genome.fa.s645.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  12  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3210491--3210559	17	3.8	18	74	14	70	69	5	0	24	1.10
3210645--3210816	19	9.2	18	69	20	88	26	3	4	65	1.28
3210737--3210815	18	4.4	17	76	14	70	27	2	2	67	1.17
3210756--3210854	9	10.7	9	68	10	56	24	1	5	69	1.14
3210673--3210816	55	2.6	55	78	10	143	26	2	4	66	1.23
3210758--3210814	17	3.3	17	90	2	87	29	1	1	66	1.12
3214001--3214051	23	2.2	23	80	10	59	21	1	0	76	0.88
3214006--3214053	20	2.6	18	87	9	62	27	2	0	70	0.98
3214022--3214064	20	2.2	20	83	4	52	39	2	0	58	1.11
3214057--3214105	21	2.3	22	80	16	59	71	6	0	22	1.08
3214802--3214857	21	2.6	21	88	2	76	39	14	10	35	1.81
3215990--3216050	26	2.4	27	75	10	65	6	18	1	73	1.12
3218956--3219013	28	2.0	29	86	3	82	48	1	22	27	1.60
3222659--3222719	16	4.1	16	75	12	58	55	0	0	44	0.99
3222679--3222719	8	5.2	8	82	5	57	58	0	0	41	0.98
3222682--3222734	26	2.1	25	85	3	70	60	0	0	39	0.97
3224001--3224030	13	2.3	13	94	0	51	16	10	0	73	1.09
3224060--3224113	24	2.2	24	80	0	63	38	0	3	57	1.17
3225641--3225680	20	2.0	20	85	9	55	60	5	2	32	1.32
3226465--3226836	57	6.3	58	85	6	500	35	11	7	45	1.69
3226463--3226836	119	3.2	117	89	4	542	35	11	7	45	1.69
3227324--3227789	59	7.9	58	83	10	590	34	11	7	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3227324--3227789	116	4.0	115	88	6	677	34	11	7	46	1.68
3227807--3227852	11	4.2	11	84	13	51	80	2	4	13	0.95
3227810--3227854	17	2.6	18	82	10	58	80	2	6	11	0.99
3228085--3228157	33	2.2	33	100	0	146	27	27	26	19	1.99
3228793--3228850	18	3.2	18	75	15	66	70	0	6	22	1.10
3228909--3229063	4	38.5	4	66	25	53	69	3	1	25	1.14
3228953--3228998	17	2.5	20	82	13	62	65	2	0	32	1.05
3228951--3229098	8	17.2	9	67	20	59	68	4	0	27	1.07
3228974--3229012	15	2.5	16	84	16	55	64	5	0	30	1.15
3228946--3229095	37	3.9	37	72	20	112	70	4	0	26	1.05
3231648--3231697	13	4.2	11	80	16	55	42	0	4	54	1.19
3231757--3231795	18	2.0	20	85	9	55	33	5	0	61	1.18
3231810--3231866	11	5.2	11	79	14	64	57	0	0	42	0.98
3231799--3231853	20	2.8	20	83	5	67	56	0	0	43	0.99
3231830--3231882	12	4.3	12	76	11	54	64	0	1	33	1.05
3232528--3232560	2	16.5	2	100	0	66	51	0	0	48	1.00
3232648--3232696	24	2.0	24	100	0	98	38	20	0	40	1.53
3235535--3235579	21	2.2	20	84	4	54	64	6	4	24	1.37
3235661--3235693	15	2.2	15	94	0	57	57	6	33	3	1.38
3240267--3240448	89	1.9	90	83	9	231	49	16	15	18	1.80
3241053--3241093	18	2.2	20	86	8	59	65	2	9	21	1.34
3241617--3241670	28	2.0	27	88	3	81	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3241872--3241912	12	3.2	13	81	18	50	29	0	2	68	1.03
3243711--3243802	42	2.2	42	84	0	121	52	14	11	21	1.73
3249388--3249425	17	2.2	17	90	4	58	44	0	0	55	0.99
3249388--3249427	6	6.7	6	88	8	55	45	0	0	55	0.99
3249379--3249427	18	2.6	19	81	12	66	44	0	2	53	1.12
3249764--3249849	34	2.5	35	75	17	99	53	1	0	45	1.07
3249809--3249888	28	2.8	29	75	11	85	53	0	1	45	1.08
3249801--3249887	11	8.0	11	70	14	56	55	0	1	43	1.07
3249801--3249891	18	4.8	20	70	15	59	56	0	1	42	1.06
3249791--3249925	32	4.2	32	74	14	98	53	0	0	45	1.11
3263263--3263300	15	2.4	16	82	8	51	60	0	0	39	0.97
3272061--3272090	2	15.0	2	100	0	60	50	0	0	50	1.00
3274050--3274093	22	2.0	22	82	8	54	43	2	0	54	1.12
3286651--3286743	30	3.2	29	75	6	80	26	1	23	48	1.58
3286795--3286871	8	9.9	8	72	14	63	19	1	28	50	1.55
3286776--3286871	15	6.1	15	79	9	93	18	2	30	48	1.60
