genome.fa.s645.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  11  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2897985--2898053	36	1.9	35	82	8	86	36	1	7	55	1.37
2898865--2898903	13	2.9	13	85	14	53	74	5	0	20	1.01
2901683--2901715	17	2.0	17	88	5	50	33	0	3	63	1.10
2906505--2906705	110	1.8	112	80	4	246	37	10	4	47	1.58
2906615--2906803	74	2.6	76	77	12	203	37	10	5	46	1.61
2906760--2907006	110	2.2	111	85	5	313	37	8	3	50	1.51
2907925--2907963	17	2.2	17	86	9	51	25	12	10	51	1.71
2908197--2908242	23	2.0	23	100	0	92	34	26	8	30	1.86
2912615--2912644	15	2.1	15	93	6	53	60	0	0	40	0.97
2914176--2914327	30	5.1	30	73	7	114	53	1	3	40	1.31
2918099--2918128	15	1.9	16	93	6	53	30	0	0	70	0.88
2918264--2918305	18	2.3	18	80	8	50	50	0	0	50	1.00
2929414--2929452	9	4.2	9	90	3	51	20	25	0	53	1.45
2929414--2929449	18	2.0	18	94	0	63	22	25	0	52	1.47
2932294--2932346	27	2.0	26	85	10	72	60	0	5	33	1.20
2934685--2934789	30	3.6	28	85	8	131	40	0	3	54	1.25
2934792--2934843	17	3.0	16	78	13	50	42	0	7	50	1.31
2935068--2935129	32	1.9	32	87	6	90	45	3	0	51	1.17
2946614--2946661	21	2.3	21	89	3	71	56	2	8	33	1.41
2946985--2947009	12	2.1	12	100	0	50	60	0	0	40	0.97
2947098--2947233	39	3.5	38	75	15	100	47	0	2	48	1.22
2947469--2947548	33	2.5	31	81	6	97	46	0	1	52	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2947368--2947548	26	7.0	25	64	19	70	47	1	2	49	1.21
2947491--2947575	31	2.6	31	80	14	84	43	0	2	54	1.13
2947589--2947637	25	2.0	24	84	8	62	44	4	0	51	1.20
2947576--2947637	25	2.5	23	77	15	61	43	3	1	51	1.27
2949039--2949088	17	2.8	18	74	17	50	26	0	4	70	1.05
2949438--2949511	16	4.7	15	79	11	69	44	22	2	29	1.67
2949454--2949501	15	3.1	15	84	6	60	47	22	2	27	1.62
2949463--2949596	16	8.8	16	65	16	70	50	28	1	20	1.57
2949511--2949617	44	2.4	44	90	0	160	50	30	0	17	1.53
2949458--2949612	14	10.4	14	71	10	76	49	29	1	20	1.56
2955958--2955987	3	10.0	3	100	0	60	33	0	0	66	0.92
2956250--2956491	34	7.0	35	77	8	167	36	13	18	31	1.89
2956268--2956422	69	2.2	69	83	7	181	37	14	18	29	1.91
2956918--2956963	24	2.0	23	82	4	56	26	26	15	32	1.95
2958065--2958093	8	3.6	8	100	0	58	37	13	24	24	1.91
2961371--2961483	50	2.2	51	84	4	140	37	16	8	37	1.80
2961506--2961537	12	2.5	13	95	5	57	50	0	3	46	1.17
2961627--2961652	10	2.6	10	100	0	52	19	0	0	80	0.71
2962079--2962122	17	2.5	18	82	13	56	75	0	13	11	1.06
2962084--2962122	19	2.2	19	86	9	55	74	0	12	12	1.08
2973314--2973405	43	2.1	43	95	0	166	18	20	2	58	1.49
2980596--2980718	62	2.0	63	85	7	171	52	6	2	39	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2982678--2985607	875	3.4	865	83	4	3231	35	22	8	33	1.85
2985559--2985711	49	2.9	53	79	14	163	40	31	3	24	1.71
2985612--2985707	49	2.0	49	93	0	165	39	31	2	27	1.68
2985879--2986005	50	2.5	50	80	2	146	28	15	9	46	1.77
2991558--2991706	73	2.0	73	98	0	289	40	10	16	32	1.83
2992268--2993188	420	2.2	419	82	4	1079	37	12	10	39	1.78
2995820--2995859	20	2.0	20	100	0	80	15	25	25	35	1.94
2997286--2997353	35	1.9	35	90	0	109	38	22	13	26	1.91
2998232--2998358	65	2.0	65	80	12	145	32	15	11	40	1.84
3001240--3001289	24	2.1	24	88	0	73	44	8	28	20	1.79
3009431--3009472	18	2.3	19	91	4	68	19	0	2	78	0.86
3009531--3009570	20	2.0	21	90	5	64	72	12	0	15	1.12
3010367--3010416	3	16.7	3	100	0	100	66	0	0	34	0.92
3010497--3010530	17	2.0	17	100	0	68	47	0	5	47	1.26
3010495--3010548	17	3.4	15	82	12	63	51	1	3	42	1.30
3011265--3011293	14	2.0	15	93	6	51	34	0	0	65	0.93
