1.43
12795130--12795182	14	3.8	14	77	7	63	9	11	0	79	0.94
12795129--12795181	27	2.0	27	88	7	81	7	13	0	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12795136--12795179	23	1.9	23	85	0	61	6	11	0	81	0.86
12795135--12795181	19	2.6	18	80	6	58	6	10	0	82	0.82
12795282--12795332	26	1.9	27	84	4	68	52	5	21	19	1.66
12796633--12796681	3	16.3	3	100	0	98	34	0	0	65	0.93
12798201--12798311	56	2.0	56	84	7	145	32	10	21	35	1.88
12802121--12802198	22	3.5	22	77	6	77	37	19	19	24	1.94
12802193--12802268	22	3.5	22	72	13	84	30	17	22	30	1.96
12802108--12802264	44	3.6	44	75	5	138	32	18	21	28	1.96
12802502--12802616	33	3.5	32	78	5	97	44	15	9	30	1.79
12802522--12802622	33	3.0	33	81	5	105	43	15	9	30	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133