genome.fa.s645.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26282861

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   

This is table  94  of  133  ( 15876 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18348467--18348552	30	2.8	30	80	13	95	24	11	13	50	1.75
18348832--18348866	17	1.9	18	88	11	54	14	0	5	80	0.89
18349430--18349473	17	2.6	17	85	3	63	38	13	2	45	1.56
18349617--18349955	54	6.2	53	74	12	226	36	7	5	49	1.56
18349659--18349933	112	2.5	110	74	11	253	34	8	5	52	1.54
18354491--18354543	22	2.4	22	78	9	63	35	11	15	37	1.83
18354855--18354897	22	2.0	22	85	0	59	44	0	16	39	1.48
18354533--18355355	412	2.0	412	87	4	1178	39	10	16	32	1.83
18354992--18355050	22	2.7	22	81	0	64	32	15	22	30	1.94
18355103--18355144	22	1.9	22	95	0	75	33	14	16	35	1.89
18354947--18355167	114	1.9	114	79	7	243	37	12	17	33	1.87
18355222--18355283	23	2.7	23	77	10	72	50	4	14	30	1.64
18355468--18355507	18	2.2	18	86	0	53	45	5	20	30	1.72
18358752--18358799	17	2.7	18	79	20	57	43	6	20	29	1.76
18359812--18359849	17	2.2	18	90	4	60	52	7	2	36	1.45
18359831--18360083	55	4.6	54	77	8	235	37	9	6	45	1.64
18360372--18360412	20	2.0	20	85	0	55	39	12	17	31	1.86
18363345--18363386	17	2.5	17	92	0	66	69	4	26	0	1.08
18363724--18363755	10	3.2	10	100	0	64	90	0	9	0	0.45
18364735--18364773	12	3.2	12	88	3	51	71	2	12	12	1.24
18364847--18365434	49	12.1	47	74	10	398	36	12	11	40	1.79
18364847--18365434	99	6.0	98	77	10	480	36	12	11	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18364847--18365434	192	3.0	191	79	11	581	36	12	11	40	1.79
18367798--18367835	18	2.2	18	90	9	62	42	26	5	26	1.76
18367828--18367883	29	1.9	29	92	7	96	37	30	8	23	1.85
18367877--18367931	7	8.0	7	72	11	51	45	36	0	18	1.49
18367831--18367914	29	2.9	29	79	15	84	41	29	5	22	1.77
18367877--18367939	19	3.2	18	80	15	63	44	38	1	15	1.57
18367877--18367932	19	2.8	19	83	8	67	46	35	0	17	1.49
18373054--18373088	18	1.9	18	94	0	61	60	5	14	20	1.54
18374308--18374367	19	3.2	19	73	4	59	21	3	35	40	1.70
18375996--18376504	144	3.6	142	79	7	523	39	14	11	33	1.82
18375990--18376525	287	1.9	286	82	4	686	39	14	11	33	1.83
18376624--18376679	29	1.9	29	81	0	67	23	17	19	39	1.92
18377456--18377496	21	2.0	21	90	0	64	58	7	14	19	1.59
18390994--18391029	18	1.9	19	88	5	56	75	8	2	13	1.15
18399420--18399476	11	5.4	11	75	21	50	21	3	1	73	1.07
18399420--18399476	21	2.7	22	81	10	66	21	3	1	73	1.07
18400063--18400095	14	2.4	14	94	0	57	84	0	12	3	0.72
18400061--18400097	8	4.9	8	83	12	51	86	0	10	2	0.67
18404238--18404283	2	23.0	2	82	8	58	45	6	0	47	1.28
18404238--18404283	18	2.7	18	90	6	69	45	6	0	47	1.28
18405746--18405774	3	9.7	3	100	0	58	0	34	0	65	0.93
18413561--18413594	18	1.9	18	88	5	52	52	14	20	11	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18416309--18416349	22	1.9	22	85	5	57	36	9	17	36	1.82
18416901--18416952	27	1.9	27	84	0	68	42	3	5	48	1.45
18418075--18418137	15	4.3	16	63	29	50	52	0	7	39	1.31
18420100--18420126	2	13.5	2	100	0	54	51	0	0	48	1.00
18422619--18422651	2	16.5	2	100	0	66	51	0	0	48	1.00
18422832--18422879	16	2.8	17	78	15	55	39	0	8	52	1.32
18424091--18424374	131	2.2	132	79	5	301	41	5	15	36	1.72
18424608--18424672	26	2.6	25	73	22	71	49	1	0	49	1.10
18429803--18429853	17	2.8	18	76	5	50	49	0	0	50	1.00
18429915--18429962	24	2.0	25	87	4	71	64	2	0	33	1.05
18430937--18430995	24	2.4	25	91	2	102	59	10	0	30	1.30
18430898--18430994	13	7.8	13	68	21	57	57	12	2	27	1.46
18430983--18431054	28	2.5	28	83	14	94	58	13	2	25	1.49
18430989--18431050	31	2.1	29	87	6	88	56	14	3	25	1.53
18431027--18431137	49	2.3	47	83	6	125	53	13	5	27	1.62
