genome.fa.s645.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  73  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14384224--14384261	10	3.8	10	90	10	60	92	0	7	0	0.40
14384224--14384259	1	36.0	1	88	0	54	94	0	5	0	0.31
14384640--14384680	21	2.0	20	90	4	64	73	4	12	9	1.24
14386541--14386567	14	1.9	14	100	0	54	37	7	11	44	1.68
14386840--14386879	14	2.6	16	80	15	57	32	12	10	45	1.75
14390599--14390677	3	26.0	3	94	2	140	65	0	1	32	1.00
14392129--14392161	14	2.4	14	94	0	57	87	0	3	9	0.63
14392364--14392394	16	1.9	16	93	0	53	48	9	3	38	1.52
14393749--14393820	22	3.3	22	84	0	90	31	19	19	29	1.96
14394016--14394350	33	10.6	32	72	14	133	34	20	14	31	1.92
14394021--14394177	65	2.4	66	77	9	153	31	19	15	33	1.93
14394150--14394231	29	2.9	28	77	15	78	26	25	15	31	1.96
14394514--14394559	21	2.2	21	88	7	67	84	6	6	2	0.84
14394896--14395834	331	2.8	331	85	1	1247	25	18	25	30	1.98
14399454--14399492	12	2.9	13	85	14	53	74	0	5	20	1.01
14399502--14399531	8	3.8	8	100	0	60	76	0	0	23	0.78
14399633--14399669	13	2.8	13	95	0	65	62	16	2	18	1.45
14399665--14399711	19	2.5	19	82	6	60	42	25	10	21	1.85
14399969--14400004	17	2.1	17	89	0	54	66	0	2	30	1.06
14401040--14401110	26	2.8	26	78	18	69	74	2	2	19	1.07
14403889--14403949	1	61.0	1	76	0	50	3	1	8	86	0.73
14403890--14403949	24	2.6	22	87	10	84	3	1	8	86	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14404250--14404294	18	2.6	18	86	6	58	6	20	0	73	1.05
14410489--14410562	38	1.9	38	86	0	103	33	12	16	37	1.85
14410958--14411019	21	3.0	20	72	6	52	35	9	9	45	1.70
14410945--14411045	22	4.5	23	74	17	72	40	9	7	41	1.67
14411294--14411383	21	4.2	21	70	16	76	26	6	21	45	1.76
14411434--14411516	17	4.8	17	74	2	85	36	14	9	39	1.79
14411463--14411516	18	3.1	18	89	2	83	40	12	9	37	1.76
14411564--14411685	16	7.5	16	78	7	129	31	11	13	42	1.80
14411514--14411742	33	7.0	32	71	11	126	33	12	13	41	1.82
14411564--14411740	49	3.6	49	81	6	173	32	11	14	41	1.82
14411565--14411740	16	10.8	16	73	8	113	31	11	14	41	1.83
14411816--14411871	17	3.2	17	76	2	67	37	7	10	44	1.67
14411917--14411997	34	2.4	35	83	6	103	35	11	11	41	1.76
14412659--14412684	6	4.3	6	100	0	52	65	34	0	0	0.93
14415444--14415474	16	1.9	16	93	0	53	22	19	6	51	1.69
14416865--14416916	24	2.3	23	81	15	65	48	0	1	50	1.12
14426391--14426451	26	2.3	26	97	0	113	47	0	31	21	1.51
14427264--14427342	26	3.0	24	79	20	70	31	3	2	62	1.27
14427296--14427344	18	2.8	18	85	11	59	30	2	0	67	1.02
14427267--14427336	22	3.0	22	71	20	54	32	4	1	61	1.24
14431203--14431236	16	2.2	15	94	5	59	0	17	0	82	0.67
14432152--14432925	410	1.9	410	88	1	1176	37	13	10	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14435601--14435633	16	2.1	16	94	0	57	42	0	27	30	1.56
14442277--14442321	21	2.1	21	95	0	81	22	8	24	44	1.81
14443926--14443974	21	2.3	21	89	6	73	73	6	0	20	1.04
14443942--14443990	16	3.0	15	80	14	53	77	6	2	14	1.05
14445060--14445166	35	3.1	35	81	0	106	15	15	16	51	1.77
14445170--14445251	35	2.3	36	87	4	121	15	9	13	60	1.57
14445259--14445452	35	5.5	35	74	9	135	15	13	15	55	1.70
14445283--14445527	35	6.8	36	74	8	158	15	13	15	55	1.69
14445164--14445346	95	1.9	96	82	3	226	15	13	13	57	1.66
14445323--14445527	72	2.8	73	79	9	183	16	13	14	56	1.68
14445639--14445677	11	3.5	11	86	6	51	76	23	0	0	0.78
14447671--14447711	21	1.9	22	95	5	75	12	0	21	65	1.25
14459143--14459173	16	1.9	16	93	0	53	6	6	3	83	0.88
14460737--14460789	16	3.2	16	79	10	54	52	1	1	43	1.23
14460779--14460826	20	2.4	21	79	10	55	62	10	2	25	1.38
14461280--14461326	21	2.2	21	85	7	60	46	12	14	25	1.80