3013538--3013566	14	2.1	14	100	0	58	34	6	0	58	1.25
3016471--3016514	21	2.0	22	86	4	63	61	9	0	29	1.27
3016738--3016763	12	2.2	12	100	0	52	46	7	23	23	1.78
3020772--3020810	14	2.8	13	84	7	51	12	2	7	76	1.09
3021340--3021382	23	1.9	22	85	4	59	37	11	16	34	1.85
3023064--3023100	18	2.1	17	90	5	56	32	8	0	59	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3027916--3027969	26	2.2	24	83	6	63	64	0	1	33	1.04
3031017--3031055	20	2.0	20	85	10	53	56	0	10	33	1.33
3032134--3032192	25	2.3	27	79	5	68	47	0	1	50	1.11
3032170--3032239	27	2.7	27	68	20	69	51	0	0	48	1.00
3032935--3032971	16	2.5	15	83	16	51	51	0	0	48	1.00
3032940--3033031	39	2.3	41	78	12	104	52	3	0	44	1.17
3032940--3033005	29	2.5	25	79	15	71	51	1	0	46	1.10
3033505--3033541	19	1.9	19	89	10	58	54	0	10	35	1.36
3042858--3043150	113	2.6	112	84	3	381	23	20	20	35	1.96
3047325--3048093	49	15.8	49	82	6	882	28	12	24	33	1.92
3047326--3048093	97	7.9	95	89	3	874	29	12	24	33	1.92
3047326--3048093	343	2.2	341	92	1	1263	29	12	24	33	1.92
3048258--3048306	5	10.0	5	87	12	75	81	16	2	0	0.78
3048258--3048306	20	2.5	20	96	3	91	81	16	2	0	0.78
3052392--3052448	25	2.3	25	84	3	71	49	0	1	49	1.11
3052872--3052909	20	1.9	20	84	10	51	26	5	23	44	1.74
3052979--3053048	31	2.3	31	80	7	81	37	4	4	54	1.40
3053192--3053228	16	2.5	15	83	16	51	51	0	0	48	1.00
3053197--3053281	39	2.1	41	82	10	104	51	3	0	44	1.18
3053197--3053262	29	2.5	25	79	15	71	51	1	0	46	1.10
3054167--3054244	31	2.5	31	79	10	88	42	7	7	42	1.62
3054682--3054731	20	2.5	20	80	9	57	46	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3057810--3058102	113	2.6	112	84	5	392	23	19	20	36	1.95
3060661--3060703	6	7.2	6	82	10	52	76	4	0	18	0.95
3060771--3060797	14	1.9	14	100	0	54	44	11	0	44	1.39
3062372--3062400	14	2.1	14	100	0	58	31	0	6	62	1.22
3062736--3062814	27	2.9	27	84	3	106	50	3	1	44	1.28
3062951--3062990	19	2.1	19	86	9	55	55	0	0	45	0.99
3066566--3066902	113	3.0	113	87	1	435	23	18	20	37	1.95
3070237--3070355	27	4.4	27	72	12	82	33	8	27	30	1.86
3070321--3070479	27	5.9	27	82	4	178	28	8	31	31	1.86
3070330--3070479	81	1.9	81	85	0	210	28	8	32	31	1.86
3073617--3073646	2	15.0	2	100	0	60	50	0	0	50	1.00
3080805--3080949	72	2.0	72	100	0	290	28	20	19	31	1.97
3080894--3081105	105	2.0	105	100	0	424	28	17	17	35	1.94
3099610--3099685	24	3.1	23	68	17	62	55	2	5	36	1.37
3104086--3104179	47	2.0	47	95	0	170	31	11	18	38	1.86
3112270--3112316	22	2.1	24	85	14	66	63	2	4	29	1.25
3115742--3115837	47	2.0	47	95	0	174	32	11	18	37	1.87
3118624--3118675	20	2.6	20	78	0	50	42	5	7	44	1.57
3121466--3121493	7	4.0	7	100	0	56	28	42	0	28	1.56
3137747--3137822	32	2.4	32	83	12	88	42	2	0	55	1.14
3137769--3137834	32	2.0	33	88	8	100	40	4	1	53	1.31
3138206--3138266	25	2.4	25	74	15	63	63	8	4	22	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3138982--3139049	30	2.3	30	82	2	84	42	0	1	55	1.08
3142634--3142683	22	2.3	22	82	6	57	22	6	0	72	1.07
3144305--3144335	7	4.6	7	96	4	55	70	0	0	29	0.87
3145401--3145457	30	1.9	30	92	0	96	43	3	8	43	1.52
3153164--3153203	2	20.0	2	100	0	80	50	0	50	0	1.00
3160824--3160998	91	1.9	92	87	5	257	34	17	15	33	1.91
3163840--3163869	15	2.0	15	93	0	51	43	0	6	50	1.28
3191410--3191445	15	2.4	15	86	13	56	30	0	0	69	0.89
3205857--3205893	18	2.1	18	89	0	56	48	29	0	21	1.50
3206030--3206149	45	2.7	44	84	7	152	37	19	23	20	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133