3288323--3288367	22	2.1	21	83	4	54	42	0	0	57	0.98
3289256--3289304	21	2.3	21	85	3	62	53	2	2	42	1.24
3289259--3289312	21	2.3	23	78	15	58	51	1	1	44	1.22
3289905--3289961	25	2.3	27	76	17	68	54	1	8	35	1.42
3291641--3291683	14	3.1	14	77	9	52	60	0	0	39	0.97
3292296--3292334	19	2.1	19	85	9	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3294015--3294062	25	1.9	25	100	0	96	41	2	0	56	1.11
3299260--3299302	14	3.0	15	76	10	54	48	0	2	48	1.14
3299330--3299415	42	2.1	40	81	12	95	52	2	2	43	1.26
3299689--3299732	18	2.4	18	88	0	61	43	0	0	56	0.99
3299682--3299754	21	3.6	21	78	12	62	43	1	0	54	1.08
3299675--3299742	18	3.6	18	72	18	57	41	1	0	57	1.08
3299717--3299788	29	2.5	27	84	13	90	50	0	0	50	1.00
3299746--3299808	24	2.8	24	76	13	71	57	0	0	42	0.99
3300643--3300677	18	2.0	17	88	5	52	37	11	11	40	1.77
3301412--3301436	13	1.9	13	100	0	50	68	0	0	32	0.90
3313736--3313770	18	2.0	18	88	5	54	68	5	17	8	1.35
3320225--3320267	21	2.0	21	90	9	68	51	2	4	41	1.35
3320260--3320303	14	3.3	14	84	6	56	56	0	2	40	1.11
3320226--3320302	12	6.5	11	76	19	52	54	1	2	41	1.22
3320239--3320309	12	5.8	12	73	18	58	54	0	2	42	1.14
3320365--3320427	29	2.2	29	81	10	78	44	3	1	50	1.27
3324236--3324295	28	2.2	27	90	3	93	36	1	0	61	1.06
3331127--3331175	6	8.0	6	93	4	80	48	2	18	30	1.59
3331127--3331175	19	2.7	18	90	6	80	48	2	18	30	1.59
3331127--3331182	25	2.2	25	93	0	94	46	1	21	30	1.62
3332813--3332875	33	1.9	33	100	0	126	38	19	25	17	1.93
3334529--3334557	2	15.0	2	92	7	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3337528--3337624	32	3.2	31	64	24	80	35	14	9	41	1.78
3337322--3337702	58	6.4	58	84	6	428	34	13	6	44	1.71
3337545--3337634	27	3.1	27	65	25	67	37	15	6	40	1.74
3337340--3337701	176	2.0	175	88	4	539	35	13	7	44	1.71
3337364--3337702	59	5.7	58	81	7	337	35	13	7	43	1.72
3337736--3337819	6	14.7	6	75	16	72	79	1	4	14	0.95
3337736--3337811	35	2.2	34	84	11	102	80	1	3	14	0.92
3337748--3337820	17	4.2	17	78	19	80	82	1	2	13	0.85
3337736--3337831	10	9.1	11	80	12	78	78	1	4	16	0.97
3338733--3338776	19	2.3	19	84	0	61	68	9	11	11	1.40
3338785--3338870	20	4.1	21	73	11	70	72	2	3	22	1.12
3338790--3338845	21	2.7	21	86	5	69	69	3	5	21	1.24
3338782--3338889	36	3.1	36	70	26	88	70	2	3	23	1.17
3338787--3338889	17	5.9	17	70	16	61	68	2	3	24	1.20
3338976--3339014	20	1.9	20	89	5	60	82	2	2	12	0.89
3339213--3339343	42	3.1	42	82	2	138	35	22	16	25	1.95
3340350--3340429	14	5.6	14	82	12	101	12	5	0	82	0.82
3340364--3340425	8	7.2	8	78	20	63	11	3	0	85	0.71
3340350--3340425	27	2.9	27	84	13	104	11	3	0	84	0.76
3340350--3340418	7	9.9	7	80	12	79	11	4	0	84	0.77
3340350--3340441	43	2.2	42	88	9	134	13	6	0	80	0.89
3340350--3340441	28	3.2	28	82	10	107	13	6	0	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3340364--3340437	35	2.1	34	87	7	105	12	5	0	82	0.83
3350824--3351159	118	2.8	116	81	8	381	36	13	6	44	1.69
3350824--3351157	59	5.7	58	82	7	338	36	13	6	44	1.69
3351192--3351269	6	13.7	6	71	15	58	78	1	6	14	1.01
3351192--3351257	29	2.3	28	78	14	73	78	1	6	13	1.00
3351213--3351351	8	15.8	8	72	20	57	74	4	3	17	1.13
3351292--3351351	4	14.8	4	87	3	84	76	3	0	20	0.92
3352169--3352214	20	2.3	19	85	10	65	67	10	13	8	1.42
3352234--3352313	20	3.9	21	71	11	67	70	2	3	23	1.16
3352537--3352566	13	2.4	13	94	5	53	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133