14463937--14463970	16	2.1	16	88	0	50	41	0	2	55	1.15
14467921--14467965	5	9.0	5	90	0	72	0	20	0	80	0.72
14467922--14467977	10	5.4	10	85	8	67	1	14	0	83	0.72
14467921--14467980	15	3.9	15	83	10	77	1	15	0	83	0.73
14467962--14468073	53	2.1	52	85	4	154	41	9	1	46	1.47
14468493--14468582	27	3.3	27	81	7	94	20	0	35	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14468497--14468600	41	2.5	41	87	7	147	18	0	35	46	1.49
14468493--14468674	7	26.3	7	69	13	92	17	0	35	46	1.52
14468629--14468685	13	4.3	13	82	4	69	12	0	43	43	1.41
14468623--14468675	27	2.0	27	88	0	79	11	0	41	47	1.39
14468590--14468661	34	2.1	35	86	2	101	12	1	36	50	1.49
14471117--14471350	47	4.9	47	73	6	202	42	11	15	29	1.83
14471103--14471241	49	2.9	47	76	11	138	46	13	12	27	1.80
14471104--14471350	96	2.6	95	83	2	291	42	12	16	28	1.84
14473048--14473113	29	2.4	27	77	18	73	62	6	15	16	1.52
14473186--14473231	18	2.7	17	83	16	60	69	8	8	13	1.36
14482198--14482250	20	2.7	20	78	0	61	39	22	16	20	1.92
14484346--14484558	110	1.9	111	94	0	374	46	12	23	17	1.82
14489985--14490010	2	13.0	2	100	0	52	50	0	0	50	1.00
14490296--14490343	22	2.2	22	96	0	87	37	22	6	33	1.80
14499487--14499517	2	15.5	2	93	0	53	51	0	3	45	1.17
14501908--14501937	14	2.1	14	93	0	51	16	13	0	70	1.18
14501944--14501985	22	1.9	22	85	9	59	45	4	4	45	1.45
14502437--14502477	21	2.0	21	100	0	82	58	2	0	39	1.11
14506261--14506289	14	2.1	14	100	0	58	13	17	13	55	1.70
14514551--14514605	26	2.1	26	86	0	74	25	30	23	20	1.98
14521213--14521248	13	2.8	13	95	0	63	30	2	16	50	1.60
14521357--14521396	17	2.6	15	88	11	55	15	25	7	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14521350--14521396	15	3.0	16	85	11	62	19	23	6	51	1.70
14527757--14527795	19	2.1	19	85	0	51	33	17	12	35	1.88
14531841--14531884	16	2.6	16	86	10	61	4	20	0	75	0.98
14533125--14533196	33	2.2	33	79	0	81	38	18	8	34	1.80
14538351--14538386	18	2.0	18	94	0	63	44	8	11	36	1.70
14538548--14538601	17	3.1	17	73	23	58	53	7	11	27	1.63
14538538--14538609	35	2.1	35	94	0	126	52	8	11	27	1.65
14538538--14538596	18	3.3	18	73	21	70	55	6	10	27	1.58
14539197--14539384	94	2.0	94	95	0	340	37	11	13	37	1.81
14552072--14552105	15	2.3	15	89	0	50	58	8	8	23	1.56
14552225--14552259	16	2.2	16	89	0	52	62	8	5	22	1.45
14552612--14552644	15	2.1	16	88	11	50	33	0	27	39	1.57
14552785--14552831	22	2.2	22	92	3	78	48	19	4	27	1.67
14553610--14553652	20	2.2	20	91	0	68	32	16	27	23	1.96
14555061--14555085	9	2.8	9	100	0	50	56	20	0	24	1.43
14555728--14555789	15	4.1	15	78	15	56	16	1	0	82	0.75
14555727--14555787	8	7.6	8	80	14	72	14	1	0	83	0.72
14565529--14565567	16	2.4	16	86	0	51	48	5	7	38	1.54
14566888--14566929	22	1.9	22	85	9	59	16	16	7	59	1.58
14571377--14571410	14	2.4	14	85	0	50	47	2	2	47	1.32
14577439--14577596	79	2.0	79	92	0	262	37	13	12	36	1.82
14579897--14579936	20	2.0	20	85	4	55	7	5	7	80	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14580475--14580522	24	2.0	23	88	11	71	45	25	10	18	1.81
14583046--14583087	7	6.0	7	78	10	50	66	2	2	28	1.16
14583044--14583084	14	2.9	14	82	10	57	68	2	2	26	1.15
14584501--14584541	18	2.3	18	87	4	57	70	4	7	17	1.28
14585031--14585093	21	3.2	20	77	6	56	65	0	14	20	1.27
14585559--14585600	19	2.3	19	84	12	52	11	7	9	71	1.31
14587880--14588688	132	6.1	133	76	7	641	52	8	20	18	1.71
14587923--14588753	401	2.1	398	79	6	874	53	8	20	17	1.69
14590327--14590391	26	2.5	26	94	0	112	46	26	4	23	1.71
14590302--14590389	26	2.9	31	73	22	80	45	22	5	26	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133