18431154--18431210	25	2.2	27	87	6	91	63	10	3	22	1.42
18431275--18431343	17	4.1	16	81	17	70	73	10	0	15	1.08
18431275--18431344	16	4.1	17	80	14	74	74	10	0	15	1.07
18432075--18432117	22	2.0	22	85	0	59	39	18	11	30	1.86
18432075--18432150	21	3.6	21	75	5	55	39	13	11	35	1.81
18432181--18432241	18	3.4	18	75	8	70	45	13	16	24	1.83
18432255--18432467	37	5.6	37	75	11	173	50	12	10	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18432299--18432347	20	2.3	22	86	13	68	55	16	8	20	1.66
18432395--18432430	11	3.5	11	78	21	51	55	13	8	22	1.65
18432255--18432472	19	11.6	18	77	9	168	51	12	10	25	1.71
18432516--18432599	22	3.6	24	73	14	77	45	13	4	36	1.64
18432539--18432700	22	7.2	22	65	9	76	44	13	3	38	1.62
18432539--18432670	23	5.9	22	67	14	72	46	12	2	39	1.54
18432504--18432700	45	4.4	45	76	6	168	45	12	4	38	1.61
18432504--18432694	90	2.1	92	82	6	230	46	12	4	37	1.61
18433962--18434000	20	1.9	21	84	5	53	7	20	0	71	1.10
18436948--18437066	45	2.7	45	84	3	134	57	11	10	21	1.63
18437695--18437753	25	2.5	24	83	8	75	55	13	5	25	1.58
18437857--18437922	36	2.0	35	85	14	95	50	12	7	30	1.67
18437884--18437977	24	3.9	24	73	14	59	54	9	5	30	1.55
18438062--18438137	14	5.3	13	80	12	71	80	3	0	15	0.86
18438068--18438131	7	8.4	8	77	19	50	79	4	0	15	0.89
18438061--18438137	6	13.0	6	76	13	54	79	3	0	16	0.88
18439784--18439953	61	2.8	61	83	2	198	37	13	18	31	1.89
18441075--18441112	19	2.0	19	100	0	76	31	10	15	42	1.81
18441477--18441510	11	3.1	11	86	0	50	35	14	29	20	1.93
18446262--18446297	3	12.0	3	100	0	72	66	0	0	33	0.92
18449802--18449838	19	1.9	19	88	0	56	48	5	24	21	1.71
18454823--18454893	29	2.4	29	80	4	88	80	7	4	8	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18455866--18455945	41	2.0	41	87	5	117	36	18	13	31	1.90
18456001--18456237	96	2.5	97	85	6	308	35	16	13	35	1.87
18456155--18456403	127	2.0	125	84	3	329	35	18	12	34	1.88
18456631--18456675	17	2.8	15	81	15	54	77	11	2	8	1.07
18458185--18458225	21	2.0	21	90	0	64	24	7	7	60	1.48
18463394--18463418	3	8.3	3	100	0	50	36	0	32	32	1.58
18463417--18463485	3	23.0	3	100	0	138	66	0	0	33	0.92
18464533--18464594	19	3.7	18	68	31	57	53	9	1	35	1.44
18464532--18464597	30	2.2	31	94	2	116	56	9	1	33	1.40
18465670--18465705	3	12.0	3	93	0	63	30	33	2	33	1.72
18467985--18468023	20	2.1	18	86	13	53	46	0	10	43	1.37
18470690--18470720	16	1.9	16	93	0	53	41	12	3	41	1.59
18471259--18471330	38	1.9	38	94	2	128	29	9	31	29	1.89
18472224--18472297	21	3.6	21	85	1	87	25	27	25	21	2.00
18474132--18474158	3	9.0	3	100	0	54	66	0	0	33	0.92
18475204--18475265	19	3.7	18	68	31	57	53	9	1	35	1.44
18475203--18475268	30	2.2	31	94	2	116	56	9	1	33	1.40
18476342--18476377	3	12.0	3	93	0	63	30	33	2	33	1.72
18478672--18478710	20	2.1	18	86	13	53	46	0	10	43	1.37
18481941--18482016	38	2.0	38	92	7	129	25	10	32	31	1.89
18482916--18482989	21	3.6	21	85	1	87	25	27	25	21	2.00
18483040--18483265	111	2.0	111	96	1	418	29	22	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18483357--18483430	21	3.6	21	85	1	96	21	25	27	25	2.00
18490785--18490822	2	19.0	2	100	0	76	50	0	0	50	1.00
18491057--18491101	22	2.0	22	86	0	63	80	4	8	6	1.03
18491129--18491167	18	2.2	18	90	0	60	38	7	2	51	1.44
18491449--18491487	13	3.0	13	78	14	53	58	2	10	28	1.44
18491449--18491489	14	3.1	14	75	10	50	58	2	9	29	1.43
18492763--18492815	14	3.9	14	80	5	63	62	3	0	33	1.13
18495875--18495955	22	3.5	23	74	22	89	33	3	4	58	1.37
18495863--18495958	47	2.0	47	100	0	192	32	4	4	59	1.36
18505261--18505297	12	3.0	13	88	7	51	18	0	35	45	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133